data_4OQE
#
_model_server_result.job_id            6A8s369trX74xCe_TaW5mA 
_model_server_result.datetime_utc      '2024-10-11 19:20:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oqe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":300}' 
#
_entry.id    4OQE 
#
_exptl.entry_id    4OQE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.29 
_cell.angle_gamma         90 
_cell.entry_id            4OQE 
_cell.length_a            39.885 
_cell.length_b            92.938 
_cell.length_c            77.879 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OQE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 344 n n 
N HN1 SAH sing 345 n n 
N HN2 SAH sing 346 n n 
CA CB SAH sing 347 n n 
CA C SAH sing 348 n n 
CA HA SAH sing 349 n n 
CB CG SAH sing 350 n n 
CB HB1 SAH sing 351 n n 
CB HB2 SAH sing 352 n n 
CG SD SAH sing 353 n n 
CG HG1 SAH sing 354 n n 
CG HG2 SAH sing 355 n n 
SD C5' SAH sing 356 n n 
C O SAH doub 357 n n 
C OXT SAH sing 358 n n 
OXT HXT SAH sing 359 n n 
C5' C4' SAH sing 360 n n 
C5' "H5'1" SAH sing 361 n n 
C5' "H5'2" SAH sing 362 n n 
C4' O4' SAH sing 363 n n 
C4' C3' SAH sing 364 n n 
C4' H4' SAH sing 365 n n 
O4' C1' SAH sing 366 n n 
C3' O3' SAH sing 367 n n 
C3' C2' SAH sing 368 n n 
C3' H3' SAH sing 369 n n 
O3' HO3' SAH sing 370 n n 
C2' O2' SAH sing 371 n n 
C2' C1' SAH sing 372 n n 
C2' H2' SAH sing 373 n n 
O2' HO2' SAH sing 374 n n 
C1' N9 SAH sing 375 n n 
C1' H1' SAH sing 376 n n 
N9 C8 SAH sing 377 n y 
N9 C4 SAH sing 378 n y 
C8 N7 SAH doub 379 n y 
C8 H8 SAH sing 380 n n 
N7 C5 SAH sing 381 n y 
C5 C6 SAH sing 382 n y 
C5 C4 SAH doub 383 n y 
C6 N6 SAH sing 384 n n 
C6 N1 SAH doub 385 n y 
N6 HN61 SAH sing 386 n n 
N6 HN62 SAH sing 387 n n 
N1 C2 SAH sing 388 n y 
C2 N3 SAH doub 389 n y 
C2 H2 SAH sing 390 n n 
N3 C4 SAH sing 391 n y 
#
_atom_sites.entry_id                     4OQE 
_atom_sites.fract_transf_matrix[1][1]    0.025072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003207 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 300 300 SAH SAH . 
D 3 MMF A 1 301 301 MMF MMF . 
E 2 SAH B 1 300 300 SAH SAH . 
F 3 MMF B 1 301 301 MMF MMF . 
G 4 HOH A 1 401 1 HOH HOH . 
G 4 HOH A 2 402 7 HOH HOH . 
G 4 HOH A 3 403 9 HOH HOH . 
G 4 HOH A 4 404 13 HOH HOH . 
G 4 HOH A 5 405 16 HOH HOH . 
G 4 HOH A 6 406 19 HOH HOH . 
G 4 HOH A 7 407 23 HOH HOH . 
G 4 HOH A 8 408 25 HOH HOH . 
G 4 HOH A 9 409 27 HOH HOH . 
G 4 HOH A 10 410 28 HOH HOH . 
G 4 HOH A 11 411 29 HOH HOH . 
G 4 HOH A 12 412 30 HOH HOH . 
G 4 HOH A 13 413 33 HOH HOH . 
G 4 HOH A 14 414 36 HOH HOH . 
G 4 HOH A 15 415 40 HOH HOH . 
G 4 HOH A 16 416 46 HOH HOH . 
G 4 HOH A 17 417 47 HOH HOH . 
G 4 HOH A 18 418 49 HOH HOH . 
G 4 HOH A 19 419 50 HOH HOH . 
G 4 HOH A 20 420 51 HOH HOH . 
G 4 HOH A 21 421 52 HOH HOH . 
G 4 HOH A 22 422 53 HOH HOH . 
G 4 HOH A 23 423 54 HOH HOH . 
G 4 HOH A 24 424 55 HOH HOH . 
G 4 HOH A 25 425 57 HOH HOH . 
G 4 HOH A 26 426 61 HOH HOH . 
G 4 HOH A 27 427 64 HOH HOH . 
G 4 HOH A 28 428 65 HOH HOH . 
G 4 HOH A 29 429 77 HOH HOH . 
G 4 HOH A 30 430 78 HOH HOH . 
G 4 HOH A 31 431 82 HOH HOH . 
G 4 HOH A 32 432 85 HOH HOH . 
G 4 HOH A 33 433 86 HOH HOH . 
G 4 HOH A 34 434 87 HOH HOH . 
G 4 HOH A 35 435 88 HOH HOH . 
G 4 HOH A 36 436 89 HOH HOH . 
G 4 HOH A 37 437 90 HOH HOH . 
G 4 HOH A 38 438 91 HOH HOH . 
G 4 HOH A 39 439 92 HOH HOH . 
G 4 HOH A 40 440 93 HOH HOH . 
G 4 HOH A 41 441 94 HOH HOH . 
G 4 HOH A 42 442 95 HOH HOH . 
G 4 HOH A 43 443 96 HOH HOH . 
G 4 HOH A 44 444 97 HOH HOH . 
G 4 HOH A 45 445 98 HOH HOH . 
G 4 HOH A 46 446 99 HOH HOH . 
G 4 HOH A 47 447 101 HOH HOH . 
G 4 HOH A 48 448 102 HOH HOH . 
G 4 HOH A 49 449 105 HOH HOH . 
G 4 HOH A 50 450 107 HOH HOH . 
G 4 HOH A 51 451 108 HOH HOH . 
G 4 HOH A 52 452 109 HOH HOH . 
G 4 HOH A 53 453 110 HOH HOH . 
G 4 HOH A 54 454 111 HOH HOH . 
G 4 HOH A 55 455 112 HOH HOH . 
G 4 HOH A 56 456 113 HOH HOH . 
G 4 HOH A 57 457 114 HOH HOH . 
G 4 HOH A 58 458 115 HOH HOH . 
G 4 HOH A 59 459 116 HOH HOH . 
G 4 HOH A 60 460 117 HOH HOH . 
G 4 HOH A 61 461 118 HOH HOH . 
G 4 HOH A 62 462 120 HOH HOH . 
G 4 HOH A 63 463 121 HOH HOH . 
G 4 HOH A 64 464 123 HOH HOH . 
G 4 HOH A 65 465 124 HOH HOH . 
G 4 HOH A 66 466 127 HOH HOH . 
G 4 HOH A 67 467 131 HOH HOH . 
G 4 HOH A 68 468 134 HOH HOH . 
G 4 HOH A 69 469 135 HOH HOH . 
G 4 HOH A 70 470 136 HOH HOH . 
G 4 HOH A 71 471 137 HOH HOH . 
G 4 HOH A 72 472 138 HOH HOH . 
G 4 HOH A 73 473 139 HOH HOH . 
G 4 HOH A 74 474 140 HOH HOH . 
G 4 HOH A 75 475 141 HOH HOH . 
G 4 HOH A 76 476 142 HOH HOH . 
G 4 HOH A 77 477 170 HOH HOH . 
G 4 HOH A 78 478 171 HOH HOH . 
G 4 HOH A 79 479 172 HOH HOH . 
G 4 HOH A 80 480 173 HOH HOH . 
G 4 HOH A 81 481 175 HOH HOH . 
G 4 HOH A 82 482 176 HOH HOH . 
G 4 HOH A 83 483 177 HOH HOH . 
G 4 HOH A 84 484 178 HOH HOH . 
G 4 HOH A 85 485 179 HOH HOH . 
G 4 HOH A 86 486 180 HOH HOH . 
G 4 HOH A 87 487 181 HOH HOH . 
G 4 HOH A 88 488 182 HOH HOH . 
G 4 HOH A 89 489 183 HOH HOH . 
G 4 HOH A 90 490 184 HOH HOH . 
G 4 HOH A 91 491 185 HOH HOH . 
G 4 HOH A 92 492 186 HOH HOH . 
G 4 HOH A 93 493 187 HOH HOH . 
G 4 HOH A 94 494 188 HOH HOH . 
G 4 HOH A 95 495 189 HOH HOH . 
G 4 HOH A 96 496 190 HOH HOH . 
G 4 HOH A 97 497 191 HOH HOH . 
G 4 HOH A 98 498 192 HOH HOH . 
G 4 HOH A 99 499 193 HOH HOH . 
G 4 HOH A 100 500 194 HOH HOH . 
G 4 HOH A 101 501 215 HOH HOH . 
G 4 HOH A 102 502 216 HOH HOH . 
G 4 HOH A 103 503 217 HOH HOH . 
G 4 HOH A 104 504 218 HOH HOH . 
G 4 HOH A 105 505 219 HOH HOH . 
G 4 HOH A 106 506 220 HOH HOH . 
G 4 HOH A 107 507 221 HOH HOH . 
G 4 HOH A 108 508 222 HOH HOH . 
G 4 HOH A 109 509 223 HOH HOH . 
G 4 HOH A 110 510 242 HOH HOH . 
G 4 HOH A 111 511 243 HOH HOH . 
G 4 HOH A 112 512 244 HOH HOH . 
H 4 HOH B 1 401 2 HOH HOH . 
H 4 HOH B 2 402 3 HOH HOH . 
H 4 HOH B 3 403 10 HOH HOH . 
H 4 HOH B 4 404 11 HOH HOH . 
H 4 HOH B 5 405 12 HOH HOH . 
H 4 HOH B 6 406 14 HOH HOH . 
H 4 HOH B 7 407 15 HOH HOH . 
H 4 HOH B 8 408 17 HOH HOH . 
H 4 HOH B 9 409 18 HOH HOH . 
H 4 HOH B 10 410 20 HOH HOH . 
H 4 HOH B 11 411 21 HOH HOH . 
H 4 HOH B 12 412 22 HOH HOH . 
H 4 HOH B 13 413 24 HOH HOH . 
H 4 HOH B 14 414 26 HOH HOH . 
H 4 HOH B 15 415 32 HOH HOH . 
H 4 HOH B 16 416 34 HOH HOH . 
H 4 HOH B 17 417 38 HOH HOH . 
H 4 HOH B 18 418 42 HOH HOH . 
H 4 HOH B 19 419 43 HOH HOH . 
H 4 HOH B 20 420 56 HOH HOH . 
H 4 HOH B 21 421 58 HOH HOH . 
H 4 HOH B 22 422 62 HOH HOH . 
H 4 HOH B 23 423 66 HOH HOH . 
H 4 HOH B 24 424 67 HOH HOH . 
H 4 HOH B 25 425 69 HOH HOH . 
H 4 HOH B 26 426 72 HOH HOH . 
H 4 HOH B 27 427 73 HOH HOH . 
H 4 HOH B 28 428 76 HOH HOH . 
H 4 HOH B 29 429 79 HOH HOH . 
H 4 HOH B 30 430 81 HOH HOH . 
H 4 HOH B 31 431 83 HOH HOH . 
H 4 HOH B 32 432 122 HOH HOH . 
H 4 HOH B 33 433 128 HOH HOH . 
H 4 HOH B 34 434 129 HOH HOH . 
H 4 HOH B 35 435 132 HOH HOH . 
H 4 HOH B 36 436 133 HOH HOH . 
H 4 HOH B 37 437 143 HOH HOH . 
H 4 HOH B 38 438 144 HOH HOH . 
H 4 HOH B 39 439 145 HOH HOH . 
H 4 HOH B 40 440 146 HOH HOH . 
H 4 HOH B 41 441 147 HOH HOH . 
H 4 HOH B 42 442 148 HOH HOH . 
H 4 HOH B 43 443 149 HOH HOH . 
H 4 HOH B 44 444 150 HOH HOH . 
H 4 HOH B 45 445 151 HOH HOH . 
H 4 HOH B 46 446 152 HOH HOH . 
H 4 HOH B 47 447 153 HOH HOH . 
H 4 HOH B 48 448 154 HOH HOH . 
H 4 HOH B 49 449 155 HOH HOH . 
H 4 HOH B 50 450 156 HOH HOH . 
H 4 HOH B 51 451 157 HOH HOH . 
H 4 HOH B 52 452 158 HOH HOH . 
H 4 HOH B 53 453 159 HOH HOH . 
H 4 HOH B 54 454 160 HOH HOH . 
H 4 HOH B 55 455 161 HOH HOH . 
H 4 HOH B 56 456 162 HOH HOH . 
H 4 HOH B 57 457 163 HOH HOH . 
H 4 HOH B 58 458 164 HOH HOH . 
H 4 HOH B 59 459 165 HOH HOH . 
H 4 HOH B 60 460 166 HOH HOH . 
H 4 HOH B 61 461 167 HOH HOH . 
H 4 HOH B 62 462 168 HOH HOH . 
H 4 HOH B 63 463 169 HOH HOH . 
H 4 HOH B 64 464 196 HOH HOH . 
H 4 HOH B 65 465 197 HOH HOH . 
H 4 HOH B 66 466 198 HOH HOH . 
H 4 HOH B 67 467 199 HOH HOH . 
H 4 HOH B 68 468 200 HOH HOH . 
H 4 HOH B 69 469 201 HOH HOH . 
H 4 HOH B 70 470 202 HOH HOH . 
H 4 HOH B 71 471 203 HOH HOH . 
H 4 HOH B 72 472 204 HOH HOH . 
H 4 HOH B 73 473 205 HOH HOH . 
H 4 HOH B 74 474 206 HOH HOH . 
H 4 HOH B 75 475 207 HOH HOH . 
H 4 HOH B 76 476 208 HOH HOH . 
H 4 HOH B 77 477 209 HOH HOH . 
H 4 HOH B 78 478 210 HOH HOH . 
H 4 HOH B 79 479 211 HOH HOH . 
H 4 HOH B 80 480 212 HOH HOH . 
H 4 HOH B 81 481 213 HOH HOH . 
H 4 HOH B 82 482 214 HOH HOH . 
H 4 HOH B 83 483 224 HOH HOH . 
H 4 HOH B 84 484 225 HOH HOH . 
H 4 HOH B 85 485 226 HOH HOH . 
H 4 HOH B 86 486 227 HOH HOH . 
H 4 HOH B 87 487 228 HOH HOH . 
H 4 HOH B 88 488 229 HOH HOH . 
H 4 HOH B 89 489 230 HOH HOH . 
H 4 HOH B 90 490 231 HOH HOH . 
H 4 HOH B 91 491 232 HOH HOH . 
H 4 HOH B 92 492 233 HOH HOH . 
H 4 HOH B 93 493 234 HOH HOH . 
H 4 HOH B 94 494 235 HOH HOH . 
H 4 HOH B 95 495 236 HOH HOH . 
H 4 HOH B 96 496 237 HOH HOH . 
H 4 HOH B 97 497 238 HOH HOH . 
H 4 HOH B 98 498 239 HOH HOH . 
H 4 HOH B 99 499 240 HOH HOH . 
H 4 HOH B 100 500 241 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . E 2 -0.736 -20.794 33.278 1 23.42 ? N SAH 300 B 1 
HETATM 2 C CA SAH . . . E 2 -0.616 -19.333 33.098 1 22.25 ? CA SAH 300 B 1 
HETATM 3 C CB SAH . . . E 2 0.791 -18.854 32.816 1 25.31 ? CB SAH 300 B 1 
HETATM 4 C CG SAH . . . E 2 1.457 -19.344 31.546 1 26.81 ? CG SAH 300 B 1 
HETATM 5 S SD SAH . . . E 2 3.218 -18.957 31.548 1 28.01 ? SD SAH 300 B 1 
HETATM 6 C C SAH . . . E 2 -1.559 -18.923 31.988 1 21.24 ? C SAH 300 B 1 
HETATM 7 O O SAH . . . E 2 -2.313 -19.782 31.565 1 19.84 ? O SAH 300 B 1 
HETATM 8 O OXT SAH . . . E 2 -1.632 -17.78 31.552 1 18.01 ? OXT SAH 300 B 1 
HETATM 9 C C5' SAH . . . E 2 3.778 -20.527 31.981 1 28.09 ? C5' SAH 300 B 1 
HETATM 10 C C4' SAH . . . E 2 4.045 -20.604 33.483 1 29.41 ? C4' SAH 300 B 1 
HETATM 11 O O4' SAH . . . E 2 4.686 -21.863 33.72 1 28.65 ? O4' SAH 300 B 1 
HETATM 12 C C3' SAH . . . E 2 4.962 -19.541 34.076 1 28.82 ? C3' SAH 300 B 1 
HETATM 13 O O3' SAH . . . E 2 4.31 -18.903 35.168 1 27.2 ? O3' SAH 300 B 1 
HETATM 14 C C2' SAH . . . E 2 6.155 -20.319 34.617 1 33.59 ? C2' SAH 300 B 1 
HETATM 15 O O2' SAH . . . E 2 6.8 -19.739 35.787 1 33.74 ? O2' SAH 300 B 1 
HETATM 16 C C1' SAH . . . E 2 5.459 -21.636 34.897 1 31.78 ? C1' SAH 300 B 1 
HETATM 17 N N9 SAH . . . E 2 6.38 -22.756 35.061 1 32.7 ? N9 SAH 300 B 1 
HETATM 18 C C8 SAH . . . E 2 7.452 -23.005 34.273 1 31.78 ? C8 SAH 300 B 1 
HETATM 19 N N7 SAH . . . E 2 8.058 -24.115 34.674 1 31.94 ? N7 SAH 300 B 1 
HETATM 20 C C5 SAH . . . E 2 7.377 -24.566 35.733 1 31.68 ? C5 SAH 300 B 1 
HETATM 21 C C6 SAH . . . E 2 7.514 -25.705 36.617 1 32.82 ? C6 SAH 300 B 1 
HETATM 22 N N6 SAH . . . E 2 8.566 -26.544 36.389 1 34.35 ? N6 SAH 300 B 1 
HETATM 23 N N1 SAH . . . E 2 6.587 -25.849 37.61 1 33.19 ? N1 SAH 300 B 1 
HETATM 24 C C2 SAH . . . E 2 5.579 -24.985 37.809 1 31.58 ? C2 SAH 300 B 1 
HETATM 25 N N3 SAH . . . E 2 5.411 -23.899 37.015 1 31.86 ? N3 SAH 300 B 1 
HETATM 26 C C4 SAH . . . E 2 6.246 -23.681 35.98 1 32.07 ? C4 SAH 300 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#