data_4OP3 # _model_server_result.job_id fWWOlCDAKe8eZ3CElUpXfA _model_server_result.datetime_utc '2024-11-23 11:05:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4op3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":716}' # _entry.id 4OP3 # _exptl.entry_id 4OP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OP3 _cell.length_a 148.913 _cell.length_b 148.913 _cell.length_c 132.403 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,JA 1 1 B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,KA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 FA N N ? 5 GA N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 4OP3 _atom_sites.fract_transf_matrix[1][1] 0.006715 _atom_sites.fract_transf_matrix[1][2] 0.003877 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2UY A 1 701 1 2UY UNL . D 3 S6P A 1 702 1 S6P S6P . E 4 IOD A 1 703 5 IOD IOD . F 4 IOD A 1 704 6 IOD IOD . G 4 IOD A 1 705 7 IOD IOD . H 4 IOD A 1 706 9 IOD IOD . I 4 IOD A 1 707 10 IOD IOD . J 4 IOD A 1 708 12 IOD IOD . K 4 IOD A 1 709 14 IOD IOD . L 4 IOD A 1 710 17 IOD IOD . M 4 IOD A 1 711 19 IOD IOD . N 4 IOD A 1 712 20 IOD IOD . O 4 IOD A 1 713 21 IOD IOD . P 4 IOD A 1 714 25 IOD IOD . Q 2 2UY B 1 701 1 2UY UNL . R 3 S6P B 1 702 1 S6P S6P . S 4 IOD B 1 703 1 IOD IOD . T 4 IOD B 1 704 2 IOD IOD . U 4 IOD B 1 705 3 IOD IOD . V 4 IOD B 1 706 4 IOD IOD . W 4 IOD B 1 707 8 IOD IOD . X 4 IOD B 1 708 11 IOD IOD . Y 4 IOD B 1 709 13 IOD IOD . Z 4 IOD B 1 710 15 IOD IOD . AA 4 IOD B 1 711 16 IOD IOD . BA 4 IOD B 1 712 18 IOD IOD . CA 4 IOD B 1 713 22 IOD IOD . DA 4 IOD B 1 714 23 IOD IOD . EA 4 IOD B 1 715 24 IOD IOD . FA 5 GOL B 1 716 1 GOL GOL . GA 5 GOL B 1 717 2 GOL GOL . HA 6 SO4 B 1 718 1 SO4 SO4 . IA 6 SO4 B 1 719 3 SO4 SO4 . JA 7 HOH A 1 801 3 HOH HOH . JA 7 HOH A 2 802 7 HOH HOH . JA 7 HOH A 3 803 8 HOH HOH . JA 7 HOH A 4 804 10 HOH HOH . JA 7 HOH A 5 805 12 HOH HOH . JA 7 HOH A 6 806 13 HOH HOH . JA 7 HOH A 7 807 14 HOH HOH . JA 7 HOH A 8 808 16 HOH HOH . JA 7 HOH A 9 809 24 HOH HOH . JA 7 HOH A 10 810 32 HOH HOH . JA 7 HOH A 11 811 34 HOH HOH . JA 7 HOH A 12 812 35 HOH HOH . JA 7 HOH A 13 813 36 HOH HOH . JA 7 HOH A 14 814 38 HOH HOH . JA 7 HOH A 15 815 40 HOH HOH . JA 7 HOH A 16 816 43 HOH HOH . JA 7 HOH A 17 817 50 HOH HOH . JA 7 HOH A 18 818 51 HOH HOH . JA 7 HOH A 19 819 52 HOH HOH . JA 7 HOH A 20 820 53 HOH HOH . JA 7 HOH A 21 821 54 HOH HOH . JA 7 HOH A 22 822 55 HOH HOH . JA 7 HOH A 23 823 57 HOH HOH . JA 7 HOH A 24 824 59 HOH HOH . JA 7 HOH A 25 825 60 HOH HOH . JA 7 HOH A 26 826 61 HOH HOH . KA 7 HOH B 1 801 1 HOH HOH . KA 7 HOH B 2 802 2 HOH HOH . KA 7 HOH B 3 803 4 HOH HOH . KA 7 HOH B 4 804 5 HOH HOH . KA 7 HOH B 5 805 6 HOH HOH . KA 7 HOH B 6 806 9 HOH HOH . KA 7 HOH B 7 807 11 HOH HOH . KA 7 HOH B 8 808 15 HOH HOH . KA 7 HOH B 9 809 17 HOH HOH . KA 7 HOH B 10 810 18 HOH HOH . KA 7 HOH B 11 811 19 HOH HOH . KA 7 HOH B 12 812 20 HOH HOH . KA 7 HOH B 13 813 21 HOH HOH . KA 7 HOH B 14 814 22 HOH HOH . KA 7 HOH B 15 815 23 HOH HOH . KA 7 HOH B 16 816 25 HOH HOH . KA 7 HOH B 17 817 26 HOH HOH . KA 7 HOH B 18 818 27 HOH HOH . KA 7 HOH B 19 819 28 HOH HOH . KA 7 HOH B 20 820 29 HOH HOH . KA 7 HOH B 21 821 30 HOH HOH . KA 7 HOH B 22 822 31 HOH HOH . KA 7 HOH B 23 823 33 HOH HOH . KA 7 HOH B 24 824 37 HOH HOH . KA 7 HOH B 25 825 39 HOH HOH . KA 7 HOH B 26 826 41 HOH HOH . KA 7 HOH B 27 827 42 HOH HOH . KA 7 HOH B 28 828 44 HOH HOH . KA 7 HOH B 29 829 45 HOH HOH . KA 7 HOH B 30 830 46 HOH HOH . KA 7 HOH B 31 831 47 HOH HOH . KA 7 HOH B 32 832 48 HOH HOH . KA 7 HOH B 33 833 49 HOH HOH . KA 7 HOH B 34 834 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . FA 5 54.831 1.543 26.297 1 51.01 ? C1 GOL 716 B 1 HETATM 2 O O1 GOL . . . FA 5 54.289 0.281 26.746 1 50.1 ? O1 GOL 716 B 1 HETATM 3 C C2 GOL . . . FA 5 54.018 2.096 25.114 1 52.21 ? C2 GOL 716 B 1 HETATM 4 O O2 GOL . . . FA 5 53.128 3.125 25.548 1 46.1 ? O2 GOL 716 B 1 HETATM 5 C C3 GOL . . . FA 5 54.898 2.738 24.034 1 57.75 ? C3 GOL 716 B 1 HETATM 6 O O3 GOL . . . FA 5 55.586 1.789 23.208 1 60.92 ? O3 GOL 716 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #