data_4OP9 # _model_server_result.job_id QhojTiUIvtpBsHHVScP4PA _model_server_result.datetime_utc '2025-07-27 20:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4op9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4OP9 # _exptl.entry_id 4OP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OP9 _cell.length_a 80.109 _cell.length_b 96.175 _cell.length_c 105.407 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.109 96.175 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.109 0 105.407 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.175 105.407 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A O ILE 89 A ILE 88 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O TYR 92 A TYR 91 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc3 A O ILE 95 A ILE 94 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc4 A OE1 GLU 137 A GLU 136 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc5 C NA NA . A NA 402 1_555 D O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OP9 _atom_sites.fract_transf_matrix[1][1] 0.012483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZA A 1 401 300 AZA AZA . C 3 NA A 1 402 850 NA NA . D 4 HOH A 1 501 301 HOH HOH . D 4 HOH A 2 502 302 HOH HOH . D 4 HOH A 3 503 303 HOH HOH . D 4 HOH A 4 504 304 HOH HOH . D 4 HOH A 5 505 305 HOH HOH . D 4 HOH A 6 506 306 HOH HOH . D 4 HOH A 7 507 307 HOH HOH . D 4 HOH A 8 508 308 HOH HOH . D 4 HOH A 9 509 309 HOH HOH . D 4 HOH A 10 510 310 HOH HOH . D 4 HOH A 11 511 311 HOH HOH . D 4 HOH A 12 512 312 HOH HOH . D 4 HOH A 13 513 313 HOH HOH . D 4 HOH A 14 514 314 HOH HOH . D 4 HOH A 15 515 315 HOH HOH . D 4 HOH A 16 516 316 HOH HOH . D 4 HOH A 17 517 317 HOH HOH . D 4 HOH A 18 518 318 HOH HOH . D 4 HOH A 19 519 319 HOH HOH . D 4 HOH A 20 520 320 HOH HOH . D 4 HOH A 21 521 321 HOH HOH . D 4 HOH A 22 522 322 HOH HOH . D 4 HOH A 23 523 323 HOH HOH . D 4 HOH A 24 524 324 HOH HOH . D 4 HOH A 25 525 325 HOH HOH . D 4 HOH A 26 526 326 HOH HOH . D 4 HOH A 27 527 327 HOH HOH . D 4 HOH A 28 528 328 HOH HOH . D 4 HOH A 29 529 329 HOH HOH . D 4 HOH A 30 530 330 HOH HOH . D 4 HOH A 31 531 331 HOH HOH . D 4 HOH A 32 532 332 HOH HOH . D 4 HOH A 33 533 333 HOH HOH . D 4 HOH A 34 534 334 HOH HOH . D 4 HOH A 35 535 335 HOH HOH . D 4 HOH A 36 536 336 HOH HOH . D 4 HOH A 37 537 337 HOH HOH . D 4 HOH A 38 538 338 HOH HOH . D 4 HOH A 39 539 339 HOH HOH . D 4 HOH A 40 540 340 HOH HOH . D 4 HOH A 41 541 341 HOH HOH . D 4 HOH A 42 542 342 HOH HOH . D 4 HOH A 43 543 343 HOH HOH . D 4 HOH A 44 544 344 HOH HOH . D 4 HOH A 45 545 345 HOH HOH . D 4 HOH A 46 546 346 HOH HOH . D 4 HOH A 47 547 347 HOH HOH . D 4 HOH A 48 548 348 HOH HOH . D 4 HOH A 49 549 349 HOH HOH . D 4 HOH A 50 550 350 HOH HOH . D 4 HOH A 51 551 351 HOH HOH . D 4 HOH A 52 552 352 HOH HOH . D 4 HOH A 53 553 353 HOH HOH . D 4 HOH A 54 554 354 HOH HOH . D 4 HOH A 55 555 355 HOH HOH . D 4 HOH A 56 556 356 HOH HOH . D 4 HOH A 57 557 357 HOH HOH . D 4 HOH A 58 558 358 HOH HOH . D 4 HOH A 59 559 359 HOH HOH . D 4 HOH A 60 560 360 HOH HOH . D 4 HOH A 61 561 361 HOH HOH . D 4 HOH A 62 562 362 HOH HOH . D 4 HOH A 63 563 363 HOH HOH . D 4 HOH A 64 564 364 HOH HOH . D 4 HOH A 65 565 365 HOH HOH . D 4 HOH A 66 566 366 HOH HOH . D 4 HOH A 67 567 367 HOH HOH . D 4 HOH A 68 568 368 HOH HOH . D 4 HOH A 69 569 369 HOH HOH . D 4 HOH A 70 570 370 HOH HOH . D 4 HOH A 71 571 371 HOH HOH . D 4 HOH A 72 572 372 HOH HOH . D 4 HOH A 73 573 373 HOH HOH . D 4 HOH A 74 574 374 HOH HOH . D 4 HOH A 75 575 375 HOH HOH . D 4 HOH A 76 576 376 HOH HOH . D 4 HOH A 77 577 377 HOH HOH . D 4 HOH A 78 578 378 HOH HOH . D 4 HOH A 79 579 380 HOH HOH . D 4 HOH A 80 580 381 HOH HOH . D 4 HOH A 81 581 382 HOH HOH . D 4 HOH A 82 582 383 HOH HOH . D 4 HOH A 83 583 384 HOH HOH . D 4 HOH A 84 584 385 HOH HOH . D 4 HOH A 85 585 386 HOH HOH . D 4 HOH A 86 586 387 HOH HOH . D 4 HOH A 87 587 388 HOH HOH . D 4 HOH A 88 588 389 HOH HOH . D 4 HOH A 89 589 390 HOH HOH . D 4 HOH A 90 590 391 HOH HOH . D 4 HOH A 91 591 392 HOH HOH . D 4 HOH A 92 592 393 HOH HOH . D 4 HOH A 93 593 394 HOH HOH . D 4 HOH A 94 594 395 HOH HOH . D 4 HOH A 95 595 396 HOH HOH . D 4 HOH A 96 596 397 HOH HOH . D 4 HOH A 97 597 398 HOH HOH . D 4 HOH A 98 598 399 HOH HOH . D 4 HOH A 99 599 400 HOH HOH . D 4 HOH A 100 600 402 HOH HOH . D 4 HOH A 101 601 403 HOH HOH . D 4 HOH A 102 602 404 HOH HOH . D 4 HOH A 103 603 405 HOH HOH . D 4 HOH A 104 604 406 HOH HOH . D 4 HOH A 105 605 407 HOH HOH . D 4 HOH A 106 606 408 HOH HOH . D 4 HOH A 107 607 409 HOH HOH . D 4 HOH A 108 608 410 HOH HOH . D 4 HOH A 109 609 411 HOH HOH . D 4 HOH A 110 610 412 HOH HOH . D 4 HOH A 111 611 413 HOH HOH . D 4 HOH A 112 612 414 HOH HOH . D 4 HOH A 113 613 415 HOH HOH . D 4 HOH A 114 614 416 HOH HOH . D 4 HOH A 115 615 417 HOH HOH . D 4 HOH A 116 616 418 HOH HOH . D 4 HOH A 117 617 419 HOH HOH . D 4 HOH A 118 618 420 HOH HOH . D 4 HOH A 119 619 422 HOH HOH . D 4 HOH A 120 620 423 HOH HOH . D 4 HOH A 121 621 424 HOH HOH . D 4 HOH A 122 622 425 HOH HOH . D 4 HOH A 123 623 426 HOH HOH . D 4 HOH A 124 624 427 HOH HOH . D 4 HOH A 125 625 428 HOH HOH . D 4 HOH A 126 626 429 HOH HOH . D 4 HOH A 127 627 430 HOH HOH . D 4 HOH A 128 628 432 HOH HOH . D 4 HOH A 129 629 433 HOH HOH . D 4 HOH A 130 630 435 HOH HOH . D 4 HOH A 131 631 436 HOH HOH . D 4 HOH A 132 632 438 HOH HOH . D 4 HOH A 133 633 439 HOH HOH . D 4 HOH A 134 634 440 HOH HOH . D 4 HOH A 135 635 441 HOH HOH . D 4 HOH A 136 636 442 HOH HOH . D 4 HOH A 137 637 443 HOH HOH . D 4 HOH A 138 638 444 HOH HOH . D 4 HOH A 139 639 445 HOH HOH . D 4 HOH A 140 640 446 HOH HOH . D 4 HOH A 141 641 447 HOH HOH . D 4 HOH A 142 642 448 HOH HOH . D 4 HOH A 143 643 449 HOH HOH . D 4 HOH A 144 644 450 HOH HOH . D 4 HOH A 145 645 451 HOH HOH . D 4 HOH A 146 646 454 HOH HOH . D 4 HOH A 147 647 455 HOH HOH . D 4 HOH A 148 648 458 HOH HOH . D 4 HOH A 149 649 459 HOH HOH . D 4 HOH A 150 650 460 HOH HOH . D 4 HOH A 151 651 461 HOH HOH . D 4 HOH A 152 652 462 HOH HOH . D 4 HOH A 153 653 464 HOH HOH . D 4 HOH A 154 654 467 HOH HOH . D 4 HOH A 155 655 468 HOH HOH . D 4 HOH A 156 656 470 HOH HOH . D 4 HOH A 157 657 471 HOH HOH . D 4 HOH A 158 658 475 HOH HOH . D 4 HOH A 159 659 476 HOH HOH . D 4 HOH A 160 660 477 HOH HOH . D 4 HOH A 161 661 478 HOH HOH . D 4 HOH A 162 662 479 HOH HOH . D 4 HOH A 163 663 480 HOH HOH . D 4 HOH A 164 664 481 HOH HOH . D 4 HOH A 165 665 483 HOH HOH . D 4 HOH A 166 666 484 HOH HOH . D 4 HOH A 167 667 487 HOH HOH . D 4 HOH A 168 668 488 HOH HOH . D 4 HOH A 169 669 489 HOH HOH . D 4 HOH A 170 670 490 HOH HOH . D 4 HOH A 171 671 491 HOH HOH . D 4 HOH A 172 672 493 HOH HOH . D 4 HOH A 173 673 494 HOH HOH . D 4 HOH A 174 674 495 HOH HOH . D 4 HOH A 175 675 496 HOH HOH . D 4 HOH A 176 676 498 HOH HOH . D 4 HOH A 177 677 499 HOH HOH . D 4 HOH A 178 678 500 HOH HOH . D 4 HOH A 179 679 501 HOH HOH . D 4 HOH A 180 680 502 HOH HOH . D 4 HOH A 181 681 503 HOH HOH . D 4 HOH A 182 682 505 HOH HOH . D 4 HOH A 183 683 506 HOH HOH . D 4 HOH A 184 684 508 HOH HOH . D 4 HOH A 185 685 509 HOH HOH . D 4 HOH A 186 686 510 HOH HOH . D 4 HOH A 187 687 511 HOH HOH . D 4 HOH A 188 688 512 HOH HOH . D 4 HOH A 189 689 514 HOH HOH . D 4 HOH A 190 690 516 HOH HOH . D 4 HOH A 191 691 517 HOH HOH . D 4 HOH A 192 692 522 HOH HOH . D 4 HOH A 193 693 525 HOH HOH . D 4 HOH A 194 694 528 HOH HOH . D 4 HOH A 195 695 532 HOH HOH . D 4 HOH A 196 696 535 HOH HOH . D 4 HOH A 197 697 536 HOH HOH . D 4 HOH A 198 698 537 HOH HOH . D 4 HOH A 199 699 538 HOH HOH . D 4 HOH A 200 700 550 HOH HOH . D 4 HOH A 201 701 552 HOH HOH . D 4 HOH A 202 702 556 HOH HOH . D 4 HOH A 203 703 562 HOH HOH . D 4 HOH A 204 704 581 HOH HOH . D 4 HOH A 205 705 583 HOH HOH . D 4 HOH A 206 706 591 HOH HOH . D 4 HOH A 207 707 602 HOH HOH . D 4 HOH A 208 708 619 HOH HOH . D 4 HOH A 209 709 625 HOH HOH . D 4 HOH A 210 710 639 HOH HOH . D 4 HOH A 211 711 658 HOH HOH . D 4 HOH A 212 712 666 HOH HOH . D 4 HOH A 213 713 684 HOH HOH . D 4 HOH A 214 714 697 HOH HOH . D 4 HOH A 215 715 727 HOH HOH . D 4 HOH A 216 716 729 HOH HOH . D 4 HOH A 217 717 749 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.276 _atom_site.Cartn_y 71.197 _atom_site.Cartn_z 22.005 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #