data_4OPI # _model_server_result.job_id gHcKDjYBCwNuAQdO4jhTdA _model_server_result.datetime_utc '2024-11-23 03:21:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4opi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4OPI # _exptl.entry_id 4OPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERANYLGERANYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OPI _cell.length_a 63.792 _cell.length_b 82.983 _cell.length_c 106.376 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 311 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 336 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 335 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.042 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H36 O7 P2' _chem_comp.formula_weight 450.443 _chem_comp.id GRG _chem_comp.mon_nstd_flag . _chem_comp.name 'GERANYLGERANYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C18 GRG sing 222 n n C20 H201 GRG sing 223 n n C20 H202 GRG sing 224 n n C20 H203 GRG sing 225 n n C19 C18 GRG sing 226 n n C19 H191 GRG sing 227 n n C19 H192 GRG sing 228 n n C19 H193 GRG sing 229 n n C18 C17 GRG doub 230 n n C17 C16 GRG sing 231 n n C17 H17 GRG sing 232 n n C16 C15 GRG sing 233 n n C16 H161 GRG sing 234 n n C16 H162 GRG sing 235 n n C14 C13 GRG sing 236 n n C14 H141 GRG sing 237 n n C14 H142 GRG sing 238 n n C14 H143 GRG sing 239 n n C13 C15 GRG sing 240 n n C13 C12 GRG doub 241 e n C15 H151 GRG sing 242 n n C15 H152 GRG sing 243 n n C12 C11 GRG sing 244 n n C12 H12 GRG sing 245 n n C11 C9 GRG sing 246 n n C11 H111 GRG sing 247 n n C11 H112 GRG sing 248 n n C9 C8 GRG sing 249 n n C9 HC91 GRG sing 250 n n C9 HC92 GRG sing 251 n n C8 C10 GRG sing 252 n n C8 C7 GRG doub 253 e n C10 H101 GRG sing 254 n n C10 H102 GRG sing 255 n n C10 H103 GRG sing 256 n n C7 C6 GRG sing 257 n n C7 HC7 GRG sing 258 n n C6 C5 GRG sing 259 n n C6 HC61 GRG sing 260 n n C6 HC62 GRG sing 261 n n C5 C3 GRG sing 262 n n C5 HC51 GRG sing 263 n n C5 HC52 GRG sing 264 n n C3 C4 GRG sing 265 n n C3 C2 GRG doub 266 e n C4 HC41 GRG sing 267 n n C4 HC42 GRG sing 268 n n C4 HC43 GRG sing 269 n n C2 C1 GRG sing 270 n n C2 HC2 GRG sing 271 n n C1 O1 GRG sing 272 n n C1 HC11 GRG sing 273 n n C1 HC12 GRG sing 274 n n O1 PA GRG sing 275 n n PA O1A GRG sing 276 n n PA O3A GRG sing 277 n n PA O2A GRG doub 278 n n O1A H1AO GRG sing 279 n n O3A PB GRG sing 280 n n PB O1B GRG sing 281 n n PB O2B GRG sing 282 n n PB O3B GRG doub 283 n n O1B H1BO GRG sing 284 n n O2B H2BO GRG sing 285 n n # _atom_sites.entry_id 4OPI _atom_sites.fract_transf_matrix[1][1] 0.015676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDA A 1 501 454 FDA FDA . C 3 GRG A 1 502 455 GRG GRG . D 3 GRG A 1 503 456 GRG GRG . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 5 HOH HOH . E 4 HOH A 6 606 6 HOH HOH . E 4 HOH A 7 607 7 HOH HOH . E 4 HOH A 8 608 8 HOH HOH . E 4 HOH A 9 609 9 HOH HOH . E 4 HOH A 10 610 10 HOH HOH . E 4 HOH A 11 611 11 HOH HOH . E 4 HOH A 12 612 12 HOH HOH . E 4 HOH A 13 613 13 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 15 HOH HOH . E 4 HOH A 16 616 16 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 18 HOH HOH . E 4 HOH A 19 619 19 HOH HOH . E 4 HOH A 20 620 20 HOH HOH . E 4 HOH A 21 621 21 HOH HOH . E 4 HOH A 22 622 22 HOH HOH . E 4 HOH A 23 623 23 HOH HOH . E 4 HOH A 24 624 24 HOH HOH . E 4 HOH A 25 625 25 HOH HOH . E 4 HOH A 26 626 26 HOH HOH . E 4 HOH A 27 627 27 HOH HOH . E 4 HOH A 28 628 28 HOH HOH . E 4 HOH A 29 629 29 HOH HOH . E 4 HOH A 30 630 30 HOH HOH . E 4 HOH A 31 631 31 HOH HOH . E 4 HOH A 32 632 32 HOH HOH . E 4 HOH A 33 633 33 HOH HOH . E 4 HOH A 34 634 34 HOH HOH . E 4 HOH A 35 635 35 HOH HOH . E 4 HOH A 36 636 37 HOH HOH . E 4 HOH A 37 637 38 HOH HOH . E 4 HOH A 38 638 39 HOH HOH . E 4 HOH A 39 639 40 HOH HOH . E 4 HOH A 40 640 41 HOH HOH . E 4 HOH A 41 641 43 HOH HOH . E 4 HOH A 42 642 44 HOH HOH . E 4 HOH A 43 643 45 HOH HOH . E 4 HOH A 44 644 46 HOH HOH . E 4 HOH A 45 645 47 HOH HOH . E 4 HOH A 46 646 48 HOH HOH . E 4 HOH A 47 647 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 GRG . . . C 3 -12.559 22.48 -21.075 0.8 64.23 ? C20 GRG 502 A 1 HETATM 2 C C19 GRG . . . C 3 -11.928 20.555 -19.406 0.8 54.81 ? C19 GRG 502 A 1 HETATM 3 C C18 GRG . . . C 3 -12.969 21.348 -20.166 0.8 62.27 ? C18 GRG 502 A 1 HETATM 4 C C17 GRG . . . C 3 -14.275 21.059 -20.033 0.8 63.14 ? C17 GRG 502 A 1 HETATM 5 C C16 GRG . . . C 3 -15.302 21.856 -20.807 0.8 60.29 ? C16 GRG 502 A 1 HETATM 6 C C14 GRG . . . C 3 -17.565 21.203 -22.969 0.8 57.03 ? C14 GRG 502 A 1 HETATM 7 C C13 GRG . . . C 3 -17.638 21.74 -21.557 0.8 58.97 ? C13 GRG 502 A 1 HETATM 8 C C15 GRG . . . C 3 -16.661 21.291 -20.505 0.8 61.15 ? C15 GRG 502 A 1 HETATM 9 C C12 GRG . . . C 3 -18.579 22.634 -21.198 0.8 57.51 ? C12 GRG 502 A 1 HETATM 10 C C11 GRG . . . C 3 -19.606 23.137 -22.176 0.8 44.59 ? C11 GRG 502 A 1 HETATM 11 C C9 GRG . . . C 3 -20.812 23.551 -21.371 0.8 41.63 ? C9 GRG 502 A 1 HETATM 12 C C8 GRG . . . C 3 -21.701 24.447 -22.192 0.8 52.63 ? C8 GRG 502 A 1 HETATM 13 C C10 GRG . . . C 3 -21.591 25.953 -22.106 0.8 56.12 ? C10 GRG 502 A 1 HETATM 14 C C7 GRG . . . C 3 -22.593 23.871 -23.018 0.8 57.54 ? C7 GRG 502 A 1 HETATM 15 C C6 GRG . . . C 3 -23.517 24.698 -23.888 0.8 66.89 ? C6 GRG 502 A 1 HETATM 16 C C5 GRG . . . C 3 -23.724 23.999 -25.21 0.8 70.92 ? C5 GRG 502 A 1 HETATM 17 C C3 GRG . . . C 3 -24.524 22.718 -25.054 0.8 78.06 ? C3 GRG 502 A 1 HETATM 18 C C4 GRG . . . C 3 -24.533 21.681 -26.159 0.8 81 ? C4 GRG 502 A 1 HETATM 19 C C2 GRG . . . C 3 -25.236 22.5 -23.934 0.8 85.03 ? C2 GRG 502 A 1 HETATM 20 C C1 GRG . . . C 3 -26.034 21.239 -23.729 0.8 92.4 ? C1 GRG 502 A 1 HETATM 21 O O1 GRG . . . C 3 -26.679 21.367 -22.485 0.8 100.55 ? O1 GRG 502 A 1 HETATM 22 P PA GRG . . . C 3 -28.239 21.563 -22.562 0.8 322.11 ? PA GRG 502 A 1 HETATM 23 O O1A GRG . . . C 3 -28.938 20.764 -21.489 0.8 325.18 ? O1A GRG 502 A 1 HETATM 24 O O3A GRG . . . C 3 -28.649 21.022 -23.988 0.8 103.86 ? O3A GRG 502 A 1 HETATM 25 O O2A GRG . . . C 3 -28.58 23.024 -22.404 0.8 324.99 ? O2A GRG 502 A 1 HETATM 26 P PB GRG . . . C 3 -30.083 21.144 -24.628 0.8 132.5 ? PB GRG 502 A 1 HETATM 27 O O1B GRG . . . C 3 -30.53 19.766 -25.052 0.8 130.88 ? O1B GRG 502 A 1 HETATM 28 O O2B GRG . . . C 3 -31.038 21.699 -23.599 0.8 134.71 ? O2B GRG 502 A 1 HETATM 29 O O3B GRG . . . C 3 -30.033 22.054 -25.833 0.8 132.38 ? O3B GRG 502 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #