data_4OPU # _model_server_result.job_id Nd3OTh_AGW0jMcc-jgZ3Rw _model_server_result.datetime_utc '2024-11-23 04:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4opu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4OPU # _exptl.entry_id 4OPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERANYLGERANYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OPU _cell.length_a 63.921 _cell.length_b 81.988 _cell.length_c 106.169 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 311 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 336 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 335 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H36 O7 P2' _chem_comp.formula_weight 450.443 _chem_comp.id GRG _chem_comp.mon_nstd_flag . _chem_comp.name 'GERANYLGERANYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C18 GRG sing 222 n n C20 H201 GRG sing 223 n n C20 H202 GRG sing 224 n n C20 H203 GRG sing 225 n n C19 C18 GRG sing 226 n n C19 H191 GRG sing 227 n n C19 H192 GRG sing 228 n n C19 H193 GRG sing 229 n n C18 C17 GRG doub 230 n n C17 C16 GRG sing 231 n n C17 H17 GRG sing 232 n n C16 C15 GRG sing 233 n n C16 H161 GRG sing 234 n n C16 H162 GRG sing 235 n n C14 C13 GRG sing 236 n n C14 H141 GRG sing 237 n n C14 H142 GRG sing 238 n n C14 H143 GRG sing 239 n n C13 C15 GRG sing 240 n n C13 C12 GRG doub 241 e n C15 H151 GRG sing 242 n n C15 H152 GRG sing 243 n n C12 C11 GRG sing 244 n n C12 H12 GRG sing 245 n n C11 C9 GRG sing 246 n n C11 H111 GRG sing 247 n n C11 H112 GRG sing 248 n n C9 C8 GRG sing 249 n n C9 HC91 GRG sing 250 n n C9 HC92 GRG sing 251 n n C8 C10 GRG sing 252 n n C8 C7 GRG doub 253 e n C10 H101 GRG sing 254 n n C10 H102 GRG sing 255 n n C10 H103 GRG sing 256 n n C7 C6 GRG sing 257 n n C7 HC7 GRG sing 258 n n C6 C5 GRG sing 259 n n C6 HC61 GRG sing 260 n n C6 HC62 GRG sing 261 n n C5 C3 GRG sing 262 n n C5 HC51 GRG sing 263 n n C5 HC52 GRG sing 264 n n C3 C4 GRG sing 265 n n C3 C2 GRG doub 266 e n C4 HC41 GRG sing 267 n n C4 HC42 GRG sing 268 n n C4 HC43 GRG sing 269 n n C2 C1 GRG sing 270 n n C2 HC2 GRG sing 271 n n C1 O1 GRG sing 272 n n C1 HC11 GRG sing 273 n n C1 HC12 GRG sing 274 n n O1 PA GRG sing 275 n n PA O1A GRG sing 276 n n PA O3A GRG sing 277 n n PA O2A GRG doub 278 n n O1A H1AO GRG sing 279 n n O3A PB GRG sing 280 n n PB O1B GRG sing 281 n n PB O2B GRG sing 282 n n PB O3B GRG doub 283 n n O1B H1BO GRG sing 284 n n O2B H2BO GRG sing 285 n n # _atom_sites.entry_id 4OPU _atom_sites.fract_transf_matrix[1][1] 0.015644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDA A 1 501 454 FDA FDA . C 3 GRG A 1 502 455 GRG GRG . D 3 GRG A 1 503 456 GRG GRG . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 4 HOH HOH . E 4 HOH A 3 603 5 HOH HOH . E 4 HOH A 4 604 7 HOH HOH . E 4 HOH A 5 605 8 HOH HOH . E 4 HOH A 6 606 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 GRG . . . C 3 11.966 12.292 23.118 0.8 61.67 ? C20 GRG 502 A 1 HETATM 2 C C19 GRG . . . C 3 10.551 12.585 20.938 0.8 59.08 ? C19 GRG 502 A 1 HETATM 3 C C18 GRG . . . C 3 11.382 13.187 22.047 0.8 60.58 ? C18 GRG 502 A 1 HETATM 4 C C17 GRG . . . C 3 11.598 14.517 22.077 0.8 58.49 ? C17 GRG 502 A 1 HETATM 5 C C16 GRG . . . C 3 11.006 15.413 21.009 0.8 56.12 ? C16 GRG 502 A 1 HETATM 6 C C14 GRG . . . C 3 9.051 18.225 20.156 0.8 60.12 ? C14 GRG 502 A 1 HETATM 7 C C13 GRG . . . C 3 10.407 17.786 20.664 0.8 60.1 ? C13 GRG 502 A 1 HETATM 8 C C15 GRG . . . C 3 10.5 16.672 21.681 0.8 58.4 ? C15 GRG 502 A 1 HETATM 9 C C12 GRG . . . C 3 11.546 18.366 20.221 0.8 66.66 ? C12 GRG 502 A 1 HETATM 10 C C11 GRG . . . C 3 11.575 19.486 19.201 0.8 75.52 ? C11 GRG 502 A 1 HETATM 11 C C9 GRG . . . C 3 11.304 20.813 19.877 0.8 84.34 ? C9 GRG 502 A 1 HETATM 12 C C8 GRG . . . C 3 12.592 21.505 20.275 0.8 95.42 ? C8 GRG 502 A 1 HETATM 13 C C10 GRG . . . C 3 12.523 22.642 21.265 0.8 96.82 ? C10 GRG 502 A 1 HETATM 14 C C7 GRG . . . C 3 13.787 21.129 19.758 0.8 106.5 ? C7 GRG 502 A 1 HETATM 15 C C6 GRG . . . C 3 15.083 21.818 20.146 0.8 119 ? C6 GRG 502 A 1 HETATM 16 C C5 GRG . . . C 3 15.63 21.195 21.413 0.8 134.14 ? C5 GRG 502 A 1 HETATM 17 C C3 GRG . . . C 3 17.129 21.386 21.483 0.8 148.94 ? C3 GRG 502 A 1 HETATM 18 C C4 GRG . . . C 3 17.855 20.912 22.712 0.8 150.54 ? C4 GRG 502 A 1 HETATM 19 C C2 GRG . . . C 3 17.813 21.968 20.47 0.8 164.07 ? C2 GRG 502 A 1 HETATM 20 C C1 GRG . . . C 3 19.317 22.176 20.498 0.8 175.85 ? C1 GRG 502 A 1 HETATM 21 O O1 GRG . . . C 3 19.682 23.042 21.545 0.8 179.58 ? O1 GRG 502 A 1 HETATM 22 P PA GRG . . . C 3 21.219 23.121 21.887 0.4 217.36 ? PA GRG 502 A 1 HETATM 23 O O1A GRG . . . C 3 21.983 22.527 20.73 0.4 217.57 ? O1A GRG 502 A 1 HETATM 24 O O3A GRG . . . C 3 21.53 22.277 23.183 0.4 196.65 ? O3A GRG 502 A 1 HETATM 25 O O2A GRG . . . C 3 21.632 24.553 22.097 0.4 217.79 ? O2A GRG 502 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 25 #