data_4OPT
#
_model_server_result.job_id            d8YRmteHUrafXYzGw-PzuQ 
_model_server_result.datetime_utc      '2024-11-23 03:35:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4opt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4OPT 
#
_exptl.entry_id    4OPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.566 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OPT 
_cell.length_a            63.652 
_cell.length_b            82.198 
_cell.length_c            106.363 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             311 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              310 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             336 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              335 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.033 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H35 N9 O15 P2' 
_chem_comp.formula_weight    787.566 
_chem_comp.id                FDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FDA doub 83 n n 
PA O2A FDA sing 84 n n 
PA O5B FDA sing 85 n n 
PA O3P FDA sing 86 n n 
O2A HOA2 FDA sing 87 n n 
O5B C5B FDA sing 88 n n 
C5B C4B FDA sing 89 n n 
C5B H51A FDA sing 90 n n 
C5B H52A FDA sing 91 n n 
C4B O4B FDA sing 92 n n 
C4B C3B FDA sing 93 n n 
C4B H4B FDA sing 94 n n 
O4B C1B FDA sing 95 n n 
C3B O3B FDA sing 96 n n 
C3B C2B FDA sing 97 n n 
C3B H3B FDA sing 98 n n 
O3B HO3A FDA sing 99 n n 
C2B O2B FDA sing 100 n n 
C2B C1B FDA sing 101 n n 
C2B H2B FDA sing 102 n n 
O2B HO2A FDA sing 103 n n 
C1B N9A FDA sing 104 n n 
C1B H1B FDA sing 105 n n 
N9A C8A FDA sing 106 n y 
N9A C4A FDA sing 107 n y 
C8A N7A FDA doub 108 n y 
C8A H8A FDA sing 109 n n 
N7A C5A FDA sing 110 n y 
C5A C6A FDA sing 111 n y 
C5A C4A FDA doub 112 n y 
C6A N6A FDA sing 113 n n 
C6A N1A FDA doub 114 n y 
N6A H61A FDA sing 115 n n 
N6A H62A FDA sing 116 n n 
N1A C2A FDA sing 117 n y 
C2A N3A FDA doub 118 n y 
C2A H2A FDA sing 119 n n 
N3A C4A FDA sing 120 n y 
N1 C2 FDA sing 121 n n 
N1 C10 FDA sing 122 n n 
N1 HN1 FDA sing 123 n n 
C2 O2 FDA doub 124 n n 
C2 N3 FDA sing 125 n n 
N3 C4 FDA sing 126 n n 
N3 HN3 FDA sing 127 n n 
C4 O4 FDA doub 128 n n 
C4 C4X FDA sing 129 n n 
C4X N5 FDA sing 130 n n 
C4X C10 FDA doub 131 n n 
N5 C5X FDA sing 132 n n 
N5 HN5 FDA sing 133 n n 
C5X C6 FDA doub 134 n y 
C5X C9A FDA sing 135 n y 
C6 C7 FDA sing 136 n y 
C6 H6 FDA sing 137 n n 
C7 C7M FDA sing 138 n n 
C7 C8 FDA doub 139 n y 
C7M HM71 FDA sing 140 n n 
C7M HM72 FDA sing 141 n n 
C7M HM73 FDA sing 142 n n 
C8 C8M FDA sing 143 n n 
C8 C9 FDA sing 144 n y 
C8M HM81 FDA sing 145 n n 
C8M HM82 FDA sing 146 n n 
C8M HM83 FDA sing 147 n n 
C9 C9A FDA doub 148 n y 
C9 H9 FDA sing 149 n n 
C9A N10 FDA sing 150 n n 
N10 C10 FDA sing 151 n n 
N10 C1' FDA sing 152 n n 
C1' C2' FDA sing 153 n n 
C1' "H1'1" FDA sing 154 n n 
C1' "H1'2" FDA sing 155 n n 
C2' O2' FDA sing 156 n n 
C2' C3' FDA sing 157 n n 
C2' H2' FDA sing 158 n n 
O2' HO2' FDA sing 159 n n 
C3' O3' FDA sing 160 n n 
C3' C4' FDA sing 161 n n 
C3' H3' FDA sing 162 n n 
O3' HO3' FDA sing 163 n n 
C4' O4' FDA sing 164 n n 
C4' C5' FDA sing 165 n n 
C4' H4' FDA sing 166 n n 
O4' HO4' FDA sing 167 n n 
C5' O5' FDA sing 168 n n 
C5' "H5'1" FDA sing 169 n n 
C5' "H5'2" FDA sing 170 n n 
O5' P FDA sing 171 n n 
P O1P FDA doub 172 n n 
P O2P FDA sing 173 n n 
P O3P FDA sing 174 n n 
O2P HOP2 FDA sing 175 n n 
#
_atom_sites.entry_id                     4OPT 
_atom_sites.fract_transf_matrix[1][1]    0.01571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009402 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FDA A 1 501 454 FDA FDA . 
C 3 GRG A 1 502 455 GRG GRG . 
D 4 SO4 A 1 503 456 SO4 SO4 . 
E 5 HOH A 1 601 1 HOH HOH . 
E 5 HOH A 2 602 2 HOH HOH . 
E 5 HOH A 3 603 3 HOH HOH . 
E 5 HOH A 4 604 4 HOH HOH . 
E 5 HOH A 5 605 5 HOH HOH . 
E 5 HOH A 6 606 7 HOH HOH . 
E 5 HOH A 7 607 8 HOH HOH . 
E 5 HOH A 8 608 9 HOH HOH . 
E 5 HOH A 9 609 10 HOH HOH . 
E 5 HOH A 10 610 11 HOH HOH . 
E 5 HOH A 11 611 12 HOH HOH . 
E 5 HOH A 12 612 13 HOH HOH . 
E 5 HOH A 13 613 14 HOH HOH . 
E 5 HOH A 14 614 15 HOH HOH . 
E 5 HOH A 15 615 17 HOH HOH . 
E 5 HOH A 16 616 18 HOH HOH . 
E 5 HOH A 17 617 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FDA . . . B 2 -12.138 23.841 -6.617 1 33.07 ? PA FDA 501 A 1 
HETATM 2 O O1A FDA . . . B 2 -10.712 23.496 -6.775 1 37.88 ? O1A FDA 501 A 1 
HETATM 3 O O2A FDA . . . B 2 -12.591 25.09 -7.376 1 36.57 ? O2A FDA 501 A 1 
HETATM 4 O O5B FDA . . . B 2 -12.449 23.923 -5.069 1 40.33 ? O5B FDA 501 A 1 
HETATM 5 C C5B FDA . . . B 2 -11.376 23.842 -4.109 1 39.2 ? C5B FDA 501 A 1 
HETATM 6 C C4B FDA . . . B 2 -11.475 25.004 -3.155 1 41.07 ? C4B FDA 501 A 1 
HETATM 7 O O4B FDA . . . B 2 -11.22 24.545 -1.808 1 44.83 ? O4B FDA 501 A 1 
HETATM 8 C C3B FDA . . . B 2 -10.491 26.145 -3.413 1 44.93 ? C3B FDA 501 A 1 
HETATM 9 O O3B FDA . . . B 2 -11.1 27.409 -3.178 1 46.84 ? O3B FDA 501 A 1 
HETATM 10 C C2B FDA . . . B 2 -9.366 25.854 -2.418 1 44.4 ? C2B FDA 501 A 1 
HETATM 11 O O2B FDA . . . B 2 -8.69 27.044 -2.028 1 47.03 ? O2B FDA 501 A 1 
HETATM 12 C C1B FDA . . . B 2 -10.154 25.282 -1.243 1 43.55 ? C1B FDA 501 A 1 
HETATM 13 N N9A FDA . . . B 2 -9.387 24.397 -0.374 1 42.17 ? N9A FDA 501 A 1 
HETATM 14 C C8A FDA . . . B 2 -8.654 23.299 -0.739 1 37.52 ? C8A FDA 501 A 1 
HETATM 15 N N7A FDA . . . B 2 -8.064 22.683 0.259 1 37.88 ? N7A FDA 501 A 1 
HETATM 16 C C5A FDA . . . B 2 -8.441 23.438 1.364 1 41.45 ? C5A FDA 501 A 1 
HETATM 17 C C6A FDA . . . B 2 -8.145 23.311 2.738 1 43.44 ? C6A FDA 501 A 1 
HETATM 18 N N6A FDA . . . B 2 -7.38 22.345 3.25 1 39.45 ? N6A FDA 501 A 1 
HETATM 19 N N1A FDA . . . B 2 -8.676 24.229 3.578 1 48.41 ? N1A FDA 501 A 1 
HETATM 20 C C2A FDA . . . B 2 -9.444 25.198 3.072 1 45.39 ? C2A FDA 501 A 1 
HETATM 21 N N3A FDA . . . B 2 -9.791 25.414 1.8 1 43.99 ? N3A FDA 501 A 1 
HETATM 22 C C4A FDA . . . B 2 -9.25 24.49 0.992 1 42.89 ? C4A FDA 501 A 1 
HETATM 23 N N1 FDA . . . B 2 -15.512 22.438 -15.68 1 39.45 ? N1 FDA 501 A 1 
HETATM 24 C C2 FDA . . . B 2 -16.61 22.774 -16.433 1 39.4 ? C2 FDA 501 A 1 
HETATM 25 O O2 FDA . . . B 2 -17.753 22.613 -16.014 1 36.65 ? O2 FDA 501 A 1 
HETATM 26 N N3 FDA . . . B 2 -16.363 23.298 -17.675 1 48.07 ? N3 FDA 501 A 1 
HETATM 27 C C4 FDA . . . B 2 -15.16 23.785 -18.144 1 48.4 ? C4 FDA 501 A 1 
HETATM 28 O O4 FDA . . . B 2 -15.128 24.56 -19.098 1 53.87 ? O4 FDA 501 A 1 
HETATM 29 C C4X FDA . . . B 2 -14.062 23.282 -17.404 1 43.15 ? C4X FDA 501 A 1 
HETATM 30 N N5 FDA . . . B 2 -12.795 23.449 -17.885 1 39.46 ? N5 FDA 501 A 1 
HETATM 31 C C5X FDA . . . B 2 -11.696 23.202 -17.078 1 37.57 ? C5X FDA 501 A 1 
HETATM 32 C C6 FDA . . . B 2 -10.414 23.588 -17.455 1 34.19 ? C6 FDA 501 A 1 
HETATM 33 C C7 FDA . . . B 2 -9.313 23.351 -16.641 1 37.11 ? C7 FDA 501 A 1 
HETATM 34 C C7M FDA . . . B 2 -7.95 23.815 -17.082 1 37.84 ? C7M FDA 501 A 1 
HETATM 35 C C8 FDA . . . B 2 -9.493 22.695 -15.413 1 38.36 ? C8 FDA 501 A 1 
HETATM 36 C C8M FDA . . . B 2 -8.329 22.429 -14.496 1 32.75 ? C8M FDA 501 A 1 
HETATM 37 C C9 FDA . . . B 2 -10.769 22.293 -15.038 1 37.99 ? C9 FDA 501 A 1 
HETATM 38 C C9A FDA . . . B 2 -11.868 22.544 -15.852 1 36.84 ? C9A FDA 501 A 1 
HETATM 39 N N10 FDA . . . B 2 -13.171 22.153 -15.488 1 35.69 ? N10 FDA 501 A 1 
HETATM 40 C C10 FDA . . . B 2 -14.254 22.625 -16.199 1 39.91 ? C10 FDA 501 A 1 
HETATM 41 C C1' FDA . . . B 2 -13.421 21.452 -14.211 1 37.1 ? C1' FDA 501 A 1 
HETATM 42 C C2' FDA . . . B 2 -13.788 22.441 -13.107 1 37.46 ? C2' FDA 501 A 1 
HETATM 43 O O2' FDA . . . B 2 -12.84 23.509 -13.078 1 39.37 ? O2' FDA 501 A 1 
HETATM 44 C C3' FDA . . . B 2 -13.8 21.726 -11.755 1 41.92 ? C3' FDA 501 A 1 
HETATM 45 O O3' FDA . . . B 2 -14.25 20.39 -11.946 1 36.44 ? O3' FDA 501 A 1 
HETATM 46 C C4' FDA . . . B 2 -14.69 22.404 -10.712 1 39.68 ? C4' FDA 501 A 1 
HETATM 47 O O4' FDA . . . B 2 -14.199 23.719 -10.448 1 38.87 ? O4' FDA 501 A 1 
HETATM 48 C C5' FDA . . . B 2 -14.792 21.597 -9.438 1 43.32 ? C5' FDA 501 A 1 
HETATM 49 O O5' FDA . . . B 2 -15.206 22.456 -8.356 1 47.42 ? O5' FDA 501 A 1 
HETATM 50 P P FDA . . . B 2 -14.579 22.289 -6.913 1 30.89 ? P FDA 501 A 1 
HETATM 51 O O1P FDA . . . B 2 -15.203 23.294 -6.02 1 36.87 ? O1P FDA 501 A 1 
HETATM 52 O O2P FDA . . . B 2 -14.633 20.846 -6.399 1 25.82 ? O2P FDA 501 A 1 
HETATM 53 O O3P FDA . . . B 2 -13.037 22.644 -7.149 1 25.01 ? O3P FDA 501 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           417 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#