data_4OPU
#
_model_server_result.job_id            2jueX_6FfOCzDJ9NtcCmaw 
_model_server_result.datetime_utc      '2024-11-23 04:13:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4opu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4OPU 
#
_exptl.entry_id    4OPU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.566 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OPU 
_cell.length_a            63.921 
_cell.length_b            81.988 
_cell.length_c            106.169 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OPU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             311 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              310 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             336 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              335 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.038 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H35 N9 O15 P2' 
_chem_comp.formula_weight    787.566 
_chem_comp.id                FDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FDA doub 83 n n 
PA O2A FDA sing 84 n n 
PA O5B FDA sing 85 n n 
PA O3P FDA sing 86 n n 
O2A HOA2 FDA sing 87 n n 
O5B C5B FDA sing 88 n n 
C5B C4B FDA sing 89 n n 
C5B H51A FDA sing 90 n n 
C5B H52A FDA sing 91 n n 
C4B O4B FDA sing 92 n n 
C4B C3B FDA sing 93 n n 
C4B H4B FDA sing 94 n n 
O4B C1B FDA sing 95 n n 
C3B O3B FDA sing 96 n n 
C3B C2B FDA sing 97 n n 
C3B H3B FDA sing 98 n n 
O3B HO3A FDA sing 99 n n 
C2B O2B FDA sing 100 n n 
C2B C1B FDA sing 101 n n 
C2B H2B FDA sing 102 n n 
O2B HO2A FDA sing 103 n n 
C1B N9A FDA sing 104 n n 
C1B H1B FDA sing 105 n n 
N9A C8A FDA sing 106 n y 
N9A C4A FDA sing 107 n y 
C8A N7A FDA doub 108 n y 
C8A H8A FDA sing 109 n n 
N7A C5A FDA sing 110 n y 
C5A C6A FDA sing 111 n y 
C5A C4A FDA doub 112 n y 
C6A N6A FDA sing 113 n n 
C6A N1A FDA doub 114 n y 
N6A H61A FDA sing 115 n n 
N6A H62A FDA sing 116 n n 
N1A C2A FDA sing 117 n y 
C2A N3A FDA doub 118 n y 
C2A H2A FDA sing 119 n n 
N3A C4A FDA sing 120 n y 
N1 C2 FDA sing 121 n n 
N1 C10 FDA sing 122 n n 
N1 HN1 FDA sing 123 n n 
C2 O2 FDA doub 124 n n 
C2 N3 FDA sing 125 n n 
N3 C4 FDA sing 126 n n 
N3 HN3 FDA sing 127 n n 
C4 O4 FDA doub 128 n n 
C4 C4X FDA sing 129 n n 
C4X N5 FDA sing 130 n n 
C4X C10 FDA doub 131 n n 
N5 C5X FDA sing 132 n n 
N5 HN5 FDA sing 133 n n 
C5X C6 FDA doub 134 n y 
C5X C9A FDA sing 135 n y 
C6 C7 FDA sing 136 n y 
C6 H6 FDA sing 137 n n 
C7 C7M FDA sing 138 n n 
C7 C8 FDA doub 139 n y 
C7M HM71 FDA sing 140 n n 
C7M HM72 FDA sing 141 n n 
C7M HM73 FDA sing 142 n n 
C8 C8M FDA sing 143 n n 
C8 C9 FDA sing 144 n y 
C8M HM81 FDA sing 145 n n 
C8M HM82 FDA sing 146 n n 
C8M HM83 FDA sing 147 n n 
C9 C9A FDA doub 148 n y 
C9 H9 FDA sing 149 n n 
C9A N10 FDA sing 150 n n 
N10 C10 FDA sing 151 n n 
N10 C1' FDA sing 152 n n 
C1' C2' FDA sing 153 n n 
C1' "H1'1" FDA sing 154 n n 
C1' "H1'2" FDA sing 155 n n 
C2' O2' FDA sing 156 n n 
C2' C3' FDA sing 157 n n 
C2' H2' FDA sing 158 n n 
O2' HO2' FDA sing 159 n n 
C3' O3' FDA sing 160 n n 
C3' C4' FDA sing 161 n n 
C3' H3' FDA sing 162 n n 
O3' HO3' FDA sing 163 n n 
C4' O4' FDA sing 164 n n 
C4' C5' FDA sing 165 n n 
C4' H4' FDA sing 166 n n 
O4' HO4' FDA sing 167 n n 
C5' O5' FDA sing 168 n n 
C5' "H5'1" FDA sing 169 n n 
C5' "H5'2" FDA sing 170 n n 
O5' P FDA sing 171 n n 
P O1P FDA doub 172 n n 
P O2P FDA sing 173 n n 
P O3P FDA sing 174 n n 
O2P HOP2 FDA sing 175 n n 
#
_atom_sites.entry_id                     4OPU 
_atom_sites.fract_transf_matrix[1][1]    0.015644 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FDA A 1 501 454 FDA FDA . 
C 3 GRG A 1 502 455 GRG GRG . 
D 3 GRG A 1 503 456 GRG GRG . 
E 4 HOH A 1 601 1 HOH HOH . 
E 4 HOH A 2 602 4 HOH HOH . 
E 4 HOH A 3 603 5 HOH HOH . 
E 4 HOH A 4 604 7 HOH HOH . 
E 4 HOH A 5 605 8 HOH HOH . 
E 4 HOH A 6 606 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FDA . . . B 2 12.113 23.906 6.446 1 50.18 ? PA FDA 501 A 1 
HETATM 2 O O1A FDA . . . B 2 10.685 23.611 6.726 1 57.74 ? O1A FDA 501 A 1 
HETATM 3 O O2A FDA . . . B 2 12.606 25.236 7.029 1 42.09 ? O2A FDA 501 A 1 
HETATM 4 O O5B FDA . . . B 2 12.352 23.782 4.889 1 61.94 ? O5B FDA 501 A 1 
HETATM 5 C C5B FDA . . . B 2 11.251 23.87 3.963 1 58.27 ? C5B FDA 501 A 1 
HETATM 6 C C4B FDA . . . B 2 11.435 25.086 3.094 1 57.2 ? C4B FDA 501 A 1 
HETATM 7 O O4B FDA . . . B 2 11.247 24.719 1.709 1 60.73 ? O4B FDA 501 A 1 
HETATM 8 C C3B FDA . . . B 2 10.452 26.223 3.352 1 55.18 ? C3B FDA 501 A 1 
HETATM 9 O O3B FDA . . . B 2 11.075 27.472 3.077 1 51.92 ? O3B FDA 501 A 1 
HETATM 10 C C2B FDA . . . B 2 9.322 25.907 2.372 1 57.14 ? C2B FDA 501 A 1 
HETATM 11 O O2B FDA . . . B 2 8.577 27.069 2.027 1 58.6 ? O2B FDA 501 A 1 
HETATM 12 C C1B FDA . . . B 2 10.12 25.391 1.175 1 57.96 ? C1B FDA 501 A 1 
HETATM 13 N N9A FDA . . . B 2 9.401 24.458 0.31 1 56.88 ? N9A FDA 501 A 1 
HETATM 14 C C8A FDA . . . B 2 8.775 23.297 0.683 1 56.01 ? C8A FDA 501 A 1 
HETATM 15 N N7A FDA . . . B 2 8.215 22.651 -0.311 1 55.61 ? N7A FDA 501 A 1 
HETATM 16 C C5A FDA . . . B 2 8.491 23.442 -1.417 1 56.79 ? C5A FDA 501 A 1 
HETATM 17 C C6A FDA . . . B 2 8.176 23.307 -2.783 1 53.42 ? C6A FDA 501 A 1 
HETATM 18 N N6A FDA . . . B 2 7.491 22.28 -3.29 1 49.92 ? N6A FDA 501 A 1 
HETATM 19 N N1A FDA . . . B 2 8.608 24.275 -3.624 1 53.37 ? N1A FDA 501 A 1 
HETATM 20 C C2A FDA . . . B 2 9.301 25.302 -3.124 1 55.15 ? C2A FDA 501 A 1 
HETATM 21 N N3A FDA . . . B 2 9.661 25.532 -1.859 1 57.35 ? N3A FDA 501 A 1 
HETATM 22 C C4A FDA . . . B 2 9.224 24.558 -1.048 1 58.43 ? C4A FDA 501 A 1 
HETATM 23 N N1 FDA . . . B 2 15.483 22.735 15.47 1 68.07 ? N1 FDA 501 A 1 
HETATM 24 C C2 FDA . . . B 2 16.585 22.973 16.248 1 69.06 ? C2 FDA 501 A 1 
HETATM 25 O O2 FDA . . . B 2 17.686 22.501 15.978 1 71.45 ? O2 FDA 501 A 1 
HETATM 26 N N3 FDA . . . B 2 16.385 23.774 17.341 1 69.37 ? N3 FDA 501 A 1 
HETATM 27 C C4 FDA . . . B 2 15.17 24.195 17.847 1 70.31 ? C4 FDA 501 A 1 
HETATM 28 O O4 FDA . . . B 2 15.129 25.024 18.753 1 72.82 ? O4 FDA 501 A 1 
HETATM 29 C C4X FDA . . . B 2 14.065 23.576 17.199 1 68.02 ? C4X FDA 501 A 1 
HETATM 30 N N5 FDA . . . B 2 12.809 23.693 17.73 1 66.42 ? N5 FDA 501 A 1 
HETATM 31 C C5X FDA . . . B 2 11.692 23.322 16.992 1 68.27 ? C5X FDA 501 A 1 
HETATM 32 C C6 FDA . . . B 2 10.404 23.658 17.399 1 70.11 ? C6 FDA 501 A 1 
HETATM 33 C C7 FDA . . . B 2 9.286 23.294 16.655 1 73.51 ? C7 FDA 501 A 1 
HETATM 34 C C7M FDA . . . B 2 7.915 23.69 17.135 1 74.75 ? C7M FDA 501 A 1 
HETATM 35 C C8 FDA . . . B 2 9.457 22.568 15.466 1 71.88 ? C8 FDA 501 A 1 
HETATM 36 C C8M FDA . . . B 2 8.274 22.16 14.628 1 71.92 ? C8M FDA 501 A 1 
HETATM 37 C C9 FDA . . . B 2 10.739 22.232 15.051 1 70.64 ? C9 FDA 501 A 1 
HETATM 38 C C9A FDA . . . B 2 11.852 22.603 15.797 1 69.22 ? C9A FDA 501 A 1 
HETATM 39 N N10 FDA . . . B 2 13.161 22.281 15.391 1 67.42 ? N10 FDA 501 A 1 
HETATM 40 C C10 FDA . . . B 2 14.235 22.866 16.023 1 67.88 ? C10 FDA 501 A 1 
HETATM 41 C C1' FDA . . . B 2 13.402 21.535 14.139 1 65.83 ? C1' FDA 501 A 1 
HETATM 42 C C2' FDA . . . B 2 13.728 22.487 12.992 1 62.52 ? C2' FDA 501 A 1 
HETATM 43 O O2' FDA . . . B 2 12.726 23.5 12.907 1 62.7 ? O2' FDA 501 A 1 
HETATM 44 C C3' FDA . . . B 2 13.804 21.711 11.676 1 60.75 ? C3' FDA 501 A 1 
HETATM 45 O O3' FDA . . . B 2 14.321 20.411 11.936 1 57.66 ? O3' FDA 501 A 1 
HETATM 46 C C4' FDA . . . B 2 14.68 22.399 10.627 1 61 ? C4' FDA 501 A 1 
HETATM 47 O O4' FDA . . . B 2 14.174 23.709 10.367 1 57.21 ? O4' FDA 501 A 1 
HETATM 48 C C5' FDA . . . B 2 14.79 21.603 9.346 1 64.27 ? C5' FDA 501 A 1 
HETATM 49 O O5' FDA . . . B 2 15.189 22.486 8.278 1 65.29 ? O5' FDA 501 A 1 
HETATM 50 P P FDA . . . B 2 14.549 22.371 6.834 1 45.15 ? P FDA 501 A 1 
HETATM 51 O O1P FDA . . . B 2 15.192 23.394 5.983 1 48.6 ? O1P FDA 501 A 1 
HETATM 52 O O2P FDA . . . B 2 14.565 20.937 6.302 1 39.4 ? O2P FDA 501 A 1 
HETATM 53 O O3P FDA . . . B 2 13.025 22.763 7.079 1 42.23 ? O3P FDA 501 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#