data_4OPI
#
_model_server_result.job_id            CKLl-jgC-uSRMzdZl7ssug 
_model_server_result.datetime_utc      '2024-11-23 03:30:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4opi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4OPI 
#
_exptl.entry_id    4OPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.566 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OPI 
_cell.length_a            63.792 
_cell.length_b            82.983 
_cell.length_c            106.376 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             311 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              310 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             336 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              335 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.042 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H35 N9 O15 P2' 
_chem_comp.formula_weight    787.566 
_chem_comp.id                FDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FDA doub 83 n n 
PA O2A FDA sing 84 n n 
PA O5B FDA sing 85 n n 
PA O3P FDA sing 86 n n 
O2A HOA2 FDA sing 87 n n 
O5B C5B FDA sing 88 n n 
C5B C4B FDA sing 89 n n 
C5B H51A FDA sing 90 n n 
C5B H52A FDA sing 91 n n 
C4B O4B FDA sing 92 n n 
C4B C3B FDA sing 93 n n 
C4B H4B FDA sing 94 n n 
O4B C1B FDA sing 95 n n 
C3B O3B FDA sing 96 n n 
C3B C2B FDA sing 97 n n 
C3B H3B FDA sing 98 n n 
O3B HO3A FDA sing 99 n n 
C2B O2B FDA sing 100 n n 
C2B C1B FDA sing 101 n n 
C2B H2B FDA sing 102 n n 
O2B HO2A FDA sing 103 n n 
C1B N9A FDA sing 104 n n 
C1B H1B FDA sing 105 n n 
N9A C8A FDA sing 106 n y 
N9A C4A FDA sing 107 n y 
C8A N7A FDA doub 108 n y 
C8A H8A FDA sing 109 n n 
N7A C5A FDA sing 110 n y 
C5A C6A FDA sing 111 n y 
C5A C4A FDA doub 112 n y 
C6A N6A FDA sing 113 n n 
C6A N1A FDA doub 114 n y 
N6A H61A FDA sing 115 n n 
N6A H62A FDA sing 116 n n 
N1A C2A FDA sing 117 n y 
C2A N3A FDA doub 118 n y 
C2A H2A FDA sing 119 n n 
N3A C4A FDA sing 120 n y 
N1 C2 FDA sing 121 n n 
N1 C10 FDA sing 122 n n 
N1 HN1 FDA sing 123 n n 
C2 O2 FDA doub 124 n n 
C2 N3 FDA sing 125 n n 
N3 C4 FDA sing 126 n n 
N3 HN3 FDA sing 127 n n 
C4 O4 FDA doub 128 n n 
C4 C4X FDA sing 129 n n 
C4X N5 FDA sing 130 n n 
C4X C10 FDA doub 131 n n 
N5 C5X FDA sing 132 n n 
N5 HN5 FDA sing 133 n n 
C5X C6 FDA doub 134 n y 
C5X C9A FDA sing 135 n y 
C6 C7 FDA sing 136 n y 
C6 H6 FDA sing 137 n n 
C7 C7M FDA sing 138 n n 
C7 C8 FDA doub 139 n y 
C7M HM71 FDA sing 140 n n 
C7M HM72 FDA sing 141 n n 
C7M HM73 FDA sing 142 n n 
C8 C8M FDA sing 143 n n 
C8 C9 FDA sing 144 n y 
C8M HM81 FDA sing 145 n n 
C8M HM82 FDA sing 146 n n 
C8M HM83 FDA sing 147 n n 
C9 C9A FDA doub 148 n y 
C9 H9 FDA sing 149 n n 
C9A N10 FDA sing 150 n n 
N10 C10 FDA sing 151 n n 
N10 C1' FDA sing 152 n n 
C1' C2' FDA sing 153 n n 
C1' "H1'1" FDA sing 154 n n 
C1' "H1'2" FDA sing 155 n n 
C2' O2' FDA sing 156 n n 
C2' C3' FDA sing 157 n n 
C2' H2' FDA sing 158 n n 
O2' HO2' FDA sing 159 n n 
C3' O3' FDA sing 160 n n 
C3' C4' FDA sing 161 n n 
C3' H3' FDA sing 162 n n 
O3' HO3' FDA sing 163 n n 
C4' O4' FDA sing 164 n n 
C4' C5' FDA sing 165 n n 
C4' H4' FDA sing 166 n n 
O4' HO4' FDA sing 167 n n 
C5' O5' FDA sing 168 n n 
C5' "H5'1" FDA sing 169 n n 
C5' "H5'2" FDA sing 170 n n 
O5' P FDA sing 171 n n 
P O1P FDA doub 172 n n 
P O2P FDA sing 173 n n 
P O3P FDA sing 174 n n 
O2P HOP2 FDA sing 175 n n 
#
_atom_sites.entry_id                     4OPI 
_atom_sites.fract_transf_matrix[1][1]    0.015676 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012051 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FDA A 1 501 454 FDA FDA . 
C 3 GRG A 1 502 455 GRG GRG . 
D 3 GRG A 1 503 456 GRG GRG . 
E 4 HOH A 1 601 1 HOH HOH . 
E 4 HOH A 2 602 2 HOH HOH . 
E 4 HOH A 3 603 3 HOH HOH . 
E 4 HOH A 4 604 4 HOH HOH . 
E 4 HOH A 5 605 5 HOH HOH . 
E 4 HOH A 6 606 6 HOH HOH . 
E 4 HOH A 7 607 7 HOH HOH . 
E 4 HOH A 8 608 8 HOH HOH . 
E 4 HOH A 9 609 9 HOH HOH . 
E 4 HOH A 10 610 10 HOH HOH . 
E 4 HOH A 11 611 11 HOH HOH . 
E 4 HOH A 12 612 12 HOH HOH . 
E 4 HOH A 13 613 13 HOH HOH . 
E 4 HOH A 14 614 14 HOH HOH . 
E 4 HOH A 15 615 15 HOH HOH . 
E 4 HOH A 16 616 16 HOH HOH . 
E 4 HOH A 17 617 17 HOH HOH . 
E 4 HOH A 18 618 18 HOH HOH . 
E 4 HOH A 19 619 19 HOH HOH . 
E 4 HOH A 20 620 20 HOH HOH . 
E 4 HOH A 21 621 21 HOH HOH . 
E 4 HOH A 22 622 22 HOH HOH . 
E 4 HOH A 23 623 23 HOH HOH . 
E 4 HOH A 24 624 24 HOH HOH . 
E 4 HOH A 25 625 25 HOH HOH . 
E 4 HOH A 26 626 26 HOH HOH . 
E 4 HOH A 27 627 27 HOH HOH . 
E 4 HOH A 28 628 28 HOH HOH . 
E 4 HOH A 29 629 29 HOH HOH . 
E 4 HOH A 30 630 30 HOH HOH . 
E 4 HOH A 31 631 31 HOH HOH . 
E 4 HOH A 32 632 32 HOH HOH . 
E 4 HOH A 33 633 33 HOH HOH . 
E 4 HOH A 34 634 34 HOH HOH . 
E 4 HOH A 35 635 35 HOH HOH . 
E 4 HOH A 36 636 37 HOH HOH . 
E 4 HOH A 37 637 38 HOH HOH . 
E 4 HOH A 38 638 39 HOH HOH . 
E 4 HOH A 39 639 40 HOH HOH . 
E 4 HOH A 40 640 41 HOH HOH . 
E 4 HOH A 41 641 43 HOH HOH . 
E 4 HOH A 42 642 44 HOH HOH . 
E 4 HOH A 43 643 45 HOH HOH . 
E 4 HOH A 44 644 46 HOH HOH . 
E 4 HOH A 45 645 47 HOH HOH . 
E 4 HOH A 46 646 48 HOH HOH . 
E 4 HOH A 47 647 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FDA . . . B 2 -12.233 23.923 -6.658 1 37.36 ? PA FDA 501 A 1 
HETATM 2 O O1A FDA . . . B 2 -10.794 23.641 -6.87 1 41.76 ? O1A FDA 501 A 1 
HETATM 3 O O2A FDA . . . B 2 -12.851 24.995 -7.558 1 47.45 ? O2A FDA 501 A 1 
HETATM 4 O O5B FDA . . . B 2 -12.46 24.252 -5.141 1 38 ? O5B FDA 501 A 1 
HETATM 5 C C5B FDA . . . B 2 -11.429 23.978 -4.176 1 32.14 ? C5B FDA 501 A 1 
HETATM 6 C C4B FDA . . . B 2 -11.468 25.073 -3.145 1 33.4 ? C4B FDA 501 A 1 
HETATM 7 O O4B FDA . . . B 2 -11.133 24.528 -1.85 1 40.44 ? O4B FDA 501 A 1 
HETATM 8 C C3B FDA . . . B 2 -10.508 26.238 -3.396 1 40.9 ? C3B FDA 501 A 1 
HETATM 9 O O3B FDA . . . B 2 -11.17 27.484 -3.207 1 35.69 ? O3B FDA 501 A 1 
HETATM 10 C C2B FDA . . . B 2 -9.387 25.995 -2.379 1 41.76 ? C2B FDA 501 A 1 
HETATM 11 O O2B FDA . . . B 2 -8.797 27.213 -1.94 1 42.18 ? O2B FDA 501 A 1 
HETATM 12 C C1B FDA . . . B 2 -10.153 25.338 -1.238 1 43.33 ? C1B FDA 501 A 1 
HETATM 13 N N9A FDA . . . B 2 -9.341 24.49 -0.374 1 45.69 ? N9A FDA 501 A 1 
HETATM 14 C C8A FDA . . . B 2 -8.551 23.436 -0.753 1 44.86 ? C8A FDA 501 A 1 
HETATM 15 N N7A FDA . . . B 2 -7.934 22.846 0.242 1 46.35 ? N7A FDA 501 A 1 
HETATM 16 C C5A FDA . . . B 2 -8.349 23.56 1.356 1 44.05 ? C5A FDA 501 A 1 
HETATM 17 C C6A FDA . . . B 2 -8.059 23.431 2.728 1 45.94 ? C6A FDA 501 A 1 
HETATM 18 N N6A FDA . . . B 2 -7.246 22.5 3.23 1 39.72 ? N6A FDA 501 A 1 
HETATM 19 N N1A FDA . . . B 2 -8.655 24.297 3.579 1 44.63 ? N1A FDA 501 A 1 
HETATM 20 C C2A FDA . . . B 2 -9.471 25.231 3.081 1 45.21 ? C2A FDA 501 A 1 
HETATM 21 N N3A FDA . . . B 2 -9.813 25.453 1.809 1 45.02 ? N3A FDA 501 A 1 
HETATM 22 C C4A FDA . . . B 2 -9.218 24.574 0.991 1 40.7 ? C4A FDA 501 A 1 
HETATM 23 N N1 FDA . . . B 2 -15.476 22.485 -15.758 1 38.82 ? N1 FDA 501 A 1 
HETATM 24 C C2 FDA . . . B 2 -16.559 22.999 -16.423 1 40.15 ? C2 FDA 501 A 1 
HETATM 25 O O2 FDA . . . B 2 -17.682 22.995 -15.928 1 37.65 ? O2 FDA 501 A 1 
HETATM 26 N N3 FDA . . . B 2 -16.319 23.507 -17.673 1 49.65 ? N3 FDA 501 A 1 
HETATM 27 C C4 FDA . . . B 2 -15.102 23.919 -18.177 1 50.79 ? C4 FDA 501 A 1 
HETATM 28 O O4 FDA . . . B 2 -15.052 24.688 -19.136 1 57.03 ? O4 FDA 501 A 1 
HETATM 29 C C4X FDA . . . B 2 -14.012 23.376 -17.451 1 44.68 ? C4X FDA 501 A 1 
HETATM 30 N N5 FDA . . . B 2 -12.739 23.551 -17.919 1 43.49 ? N5 FDA 501 A 1 
HETATM 31 C C5X FDA . . . B 2 -11.65 23.289 -17.104 1 50.26 ? C5X FDA 501 A 1 
HETATM 32 C C6 FDA . . . B 2 -10.365 23.695 -17.451 1 43.13 ? C6 FDA 501 A 1 
HETATM 33 C C7 FDA . . . B 2 -9.275 23.45 -16.623 1 41.6 ? C7 FDA 501 A 1 
HETATM 34 C C7M FDA . . . B 2 -7.91 23.94 -17.028 1 38.73 ? C7M FDA 501 A 1 
HETATM 35 C C8 FDA . . . B 2 -9.47 22.767 -15.413 1 45.04 ? C8 FDA 501 A 1 
HETATM 36 C C8M FDA . . . B 2 -8.319 22.496 -14.479 1 37.83 ? C8M FDA 501 A 1 
HETATM 37 C C9 FDA . . . B 2 -10.748 22.342 -15.068 1 43.65 ? C9 FDA 501 A 1 
HETATM 38 C C9A FDA . . . B 2 -11.835 22.6 -15.896 1 41.8 ? C9A FDA 501 A 1 
HETATM 39 N N10 FDA . . . B 2 -13.14 22.184 -15.566 1 37.01 ? N10 FDA 501 A 1 
HETATM 40 C C10 FDA . . . B 2 -14.216 22.687 -16.264 1 38.41 ? C10 FDA 501 A 1 
HETATM 41 C C1' FDA . . . B 2 -13.406 21.458 -14.305 1 38.4 ? C1' FDA 501 A 1 
HETATM 42 C C2' FDA . . . B 2 -13.814 22.427 -13.196 1 39.11 ? C2' FDA 501 A 1 
HETATM 43 O O2' FDA . . . B 2 -12.936 23.552 -13.199 1 40.83 ? O2' FDA 501 A 1 
HETATM 44 C C3' FDA . . . B 2 -13.745 21.726 -11.838 1 33.15 ? C3' FDA 501 A 1 
HETATM 45 O O3' FDA . . . B 2 -14.214 20.39 -11.975 1 32.86 ? O3' FDA 501 A 1 
HETATM 46 C C4' FDA . . . B 2 -14.568 22.419 -10.751 1 36.45 ? C4' FDA 501 A 1 
HETATM 47 O O4' FDA . . . B 2 -14.216 23.802 -10.683 1 35.56 ? O4' FDA 501 A 1 
HETATM 48 C C5' FDA . . . B 2 -14.397 21.752 -9.405 1 35.06 ? C5' FDA 501 A 1 
HETATM 49 O O5' FDA . . . B 2 -15.045 22.524 -8.373 1 29.48 ? O5' FDA 501 A 1 
HETATM 50 P P FDA . . . B 2 -14.619 22.297 -6.866 1 34.68 ? P FDA 501 A 1 
HETATM 51 O O1P FDA . . . B 2 -15.292 23.326 -6.042 1 29.65 ? O1P FDA 501 A 1 
HETATM 52 O O2P FDA . . . B 2 -14.777 20.832 -6.453 1 33.15 ? O2P FDA 501 A 1 
HETATM 53 O O3P FDA . . . B 2 -13.06 22.588 -6.905 1 30.49 ? O3P FDA 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           53 
#