data_4OP3
#
_model_server_result.job_id            ZqyxVrFpsqYiQr-X0sF82w 
_model_server_result.datetime_utc      '2024-11-27 02:59:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4op3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    4OP3 
#
_exptl.entry_id    4OP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              262.152 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            D-SORBITOL-6-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4OP3 
_cell.length_a            148.913 
_cell.length_b            148.913 
_cell.length_c            132.403 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,JA 1 1 
B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,KA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 R N N 
#
_chem_comp.formula           'C6 H15 O9 P' 
_chem_comp.formula_weight    262.152 
_chem_comp.id                S6P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-SORBITOL-6-PHOSPHATE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     1-O-PHOSPHONO-D-GLUCITOL;D-GLUCITOL-6-PHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 S6P sing 349 n n 
C1 O1 S6P sing 350 n n 
C1 H11 S6P sing 351 n n 
C1 H12 S6P sing 352 n n 
C2 C3 S6P sing 353 n n 
C2 O2 S6P sing 354 n n 
C2 H2 S6P sing 355 n n 
C3 C4 S6P sing 356 n n 
C3 O3 S6P sing 357 n n 
C3 H3 S6P sing 358 n n 
C4 C5 S6P sing 359 n n 
C4 O4 S6P sing 360 n n 
C4 H4 S6P sing 361 n n 
C5 C6 S6P sing 362 n n 
C5 O5 S6P sing 363 n n 
C5 H5 S6P sing 364 n n 
C6 O6 S6P sing 365 n n 
C6 H61 S6P sing 366 n n 
C6 H62 S6P sing 367 n n 
O1 HO1 S6P sing 368 n n 
O2 HO2 S6P sing 369 n n 
O3 HO3 S6P sing 370 n n 
O4 HO4 S6P sing 371 n n 
O5 HO5 S6P sing 372 n n 
O6 P S6P sing 373 n n 
P O1P S6P sing 374 n n 
P O2P S6P sing 375 n n 
P O3P S6P doub 376 n n 
O1P H1P S6P sing 377 n n 
O2P H2P S6P sing 378 n n 
#
_atom_sites.entry_id                     4OP3 
_atom_sites.fract_transf_matrix[1][1]    0.006715 
_atom_sites.fract_transf_matrix[1][2]    0.003877 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007553 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2UY A 1 701 1 2UY UNL . 
D 3 S6P A 1 702 1 S6P S6P . 
E 4 IOD A 1 703 5 IOD IOD . 
F 4 IOD A 1 704 6 IOD IOD . 
G 4 IOD A 1 705 7 IOD IOD . 
H 4 IOD A 1 706 9 IOD IOD . 
I 4 IOD A 1 707 10 IOD IOD . 
J 4 IOD A 1 708 12 IOD IOD . 
K 4 IOD A 1 709 14 IOD IOD . 
L 4 IOD A 1 710 17 IOD IOD . 
M 4 IOD A 1 711 19 IOD IOD . 
N 4 IOD A 1 712 20 IOD IOD . 
O 4 IOD A 1 713 21 IOD IOD . 
P 4 IOD A 1 714 25 IOD IOD . 
Q 2 2UY B 1 701 1 2UY UNL . 
R 3 S6P B 1 702 1 S6P S6P . 
S 4 IOD B 1 703 1 IOD IOD . 
T 4 IOD B 1 704 2 IOD IOD . 
U 4 IOD B 1 705 3 IOD IOD . 
V 4 IOD B 1 706 4 IOD IOD . 
W 4 IOD B 1 707 8 IOD IOD . 
X 4 IOD B 1 708 11 IOD IOD . 
Y 4 IOD B 1 709 13 IOD IOD . 
Z 4 IOD B 1 710 15 IOD IOD . 
AA 4 IOD B 1 711 16 IOD IOD . 
BA 4 IOD B 1 712 18 IOD IOD . 
CA 4 IOD B 1 713 22 IOD IOD . 
DA 4 IOD B 1 714 23 IOD IOD . 
EA 4 IOD B 1 715 24 IOD IOD . 
FA 5 GOL B 1 716 1 GOL GOL . 
GA 5 GOL B 1 717 2 GOL GOL . 
HA 6 SO4 B 1 718 1 SO4 SO4 . 
IA 6 SO4 B 1 719 3 SO4 SO4 . 
JA 7 HOH A 1 801 3 HOH HOH . 
JA 7 HOH A 2 802 7 HOH HOH . 
JA 7 HOH A 3 803 8 HOH HOH . 
JA 7 HOH A 4 804 10 HOH HOH . 
JA 7 HOH A 5 805 12 HOH HOH . 
JA 7 HOH A 6 806 13 HOH HOH . 
JA 7 HOH A 7 807 14 HOH HOH . 
JA 7 HOH A 8 808 16 HOH HOH . 
JA 7 HOH A 9 809 24 HOH HOH . 
JA 7 HOH A 10 810 32 HOH HOH . 
JA 7 HOH A 11 811 34 HOH HOH . 
JA 7 HOH A 12 812 35 HOH HOH . 
JA 7 HOH A 13 813 36 HOH HOH . 
JA 7 HOH A 14 814 38 HOH HOH . 
JA 7 HOH A 15 815 40 HOH HOH . 
JA 7 HOH A 16 816 43 HOH HOH . 
JA 7 HOH A 17 817 50 HOH HOH . 
JA 7 HOH A 18 818 51 HOH HOH . 
JA 7 HOH A 19 819 52 HOH HOH . 
JA 7 HOH A 20 820 53 HOH HOH . 
JA 7 HOH A 21 821 54 HOH HOH . 
JA 7 HOH A 22 822 55 HOH HOH . 
JA 7 HOH A 23 823 57 HOH HOH . 
JA 7 HOH A 24 824 59 HOH HOH . 
JA 7 HOH A 25 825 60 HOH HOH . 
JA 7 HOH A 26 826 61 HOH HOH . 
KA 7 HOH B 1 801 1 HOH HOH . 
KA 7 HOH B 2 802 2 HOH HOH . 
KA 7 HOH B 3 803 4 HOH HOH . 
KA 7 HOH B 4 804 5 HOH HOH . 
KA 7 HOH B 5 805 6 HOH HOH . 
KA 7 HOH B 6 806 9 HOH HOH . 
KA 7 HOH B 7 807 11 HOH HOH . 
KA 7 HOH B 8 808 15 HOH HOH . 
KA 7 HOH B 9 809 17 HOH HOH . 
KA 7 HOH B 10 810 18 HOH HOH . 
KA 7 HOH B 11 811 19 HOH HOH . 
KA 7 HOH B 12 812 20 HOH HOH . 
KA 7 HOH B 13 813 21 HOH HOH . 
KA 7 HOH B 14 814 22 HOH HOH . 
KA 7 HOH B 15 815 23 HOH HOH . 
KA 7 HOH B 16 816 25 HOH HOH . 
KA 7 HOH B 17 817 26 HOH HOH . 
KA 7 HOH B 18 818 27 HOH HOH . 
KA 7 HOH B 19 819 28 HOH HOH . 
KA 7 HOH B 20 820 29 HOH HOH . 
KA 7 HOH B 21 821 30 HOH HOH . 
KA 7 HOH B 22 822 31 HOH HOH . 
KA 7 HOH B 23 823 33 HOH HOH . 
KA 7 HOH B 24 824 37 HOH HOH . 
KA 7 HOH B 25 825 39 HOH HOH . 
KA 7 HOH B 26 826 41 HOH HOH . 
KA 7 HOH B 27 827 42 HOH HOH . 
KA 7 HOH B 28 828 44 HOH HOH . 
KA 7 HOH B 29 829 45 HOH HOH . 
KA 7 HOH B 30 830 46 HOH HOH . 
KA 7 HOH B 31 831 47 HOH HOH . 
KA 7 HOH B 32 832 48 HOH HOH . 
KA 7 HOH B 33 833 49 HOH HOH . 
KA 7 HOH B 34 834 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 S6P . . . D 3 49.253 -24.466 -25.412 1 22.33 ? C1 S6P 702 A 1 
HETATM 2 C C2 S6P . . . D 3 50.083 -25.719 -25.191 1 24.28 ? C2 S6P 702 A 1 
HETATM 3 C C3 S6P . . . D 3 50.275 -25.962 -23.714 1 26.37 ? C3 S6P 702 A 1 
HETATM 4 C C4 S6P . . . D 3 50.994 -24.79 -23.107 1 27.7 ? C4 S6P 702 A 1 
HETATM 5 C C5 S6P . . . D 3 51.584 -25.21 -21.779 1 25.65 ? C5 S6P 702 A 1 
HETATM 6 C C6 S6P . . . D 3 52.297 -24.037 -21.113 1 24.01 ? C6 S6P 702 A 1 
HETATM 7 O O1 S6P . . . D 3 48.274 -24.891 -26.331 1 19.87 ? O1 S6P 702 A 1 
HETATM 8 O O2 S6P . . . D 3 49.391 -26.817 -25.794 1 22.89 ? O2 S6P 702 A 1 
HETATM 9 O O3 S6P . . . D 3 51.15 -27.057 -23.53 1 30.27 ? O3 S6P 702 A 1 
HETATM 10 O O4 S6P . . . D 3 52.071 -24.407 -23.981 1 32.77 ? O4 S6P 702 A 1 
HETATM 11 O O5 S6P . . . D 3 50.513 -25.675 -20.964 1 24.52 ? O5 S6P 702 A 1 
HETATM 12 O O6 S6P . . . D 3 51.334 -23.186 -20.542 1 23.2 ? O6 S6P 702 A 1 
HETATM 13 P P S6P . . . D 3 51.641 -21.688 -20.132 1 23.27 ? P S6P 702 A 1 
HETATM 14 O O1P S6P . . . D 3 50.333 -20.961 -19.989 1 24.52 ? O1P S6P 702 A 1 
HETATM 15 O O2P S6P . . . D 3 52.577 -21.705 -18.84 1 19.81 ? O2P S6P 702 A 1 
HETATM 16 O O3P S6P . . . D 3 52.466 -21.024 -21.381 1 23.24 ? O3P S6P 702 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#