data_4OPJ # _model_server_result.job_id cmv5zrPDhamieUluDd6hnQ _model_server_result.datetime_utc '2024-10-18 22:23:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4opj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 4OPJ # _exptl.entry_id 4OPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.87 _cell.angle_beta 101.77 _cell.angle_gamma 89.75 _cell.entry_id 4OPJ _cell.length_a 42.387 _cell.length_b 47.501 _cell.length_c 55.216 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,H 1 1 A,C,E,G,I 1 2 A,E,G 2 3 B,D,F,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 42.387 0 0 2 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -42.387 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DA 5 B DA 5 1_555 A P TCY 6 B TCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale2 A O3' TCY 6 B TCY 6 1_555 A P DT 7 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale3 B O3' DA 5 D DA 5 1_555 B P TCY 6 D TCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale4 B O3' TCY 6 D TCY 6 1_555 B P DT 7 D DT 7 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.619 ? covale ? covale5 B O3' TCY 6 D TCY 6 1_555 B P DT 7 D DT 7 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.664 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 265 n n C1 C2 GOL sing 266 n n C1 H11 GOL sing 267 n n C1 H12 GOL sing 268 n n O1 HO1 GOL sing 269 n n C2 O2 GOL sing 270 n n C2 C3 GOL sing 271 n n C2 H2 GOL sing 272 n n O2 HO2 GOL sing 273 n n C3 O3 GOL sing 274 n n C3 H31 GOL sing 275 n n C3 H32 GOL sing 276 n n O3 HO3 GOL sing 277 n n # _atom_sites.entry_id 4OPJ _atom_sites.fract_transf_matrix[1][1] 0.023592 _atom_sites.fract_transf_matrix[1][2] -0.000103 _atom_sites.fract_transf_matrix[1][3] 0.004989 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021052 _atom_sites.fract_transf_matrix[2][3] 0.004113 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL B 1 101 2 GOL GOL . F 3 GOL C 1 201 1 GOL GOL . G 4 HOH B 1 201 9 HOH HOH . G 4 HOH B 2 202 14 HOH HOH . G 4 HOH B 3 203 19 HOH HOH . G 4 HOH B 4 204 32 HOH HOH . G 4 HOH B 5 205 35 HOH HOH . G 4 HOH B 6 206 42 HOH HOH . G 4 HOH B 7 207 56 HOH HOH . G 4 HOH B 8 208 69 HOH HOH . G 4 HOH B 9 209 72 HOH HOH . G 4 HOH B 10 210 74 HOH HOH . G 4 HOH B 11 211 76 HOH HOH . G 4 HOH B 12 212 81 HOH HOH . G 4 HOH B 13 213 83 HOH HOH . G 4 HOH B 14 214 85 HOH HOH . G 4 HOH B 15 215 92 HOH HOH . G 4 HOH B 16 216 95 HOH HOH . G 4 HOH B 17 217 109 HOH HOH . G 4 HOH B 18 218 115 HOH HOH . G 4 HOH B 19 219 136 HOH HOH . G 4 HOH B 20 220 153 HOH HOH . G 4 HOH B 21 221 155 HOH HOH . G 4 HOH B 22 222 170 HOH HOH . H 4 HOH D 1 101 48 HOH HOH . H 4 HOH D 2 102 80 HOH HOH . H 4 HOH D 3 103 82 HOH HOH . H 4 HOH D 4 104 87 HOH HOH . H 4 HOH D 5 105 119 HOH HOH . H 4 HOH D 6 106 120 HOH HOH . H 4 HOH D 7 107 123 HOH HOH . H 4 HOH D 8 108 124 HOH HOH . H 4 HOH D 9 109 134 HOH HOH . H 4 HOH D 10 110 135 HOH HOH . H 4 HOH D 11 111 138 HOH HOH . H 4 HOH D 12 112 160 HOH HOH . H 4 HOH D 13 113 166 HOH HOH . I 4 HOH A 1 201 1 HOH HOH . I 4 HOH A 2 202 2 HOH HOH . I 4 HOH A 3 203 3 HOH HOH . I 4 HOH A 4 204 4 HOH HOH . I 4 HOH A 5 205 5 HOH HOH . I 4 HOH A 6 206 7 HOH HOH . I 4 HOH A 7 207 15 HOH HOH . I 4 HOH A 8 208 18 HOH HOH . I 4 HOH A 9 209 20 HOH HOH . I 4 HOH A 10 210 22 HOH HOH . I 4 HOH A 11 211 24 HOH HOH . I 4 HOH A 12 212 25 HOH HOH . I 4 HOH A 13 213 26 HOH HOH . I 4 HOH A 14 214 27 HOH HOH . I 4 HOH A 15 215 28 HOH HOH . I 4 HOH A 16 216 29 HOH HOH . I 4 HOH A 17 217 31 HOH HOH . I 4 HOH A 18 218 33 HOH HOH . I 4 HOH A 19 219 34 HOH HOH . I 4 HOH A 20 220 36 HOH HOH . I 4 HOH A 21 221 41 HOH HOH . I 4 HOH A 22 222 43 HOH HOH . I 4 HOH A 23 223 45 HOH HOH . I 4 HOH A 24 224 46 HOH HOH . I 4 HOH A 25 225 49 HOH HOH . I 4 HOH A 26 226 50 HOH HOH . I 4 HOH A 27 227 53 HOH HOH . I 4 HOH A 28 228 57 HOH HOH . I 4 HOH A 29 229 58 HOH HOH . I 4 HOH A 30 230 59 HOH HOH . I 4 HOH A 31 231 60 HOH HOH . I 4 HOH A 32 232 61 HOH HOH . I 4 HOH A 33 233 62 HOH HOH . I 4 HOH A 34 234 63 HOH HOH . I 4 HOH A 35 235 64 HOH HOH . I 4 HOH A 36 236 65 HOH HOH . I 4 HOH A 37 237 66 HOH HOH . I 4 HOH A 38 238 70 HOH HOH . I 4 HOH A 39 239 71 HOH HOH . I 4 HOH A 40 240 73 HOH HOH . I 4 HOH A 41 241 77 HOH HOH . I 4 HOH A 42 242 84 HOH HOH . I 4 HOH A 43 243 88 HOH HOH . I 4 HOH A 44 244 90 HOH HOH . I 4 HOH A 45 245 91 HOH HOH . I 4 HOH A 46 246 96 HOH HOH . I 4 HOH A 47 247 97 HOH HOH . I 4 HOH A 48 248 98 HOH HOH . I 4 HOH A 49 249 100 HOH HOH . I 4 HOH A 50 250 102 HOH HOH . I 4 HOH A 51 251 103 HOH HOH . I 4 HOH A 52 252 105 HOH HOH . I 4 HOH A 53 253 106 HOH HOH . I 4 HOH A 54 254 107 HOH HOH . I 4 HOH A 55 255 108 HOH HOH . I 4 HOH A 56 256 111 HOH HOH . I 4 HOH A 57 257 116 HOH HOH . I 4 HOH A 58 258 117 HOH HOH . I 4 HOH A 59 259 118 HOH HOH . I 4 HOH A 60 260 125 HOH HOH . I 4 HOH A 61 261 129 HOH HOH . I 4 HOH A 62 262 131 HOH HOH . I 4 HOH A 63 263 132 HOH HOH . I 4 HOH A 64 264 133 HOH HOH . I 4 HOH A 65 265 137 HOH HOH . I 4 HOH A 66 266 139 HOH HOH . I 4 HOH A 67 267 140 HOH HOH . I 4 HOH A 68 268 141 HOH HOH . I 4 HOH A 69 269 143 HOH HOH . I 4 HOH A 70 270 144 HOH HOH . I 4 HOH A 71 271 147 HOH HOH . I 4 HOH A 72 272 149 HOH HOH . I 4 HOH A 73 273 150 HOH HOH . I 4 HOH A 74 274 151 HOH HOH . I 4 HOH A 75 275 156 HOH HOH . I 4 HOH A 76 276 159 HOH HOH . I 4 HOH A 77 277 163 HOH HOH . I 4 HOH A 78 278 169 HOH HOH . I 4 HOH A 79 279 171 HOH HOH . J 4 HOH C 1 301 6 HOH HOH . J 4 HOH C 2 302 8 HOH HOH . J 4 HOH C 3 303 10 HOH HOH . J 4 HOH C 4 304 12 HOH HOH . J 4 HOH C 5 305 13 HOH HOH . J 4 HOH C 6 306 16 HOH HOH . J 4 HOH C 7 307 17 HOH HOH . J 4 HOH C 8 308 21 HOH HOH . J 4 HOH C 9 309 23 HOH HOH . J 4 HOH C 10 310 30 HOH HOH . J 4 HOH C 11 311 37 HOH HOH . J 4 HOH C 12 312 38 HOH HOH . J 4 HOH C 13 313 39 HOH HOH . J 4 HOH C 14 314 40 HOH HOH . J 4 HOH C 15 315 44 HOH HOH . J 4 HOH C 16 316 47 HOH HOH . J 4 HOH C 17 317 51 HOH HOH . J 4 HOH C 18 318 52 HOH HOH . J 4 HOH C 19 319 54 HOH HOH . J 4 HOH C 20 320 55 HOH HOH . J 4 HOH C 21 321 67 HOH HOH . J 4 HOH C 22 322 68 HOH HOH . J 4 HOH C 23 323 75 HOH HOH . J 4 HOH C 24 324 78 HOH HOH . J 4 HOH C 25 325 79 HOH HOH . J 4 HOH C 26 326 86 HOH HOH . J 4 HOH C 27 327 89 HOH HOH . J 4 HOH C 28 328 93 HOH HOH . J 4 HOH C 29 329 94 HOH HOH . J 4 HOH C 30 330 99 HOH HOH . J 4 HOH C 31 331 101 HOH HOH . J 4 HOH C 32 332 104 HOH HOH . J 4 HOH C 33 333 110 HOH HOH . J 4 HOH C 34 334 112 HOH HOH . J 4 HOH C 35 335 113 HOH HOH . J 4 HOH C 36 336 114 HOH HOH . J 4 HOH C 37 337 121 HOH HOH . J 4 HOH C 38 338 122 HOH HOH . J 4 HOH C 39 339 126 HOH HOH . J 4 HOH C 40 340 127 HOH HOH . J 4 HOH C 41 341 128 HOH HOH . J 4 HOH C 42 342 130 HOH HOH . J 4 HOH C 43 343 142 HOH HOH . J 4 HOH C 44 344 145 HOH HOH . J 4 HOH C 45 345 146 HOH HOH . J 4 HOH C 46 346 148 HOH HOH . J 4 HOH C 47 347 152 HOH HOH . J 4 HOH C 48 348 154 HOH HOH . J 4 HOH C 49 349 157 HOH HOH . J 4 HOH C 50 350 158 HOH HOH . J 4 HOH C 51 351 161 HOH HOH . J 4 HOH C 52 352 162 HOH HOH . J 4 HOH C 53 353 164 HOH HOH . J 4 HOH C 54 354 165 HOH HOH . J 4 HOH C 55 355 167 HOH HOH . J 4 HOH C 56 356 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 9.641 -0.356 -9.592 1 43.89 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . E 3 8.415 0.3 -9.126 1 34.34 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . E 3 9.732 -0.24 -11.103 1 44.68 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . E 3 9.976 1.193 -11.501 1 35.06 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . E 3 10.737 -1.288 -11.638 1 53.21 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . E 3 11.588 -1.839 -10.606 1 48.16 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #