data_4OPT # _model_server_result.job_id LALT7oZdAwXyYnyfyK_jGQ _model_server_result.datetime_utc '2024-11-23 03:59:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4opt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4OPT # _exptl.entry_id 4OPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERANYLGERANYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OPT _cell.length_a 63.652 _cell.length_b 82.198 _cell.length_c 106.363 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 311 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 336 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 335 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H36 O7 P2' _chem_comp.formula_weight 450.443 _chem_comp.id GRG _chem_comp.mon_nstd_flag . _chem_comp.name 'GERANYLGERANYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C18 GRG sing 222 n n C20 H201 GRG sing 223 n n C20 H202 GRG sing 224 n n C20 H203 GRG sing 225 n n C19 C18 GRG sing 226 n n C19 H191 GRG sing 227 n n C19 H192 GRG sing 228 n n C19 H193 GRG sing 229 n n C18 C17 GRG doub 230 n n C17 C16 GRG sing 231 n n C17 H17 GRG sing 232 n n C16 C15 GRG sing 233 n n C16 H161 GRG sing 234 n n C16 H162 GRG sing 235 n n C14 C13 GRG sing 236 n n C14 H141 GRG sing 237 n n C14 H142 GRG sing 238 n n C14 H143 GRG sing 239 n n C13 C15 GRG sing 240 n n C13 C12 GRG doub 241 e n C15 H151 GRG sing 242 n n C15 H152 GRG sing 243 n n C12 C11 GRG sing 244 n n C12 H12 GRG sing 245 n n C11 C9 GRG sing 246 n n C11 H111 GRG sing 247 n n C11 H112 GRG sing 248 n n C9 C8 GRG sing 249 n n C9 HC91 GRG sing 250 n n C9 HC92 GRG sing 251 n n C8 C10 GRG sing 252 n n C8 C7 GRG doub 253 e n C10 H101 GRG sing 254 n n C10 H102 GRG sing 255 n n C10 H103 GRG sing 256 n n C7 C6 GRG sing 257 n n C7 HC7 GRG sing 258 n n C6 C5 GRG sing 259 n n C6 HC61 GRG sing 260 n n C6 HC62 GRG sing 261 n n C5 C3 GRG sing 262 n n C5 HC51 GRG sing 263 n n C5 HC52 GRG sing 264 n n C3 C4 GRG sing 265 n n C3 C2 GRG doub 266 e n C4 HC41 GRG sing 267 n n C4 HC42 GRG sing 268 n n C4 HC43 GRG sing 269 n n C2 C1 GRG sing 270 n n C2 HC2 GRG sing 271 n n C1 O1 GRG sing 272 n n C1 HC11 GRG sing 273 n n C1 HC12 GRG sing 274 n n O1 PA GRG sing 275 n n PA O1A GRG sing 276 n n PA O3A GRG sing 277 n n PA O2A GRG doub 278 n n O1A H1AO GRG sing 279 n n O3A PB GRG sing 280 n n PB O1B GRG sing 281 n n PB O2B GRG sing 282 n n PB O3B GRG doub 283 n n O1B H1BO GRG sing 284 n n O2B H2BO GRG sing 285 n n # _atom_sites.entry_id 4OPT _atom_sites.fract_transf_matrix[1][1] 0.01571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDA A 1 501 454 FDA FDA . C 3 GRG A 1 502 455 GRG GRG . D 4 SO4 A 1 503 456 SO4 SO4 . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 7 HOH HOH . E 5 HOH A 7 607 8 HOH HOH . E 5 HOH A 8 608 9 HOH HOH . E 5 HOH A 9 609 10 HOH HOH . E 5 HOH A 10 610 11 HOH HOH . E 5 HOH A 11 611 12 HOH HOH . E 5 HOH A 12 612 13 HOH HOH . E 5 HOH A 13 613 14 HOH HOH . E 5 HOH A 14 614 15 HOH HOH . E 5 HOH A 15 615 17 HOH HOH . E 5 HOH A 16 616 18 HOH HOH . E 5 HOH A 17 617 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 GRG . . . C 3 -12.467 22.261 -21.169 0.85 49.67 ? C20 GRG 502 A 1 HETATM 2 C C19 GRG . . . C 3 -11.869 20.522 -19.302 0.85 40.18 ? C19 GRG 502 A 1 HETATM 3 C C18 GRG . . . C 3 -12.901 21.239 -20.143 0.85 45.47 ? C18 GRG 502 A 1 HETATM 4 C C17 GRG . . . C 3 -14.212 20.978 -19.978 0.85 41.72 ? C17 GRG 502 A 1 HETATM 5 C C16 GRG . . . C 3 -15.234 21.695 -20.831 0.85 37.1 ? C16 GRG 502 A 1 HETATM 6 C C14 GRG . . . C 3 -17.5 21.285 -22.846 0.85 26.87 ? C14 GRG 502 A 1 HETATM 7 C C13 GRG . . . C 3 -17.626 21.754 -21.414 0.85 33.33 ? C13 GRG 502 A 1 HETATM 8 C C15 GRG . . . C 3 -16.623 21.318 -20.372 0.85 32.7 ? C15 GRG 502 A 1 HETATM 9 C C12 GRG . . . C 3 -18.63 22.568 -21.042 0.85 37.48 ? C12 GRG 502 A 1 HETATM 10 C C11 GRG . . . C 3 -19.661 23.039 -22.039 0.85 37.19 ? C11 GRG 502 A 1 HETATM 11 C C9 GRG . . . C 3 -20.833 23.587 -21.258 0.85 43.32 ? C9 GRG 502 A 1 HETATM 12 C C8 GRG . . . C 3 -21.686 24.458 -22.151 0.85 46.56 ? C8 GRG 502 A 1 HETATM 13 C C10 GRG . . . C 3 -21.57 25.966 -22.083 0.85 45.7 ? C10 GRG 502 A 1 HETATM 14 C C7 GRG . . . C 3 -22.541 23.868 -23.005 0.85 45.89 ? C7 GRG 502 A 1 HETATM 15 C C6 GRG . . . C 3 -23.432 24.675 -23.926 0.85 51.25 ? C6 GRG 502 A 1 HETATM 16 C C5 GRG . . . C 3 -23.724 23.911 -25.204 0.85 55.85 ? C5 GRG 502 A 1 HETATM 17 C C3 GRG . . . C 3 -24.467 22.615 -24.937 0.85 61.48 ? C3 GRG 502 A 1 HETATM 18 C C4 GRG . . . C 3 -24.333 21.468 -25.917 0.85 62.43 ? C4 GRG 502 A 1 HETATM 19 C C2 GRG . . . C 3 -25.246 22.478 -23.844 0.85 65.81 ? C2 GRG 502 A 1 HETATM 20 C C1 GRG . . . C 3 -25.982 21.192 -23.556 0.85 70.17 ? C1 GRG 502 A 1 HETATM 21 O O1 GRG . . . C 3 -26.728 21.374 -22.378 0.85 73.73 ? O1 GRG 502 A 1 HETATM 22 P PA GRG . . . C 3 -28.285 21.56 -22.546 0.85 252.75 ? PA GRG 502 A 1 HETATM 23 O O1A GRG . . . C 3 -29.014 20.674 -21.564 0.85 252.96 ? O1A GRG 502 A 1 HETATM 24 O O3A GRG . . . C 3 -28.664 21.13 -24.019 0.85 95.44 ? O3A GRG 502 A 1 HETATM 25 O O2A GRG . . . C 3 -28.647 23.008 -22.311 0.85 252.67 ? O2A GRG 502 A 1 HETATM 26 P PB GRG . . . C 3 -30.132 21.141 -24.599 0.85 145.52 ? PB GRG 502 A 1 HETATM 27 O O1B GRG . . . C 3 -30.541 19.723 -24.915 0.85 145.2 ? O1B GRG 502 A 1 HETATM 28 O O2B GRG . . . C 3 -31.078 21.722 -23.574 0.85 146.33 ? O2B GRG 502 A 1 HETATM 29 O O3B GRG . . . C 3 -30.174 21.971 -25.859 0.85 145.05 ? O3B GRG 502 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 29 #