data_4OPG # _model_server_result.job_id u4LqFrbalVMsjuy3iZPnlA _model_server_result.datetime_utc '2024-11-23 04:00:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4opg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4OPG # _exptl.entry_id 4OPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERANYLGERANYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OPG _cell.length_a 63.232 _cell.length_b 81.7 _cell.length_c 105.857 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 311 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 336 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 335 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.04 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H36 O7 P2' _chem_comp.formula_weight 450.443 _chem_comp.id GRG _chem_comp.mon_nstd_flag . _chem_comp.name 'GERANYLGERANYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OPG _atom_sites.fract_transf_matrix[1][1] 0.015815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDA A 1 501 454 FDA FDA . C 3 GRG A 1 502 455 GRG GRG . D 3 GRG A 1 503 456 GRG GRG . E 4 SO4 A 1 504 457 SO4 SO4 . F 4 SO4 A 1 505 458 SO4 SO4 . G 5 HOH A 1 601 14 HOH HOH . G 5 HOH A 2 602 15 HOH HOH . G 5 HOH A 3 603 16 HOH HOH . G 5 HOH A 4 604 17 HOH HOH . G 5 HOH A 5 605 19 HOH HOH . G 5 HOH A 6 606 20 HOH HOH . G 5 HOH A 7 607 21 HOH HOH . G 5 HOH A 8 608 22 HOH HOH . G 5 HOH A 9 609 23 HOH HOH . G 5 HOH A 10 610 24 HOH HOH . G 5 HOH A 11 611 25 HOH HOH . G 5 HOH A 12 612 26 HOH HOH . G 5 HOH A 13 613 27 HOH HOH . G 5 HOH A 14 614 28 HOH HOH . G 5 HOH A 15 615 29 HOH HOH . G 5 HOH A 16 616 30 HOH HOH . G 5 HOH A 17 617 31 HOH HOH . G 5 HOH A 18 618 32 HOH HOH . G 5 HOH A 19 619 33 HOH HOH . G 5 HOH A 20 620 34 HOH HOH . G 5 HOH A 21 621 35 HOH HOH . G 5 HOH A 22 622 36 HOH HOH . G 5 HOH A 23 623 37 HOH HOH . G 5 HOH A 24 624 38 HOH HOH . G 5 HOH A 25 625 39 HOH HOH . G 5 HOH A 26 626 40 HOH HOH . G 5 HOH A 27 627 41 HOH HOH . G 5 HOH A 28 628 42 HOH HOH . G 5 HOH A 29 629 43 HOH HOH . G 5 HOH A 30 630 44 HOH HOH . G 5 HOH A 31 631 47 HOH HOH . G 5 HOH A 32 632 48 HOH HOH . G 5 HOH A 33 633 49 HOH HOH . G 5 HOH A 34 634 50 HOH HOH . G 5 HOH A 35 635 51 HOH HOH . G 5 HOH A 36 636 53 HOH HOH . G 5 HOH A 37 637 54 HOH HOH . G 5 HOH A 38 638 55 HOH HOH . G 5 HOH A 39 639 56 HOH HOH . G 5 HOH A 40 640 58 HOH HOH . G 5 HOH A 41 641 59 HOH HOH . G 5 HOH A 42 642 60 HOH HOH . G 5 HOH A 43 643 61 HOH HOH . G 5 HOH A 44 644 62 HOH HOH . G 5 HOH A 45 645 63 HOH HOH . G 5 HOH A 46 646 64 HOH HOH . G 5 HOH A 47 647 65 HOH HOH . G 5 HOH A 48 648 66 HOH HOH . G 5 HOH A 49 649 67 HOH HOH . G 5 HOH A 50 650 68 HOH HOH . G 5 HOH A 51 651 69 HOH HOH . G 5 HOH A 52 652 70 HOH HOH . G 5 HOH A 53 653 71 HOH HOH . G 5 HOH A 54 654 72 HOH HOH . G 5 HOH A 55 655 73 HOH HOH . G 5 HOH A 56 656 74 HOH HOH . G 5 HOH A 57 657 75 HOH HOH . G 5 HOH A 58 658 76 HOH HOH . G 5 HOH A 59 659 77 HOH HOH . G 5 HOH A 60 660 78 HOH HOH . G 5 HOH A 61 661 79 HOH HOH . G 5 HOH A 62 662 80 HOH HOH . G 5 HOH A 63 663 81 HOH HOH . G 5 HOH A 64 664 82 HOH HOH . G 5 HOH A 65 665 85 HOH HOH . G 5 HOH A 66 666 86 HOH HOH . G 5 HOH A 67 667 87 HOH HOH . G 5 HOH A 68 668 88 HOH HOH . G 5 HOH A 69 669 91 HOH HOH . G 5 HOH A 70 670 92 HOH HOH . G 5 HOH A 71 671 93 HOH HOH . G 5 HOH A 72 672 94 HOH HOH . G 5 HOH A 73 673 95 HOH HOH . G 5 HOH A 74 674 96 HOH HOH . G 5 HOH A 75 675 97 HOH HOH . G 5 HOH A 76 676 98 HOH HOH . G 5 HOH A 77 677 99 HOH HOH . G 5 HOH A 78 678 100 HOH HOH . G 5 HOH A 79 679 101 HOH HOH . G 5 HOH A 80 680 102 HOH HOH . G 5 HOH A 81 681 103 HOH HOH . G 5 HOH A 82 682 104 HOH HOH . G 5 HOH A 83 683 106 HOH HOH . G 5 HOH A 84 684 107 HOH HOH . G 5 HOH A 85 685 109 HOH HOH . G 5 HOH A 86 686 110 HOH HOH . G 5 HOH A 87 687 111 HOH HOH . G 5 HOH A 88 688 112 HOH HOH . G 5 HOH A 89 689 113 HOH HOH . G 5 HOH A 90 690 114 HOH HOH . G 5 HOH A 91 691 116 HOH HOH . G 5 HOH A 92 692 117 HOH HOH . G 5 HOH A 93 693 118 HOH HOH . G 5 HOH A 94 694 119 HOH HOH . G 5 HOH A 95 695 120 HOH HOH . G 5 HOH A 96 696 121 HOH HOH . G 5 HOH A 97 697 123 HOH HOH . G 5 HOH A 98 698 126 HOH HOH . G 5 HOH A 99 699 129 HOH HOH . G 5 HOH A 100 700 130 HOH HOH . G 5 HOH A 101 701 131 HOH HOH . G 5 HOH A 102 702 132 HOH HOH . G 5 HOH A 103 703 133 HOH HOH . G 5 HOH A 104 704 134 HOH HOH . G 5 HOH A 105 705 135 HOH HOH . G 5 HOH A 106 706 136 HOH HOH . G 5 HOH A 107 707 137 HOH HOH . G 5 HOH A 108 708 138 HOH HOH . G 5 HOH A 109 709 139 HOH HOH . G 5 HOH A 110 710 140 HOH HOH . G 5 HOH A 111 711 142 HOH HOH . G 5 HOH A 112 712 143 HOH HOH . G 5 HOH A 113 713 144 HOH HOH . G 5 HOH A 114 714 145 HOH HOH . G 5 HOH A 115 715 146 HOH HOH . G 5 HOH A 116 716 147 HOH HOH . G 5 HOH A 117 717 148 HOH HOH . G 5 HOH A 118 718 149 HOH HOH . G 5 HOH A 119 719 150 HOH HOH . G 5 HOH A 120 720 151 HOH HOH . G 5 HOH A 121 721 152 HOH HOH . G 5 HOH A 122 722 153 HOH HOH . G 5 HOH A 123 723 154 HOH HOH . G 5 HOH A 124 724 155 HOH HOH . G 5 HOH A 125 725 156 HOH HOH . G 5 HOH A 126 726 157 HOH HOH . G 5 HOH A 127 727 158 HOH HOH . G 5 HOH A 128 728 160 HOH HOH . G 5 HOH A 129 729 161 HOH HOH . G 5 HOH A 130 730 162 HOH HOH . G 5 HOH A 131 731 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 GRG . . . D 3 -12.406 12.372 -24.709 1 67.76 ? C20 GRG 503 A 1 HETATM 2 C C19 GRG . . . D 3 -10.108 12.51 -25.951 1 67.33 ? C19 GRG 503 A 1 HETATM 3 C C18 GRG . . . D 3 -11.597 12.793 -25.921 1 68.27 ? C18 GRG 503 A 1 HETATM 4 C C17 GRG . . . D 3 -12.178 13.419 -26.968 1 69.43 ? C17 GRG 503 A 1 HETATM 5 C C16 GRG . . . D 3 -13.665 13.705 -26.99 1 69.58 ? C16 GRG 503 A 1 HETATM 6 C C14 GRG . . . D 3 -16.247 14.262 -27.634 1 66.99 ? C14 GRG 503 A 1 HETATM 7 C C13 GRG . . . D 3 -15.571 15.174 -26.628 1 66.89 ? C13 GRG 503 A 1 HETATM 8 C C15 GRG . . . D 3 -14.09 15.011 -26.339 1 68.28 ? C15 GRG 503 A 1 HETATM 9 C C12 GRG . . . D 3 -16.303 16.124 -26.007 1 66 ? C12 GRG 503 A 1 HETATM 10 C C11 GRG . . . D 3 -17.779 16.227 -26.346 1 65.89 ? C11 GRG 503 A 1 HETATM 11 C C9 GRG . . . D 3 -18.365 17.587 -26.031 1 65.58 ? C9 GRG 503 A 1 HETATM 12 C C8 GRG . . . D 3 -19.855 17.421 -25.806 1 66.15 ? C8 GRG 503 A 1 HETATM 13 C C10 GRG . . . D 3 -20.741 16.846 -26.893 1 65.26 ? C10 GRG 503 A 1 HETATM 14 C C7 GRG . . . D 3 -20.391 17.783 -24.624 1 69.5 ? C7 GRG 503 A 1 HETATM 15 C C6 GRG . . . D 3 -21.873 17.619 -24.368 1 71.74 ? C6 GRG 503 A 1 HETATM 16 C C5 GRG . . . D 3 -22.537 18.969 -24.232 1 73.87 ? C5 GRG 503 A 1 HETATM 17 C C3 GRG . . . D 3 -22.505 19.427 -22.79 1 76.94 ? C3 GRG 503 A 1 HETATM 18 C C4 GRG . . . D 3 -21.321 20.219 -22.283 1 76.92 ? C4 GRG 503 A 1 HETATM 19 C C2 GRG . . . D 3 -23.535 19.131 -21.968 1 79.56 ? C2 GRG 503 A 1 HETATM 20 C C1 GRG . . . D 3 -23.555 19.58 -20.521 1 81.63 ? C1 GRG 503 A 1 HETATM 21 O O1 GRG . . . D 3 -22.614 18.879 -19.747 1 82.39 ? O1 GRG 503 A 1 HETATM 22 P PA GRG . . . D 3 -23.144 18.021 -18.532 1 64.61 ? PA GRG 503 A 1 HETATM 23 O O1A GRG . . . D 3 -22.841 16.564 -18.779 1 64.93 ? O1A GRG 503 A 1 HETATM 24 O O3A GRG . . . D 3 -24.713 18.181 -18.402 1 99.06 ? O3A GRG 503 A 1 HETATM 25 O O2A GRG . . . D 3 -22.462 18.497 -17.271 1 63.12 ? O2A GRG 503 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #