data_4OPG # _model_server_result.job_id QkDNRB30H6lFneTiVj1DtQ _model_server_result.datetime_utc '2024-11-05 19:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4opg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4OPG # _exptl.entry_id 4OPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OPG _cell.length_a 63.232 _cell.length_b 81.7 _cell.length_c 105.857 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 311 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 336 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 335 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.04 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H35 N9 O15 P2' _chem_comp.formula_weight 787.566 _chem_comp.id FDA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OPG _atom_sites.fract_transf_matrix[1][1] 0.015815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDA A 1 501 454 FDA FDA . C 3 GRG A 1 502 455 GRG GRG . D 3 GRG A 1 503 456 GRG GRG . E 4 SO4 A 1 504 457 SO4 SO4 . F 4 SO4 A 1 505 458 SO4 SO4 . G 5 HOH A 1 601 14 HOH HOH . G 5 HOH A 2 602 15 HOH HOH . G 5 HOH A 3 603 16 HOH HOH . G 5 HOH A 4 604 17 HOH HOH . G 5 HOH A 5 605 19 HOH HOH . G 5 HOH A 6 606 20 HOH HOH . G 5 HOH A 7 607 21 HOH HOH . G 5 HOH A 8 608 22 HOH HOH . G 5 HOH A 9 609 23 HOH HOH . G 5 HOH A 10 610 24 HOH HOH . G 5 HOH A 11 611 25 HOH HOH . G 5 HOH A 12 612 26 HOH HOH . G 5 HOH A 13 613 27 HOH HOH . G 5 HOH A 14 614 28 HOH HOH . G 5 HOH A 15 615 29 HOH HOH . G 5 HOH A 16 616 30 HOH HOH . G 5 HOH A 17 617 31 HOH HOH . G 5 HOH A 18 618 32 HOH HOH . G 5 HOH A 19 619 33 HOH HOH . G 5 HOH A 20 620 34 HOH HOH . G 5 HOH A 21 621 35 HOH HOH . G 5 HOH A 22 622 36 HOH HOH . G 5 HOH A 23 623 37 HOH HOH . G 5 HOH A 24 624 38 HOH HOH . G 5 HOH A 25 625 39 HOH HOH . G 5 HOH A 26 626 40 HOH HOH . G 5 HOH A 27 627 41 HOH HOH . G 5 HOH A 28 628 42 HOH HOH . G 5 HOH A 29 629 43 HOH HOH . G 5 HOH A 30 630 44 HOH HOH . G 5 HOH A 31 631 47 HOH HOH . G 5 HOH A 32 632 48 HOH HOH . G 5 HOH A 33 633 49 HOH HOH . G 5 HOH A 34 634 50 HOH HOH . G 5 HOH A 35 635 51 HOH HOH . G 5 HOH A 36 636 53 HOH HOH . G 5 HOH A 37 637 54 HOH HOH . G 5 HOH A 38 638 55 HOH HOH . G 5 HOH A 39 639 56 HOH HOH . G 5 HOH A 40 640 58 HOH HOH . G 5 HOH A 41 641 59 HOH HOH . G 5 HOH A 42 642 60 HOH HOH . G 5 HOH A 43 643 61 HOH HOH . G 5 HOH A 44 644 62 HOH HOH . G 5 HOH A 45 645 63 HOH HOH . G 5 HOH A 46 646 64 HOH HOH . G 5 HOH A 47 647 65 HOH HOH . G 5 HOH A 48 648 66 HOH HOH . G 5 HOH A 49 649 67 HOH HOH . G 5 HOH A 50 650 68 HOH HOH . G 5 HOH A 51 651 69 HOH HOH . G 5 HOH A 52 652 70 HOH HOH . G 5 HOH A 53 653 71 HOH HOH . G 5 HOH A 54 654 72 HOH HOH . G 5 HOH A 55 655 73 HOH HOH . G 5 HOH A 56 656 74 HOH HOH . G 5 HOH A 57 657 75 HOH HOH . G 5 HOH A 58 658 76 HOH HOH . G 5 HOH A 59 659 77 HOH HOH . G 5 HOH A 60 660 78 HOH HOH . G 5 HOH A 61 661 79 HOH HOH . G 5 HOH A 62 662 80 HOH HOH . G 5 HOH A 63 663 81 HOH HOH . G 5 HOH A 64 664 82 HOH HOH . G 5 HOH A 65 665 85 HOH HOH . G 5 HOH A 66 666 86 HOH HOH . G 5 HOH A 67 667 87 HOH HOH . G 5 HOH A 68 668 88 HOH HOH . G 5 HOH A 69 669 91 HOH HOH . G 5 HOH A 70 670 92 HOH HOH . G 5 HOH A 71 671 93 HOH HOH . G 5 HOH A 72 672 94 HOH HOH . G 5 HOH A 73 673 95 HOH HOH . G 5 HOH A 74 674 96 HOH HOH . G 5 HOH A 75 675 97 HOH HOH . G 5 HOH A 76 676 98 HOH HOH . G 5 HOH A 77 677 99 HOH HOH . G 5 HOH A 78 678 100 HOH HOH . G 5 HOH A 79 679 101 HOH HOH . G 5 HOH A 80 680 102 HOH HOH . G 5 HOH A 81 681 103 HOH HOH . G 5 HOH A 82 682 104 HOH HOH . G 5 HOH A 83 683 106 HOH HOH . G 5 HOH A 84 684 107 HOH HOH . G 5 HOH A 85 685 109 HOH HOH . G 5 HOH A 86 686 110 HOH HOH . G 5 HOH A 87 687 111 HOH HOH . G 5 HOH A 88 688 112 HOH HOH . G 5 HOH A 89 689 113 HOH HOH . G 5 HOH A 90 690 114 HOH HOH . G 5 HOH A 91 691 116 HOH HOH . G 5 HOH A 92 692 117 HOH HOH . G 5 HOH A 93 693 118 HOH HOH . G 5 HOH A 94 694 119 HOH HOH . G 5 HOH A 95 695 120 HOH HOH . G 5 HOH A 96 696 121 HOH HOH . G 5 HOH A 97 697 123 HOH HOH . G 5 HOH A 98 698 126 HOH HOH . G 5 HOH A 99 699 129 HOH HOH . G 5 HOH A 100 700 130 HOH HOH . G 5 HOH A 101 701 131 HOH HOH . G 5 HOH A 102 702 132 HOH HOH . G 5 HOH A 103 703 133 HOH HOH . G 5 HOH A 104 704 134 HOH HOH . G 5 HOH A 105 705 135 HOH HOH . G 5 HOH A 106 706 136 HOH HOH . G 5 HOH A 107 707 137 HOH HOH . G 5 HOH A 108 708 138 HOH HOH . G 5 HOH A 109 709 139 HOH HOH . G 5 HOH A 110 710 140 HOH HOH . G 5 HOH A 111 711 142 HOH HOH . G 5 HOH A 112 712 143 HOH HOH . G 5 HOH A 113 713 144 HOH HOH . G 5 HOH A 114 714 145 HOH HOH . G 5 HOH A 115 715 146 HOH HOH . G 5 HOH A 116 716 147 HOH HOH . G 5 HOH A 117 717 148 HOH HOH . G 5 HOH A 118 718 149 HOH HOH . G 5 HOH A 119 719 150 HOH HOH . G 5 HOH A 120 720 151 HOH HOH . G 5 HOH A 121 721 152 HOH HOH . G 5 HOH A 122 722 153 HOH HOH . G 5 HOH A 123 723 154 HOH HOH . G 5 HOH A 124 724 155 HOH HOH . G 5 HOH A 125 725 156 HOH HOH . G 5 HOH A 126 726 157 HOH HOH . G 5 HOH A 127 727 158 HOH HOH . G 5 HOH A 128 728 160 HOH HOH . G 5 HOH A 129 729 161 HOH HOH . G 5 HOH A 130 730 162 HOH HOH . G 5 HOH A 131 731 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDA . . . B 2 -11.948 23.816 -6.344 1 19.72 ? PA FDA 501 A 1 HETATM 2 O O1A FDA . . . B 2 -10.509 23.514 -6.523 1 23.76 ? O1A FDA 501 A 1 HETATM 3 O O2A FDA . . . B 2 -12.51 24.894 -7.275 1 21.71 ? O2A FDA 501 A 1 HETATM 4 O O5B FDA . . . B 2 -12.211 24.16 -4.835 1 23.81 ? O5B FDA 501 A 1 HETATM 5 C C5B FDA . . . B 2 -11.259 23.773 -3.826 1 23.3 ? C5B FDA 501 A 1 HETATM 6 C C4B FDA . . . B 2 -11.195 24.883 -2.813 1 22.09 ? C4B FDA 501 A 1 HETATM 7 O O4B FDA . . . B 2 -10.85 24.337 -1.521 1 21.58 ? O4B FDA 501 A 1 HETATM 8 C C3B FDA . . . B 2 -10.175 25.984 -3.115 1 21.09 ? C3B FDA 501 A 1 HETATM 9 O O3B FDA . . . B 2 -10.76 27.272 -2.965 1 22.86 ? O3B FDA 501 A 1 HETATM 10 C C2B FDA . . . B 2 -9.053 25.717 -2.105 1 24.36 ? C2B FDA 501 A 1 HETATM 11 O O2B FDA . . . B 2 -8.413 26.921 -1.696 1 20.66 ? O2B FDA 501 A 1 HETATM 12 C C1B FDA . . . B 2 -9.828 25.115 -0.939 1 24.1 ? C1B FDA 501 A 1 HETATM 13 N N9A FDA . . . B 2 -9.04 24.249 -0.07 1 23.41 ? N9A FDA 501 A 1 HETATM 14 C C8A FDA . . . B 2 -8.257 23.189 -0.445 1 20.86 ? C8A FDA 501 A 1 HETATM 15 N N7A FDA . . . B 2 -7.665 22.582 0.557 1 25.09 ? N7A FDA 501 A 1 HETATM 16 C C5A FDA . . . B 2 -8.09 23.294 1.669 1 23.54 ? C5A FDA 501 A 1 HETATM 17 C C6A FDA . . . B 2 -7.823 23.152 3.045 1 24.45 ? C6A FDA 501 A 1 HETATM 18 N N6A FDA . . . B 2 -7.034 22.201 3.554 1 21.55 ? N6A FDA 501 A 1 HETATM 19 N N1A FDA . . . B 2 -8.411 24.027 3.891 1 28.19 ? N1A FDA 501 A 1 HETATM 20 C C2A FDA . . . B 2 -9.203 24.976 3.387 1 27.97 ? C2A FDA 501 A 1 HETATM 21 N N3A FDA . . . B 2 -9.531 25.205 2.114 1 26.48 ? N3A FDA 501 A 1 HETATM 22 C C4A FDA . . . B 2 -8.94 24.322 1.299 1 23.24 ? C4A FDA 501 A 1 HETATM 23 N N1 FDA . . . B 2 -15.192 22.533 -15.43 1 24.11 ? N1 FDA 501 A 1 HETATM 24 C C2 FDA . . . B 2 -16.297 22.898 -16.155 1 21.92 ? C2 FDA 501 A 1 HETATM 25 O O2 FDA . . . B 2 -17.429 22.559 -15.821 1 22.56 ? O2 FDA 501 A 1 HETATM 26 N N3 FDA . . . B 2 -16.073 23.68 -17.261 1 23.09 ? N3 FDA 501 A 1 HETATM 27 C C4 FDA . . . B 2 -14.856 23.955 -17.853 1 24.48 ? C4 FDA 501 A 1 HETATM 28 O O4 FDA . . . B 2 -14.796 24.677 -18.847 1 28.1 ? O4 FDA 501 A 1 HETATM 29 C C4X FDA . . . B 2 -13.762 23.364 -17.172 1 24.97 ? C4X FDA 501 A 1 HETATM 30 N N5 FDA . . . B 2 -12.502 23.5 -17.684 1 20.28 ? N5 FDA 501 A 1 HETATM 31 C C5X FDA . . . B 2 -11.399 23.251 -16.884 1 20.35 ? C5X FDA 501 A 1 HETATM 32 C C6 FDA . . . B 2 -10.122 23.666 -17.253 1 19.06 ? C6 FDA 501 A 1 HETATM 33 C C7 FDA . . . B 2 -9.019 23.43 -16.44 1 21.05 ? C7 FDA 501 A 1 HETATM 34 C C7M FDA . . . B 2 -7.665 23.936 -16.864 1 20.53 ? C7M FDA 501 A 1 HETATM 35 C C8 FDA . . . B 2 -9.19 22.744 -15.227 1 19.69 ? C8 FDA 501 A 1 HETATM 36 C C8M FDA . . . B 2 -8.023 22.484 -14.312 1 18.51 ? C8M FDA 501 A 1 HETATM 37 C C9 FDA . . . B 2 -10.46 22.313 -14.863 1 18.8 ? C9 FDA 501 A 1 HETATM 38 C C9A FDA . . . B 2 -11.561 22.565 -15.673 1 20.91 ? C9A FDA 501 A 1 HETATM 39 N N10 FDA . . . B 2 -12.861 22.149 -15.322 1 21.53 ? N10 FDA 501 A 1 HETATM 40 C C10 FDA . . . B 2 -13.945 22.683 -15.982 1 23.03 ? C10 FDA 501 A 1 HETATM 41 C C1' FDA . . . B 2 -13.107 21.425 -14.057 1 16.5 ? C1' FDA 501 A 1 HETATM 42 C C2' FDA . . . B 2 -13.481 22.395 -12.937 1 17.95 ? C2' FDA 501 A 1 HETATM 43 O O2' FDA . . . B 2 -12.558 23.485 -12.91 1 19.57 ? O2' FDA 501 A 1 HETATM 44 C C3' FDA . . . B 2 -13.468 21.663 -11.594 1 16.74 ? C3' FDA 501 A 1 HETATM 45 O O3' FDA . . . B 2 -13.95 20.34 -11.797 1 19.4 ? O3' FDA 501 A 1 HETATM 46 C C4' FDA . . . B 2 -14.32 22.327 -10.51 1 17.6 ? C4' FDA 501 A 1 HETATM 47 O O4' FDA . . . B 2 -14.009 23.719 -10.427 1 15.6 ? O4' FDA 501 A 1 HETATM 48 C C5' FDA . . . B 2 -14.137 21.656 -9.167 1 17.32 ? C5' FDA 501 A 1 HETATM 49 O O5' FDA . . . B 2 -14.743 22.45 -8.128 1 16.21 ? O5' FDA 501 A 1 HETATM 50 P P FDA . . . B 2 -14.348 22.199 -6.618 1 18.24 ? P FDA 501 A 1 HETATM 51 O O1P FDA . . . B 2 -15.055 23.193 -5.776 1 20.74 ? O1P FDA 501 A 1 HETATM 52 O O2P FDA . . . B 2 -14.498 20.724 -6.237 1 18.05 ? O2P FDA 501 A 1 HETATM 53 O O3P FDA . . . B 2 -12.784 22.486 -6.611 1 16.59 ? O3P FDA 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #