data_4OQG
#
_model_server_result.job_id            0RpHccTH_fp_67yFqLwgqw 
_model_server_result.datetime_utc      '2024-11-02 10:38:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oqg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    4OQG 
#
_exptl.entry_id    4OQG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              342.154 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[(2R)-2-{[(2R)-2-amino-2-phenylacetyl]amino}-2-(dihydroxyboranyl)ethyl]benzoic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OQG 
_cell.length_a            81.69 
_cell.length_b            81.69 
_cell.length_c            497.92 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OQG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,M 1 1 
B,H,I,N 2 1 
C,J,O 3 1 
D,K,P 4 1 
E,Q 5 1 
F,L,R 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 77 1_555 A SG CYS 98 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 B SG CYS 52 B CYS 77 1_555 B SG CYS 98 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 C SG CYS 52 C CYS 77 1_555 C SG CYS 98 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf4 D SG CYS 52 D CYS 77 1_555 D SG CYS 98 D CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 E SG CYS 52 E CYS 77 1_555 E SG CYS 98 E CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 F SG CYS 52 F CYS 77 1_555 F SG CYS 98 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 A OG SER 45 A SER 70 1_555 G B 2UL . A 2UL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.669 ? 
covale ? covale2 B OG SER 45 B SER 70 1_555 H B 2UL . B 2UL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? 
covale ? covale3 C OG SER 45 C SER 70 1_555 J B 2UL . C 2UL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
covale ? covale4 D OG SER 45 D SER 70 1_555 K B 2UL . D 2UL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
covale ? covale5 F OG SER 45 F SER 70 1_555 L B 2UL . F 2UL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
#
_chem_comp.formula           'C17 H19 B N2 O5' 
_chem_comp.formula_weight    342.154 
_chem_comp.id                2UL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[(2R)-2-{[(2R)-2-amino-2-phenylacetyl]amino}-2-(dihydroxyboranyl)ethyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C4 2UL doub 1 n y 
C3 C2 2UL sing 2 n y 
C4 C5 2UL sing 3 n y 
C5 C6 2UL doub 4 n y 
C6 C7 2UL sing 5 n y 
C7 C2 2UL doub 6 n y 
C2 C1 2UL sing 7 n n 
C1 N2 2UL sing 8 n n 
C1 C8 2UL sing 9 n n 
C8 O5 2UL doub 10 n n 
C8 N1 2UL sing 11 n n 
N1 C11 2UL sing 12 n n 
C11 C9 2UL sing 13 n n 
B O4 2UL sing 14 n n 
B O3 2UL sing 15 n n 
C9 C16 2UL sing 16 n n 
C16 C17 2UL doub 17 n y 
C16 C21 2UL sing 18 n y 
C17 C18 2UL sing 19 n y 
C21 C20 2UL doub 20 n y 
C20 C19 2UL sing 21 n y 
C19 C18 2UL doub 22 n y 
C18 C22 2UL sing 23 n n 
C22 O2 2UL doub 24 n n 
C22 O1 2UL sing 25 n n 
C11 B 2UL sing 26 n n 
C3 H1 2UL sing 27 n n 
C4 H2 2UL sing 28 n n 
C5 H3 2UL sing 29 n n 
C6 H4 2UL sing 30 n n 
C7 H5 2UL sing 31 n n 
C1 H6 2UL sing 32 n n 
N2 H7 2UL sing 33 n n 
N2 H8 2UL sing 34 n n 
N1 H10 2UL sing 35 n n 
C11 H11 2UL sing 36 n n 
O4 H12 2UL sing 37 n n 
O3 H13 2UL sing 38 n n 
C9 H14 2UL sing 39 n n 
C9 H15 2UL sing 40 n n 
C17 H16 2UL sing 41 n n 
C21 H17 2UL sing 42 n n 
C20 H18 2UL sing 43 n n 
C19 H19 2UL sing 44 n n 
O1 H20 2UL sing 45 n n 
#
_atom_sites.entry_id                     4OQG 
_atom_sites.fract_transf_matrix[1][1]    0.012241 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012241 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 2UL A 1 301 1 2UL BOR . 
H 2 2UL B 1 301 1 2UL BOR . 
I 3 ZN B 1 302 1 ZN ZN . 
J 2 2UL C 1 301 1 2UL BOR . 
K 2 2UL D 1 301 1 2UL BOR . 
L 2 2UL F 1 301 1 2UL BOR . 
M 4 HOH A 1 401 2 HOH HOH . 
M 4 HOH A 2 402 13 HOH HOH . 
M 4 HOH A 3 403 14 HOH HOH . 
M 4 HOH A 4 404 18 HOH HOH . 
M 4 HOH A 5 405 22 HOH HOH . 
M 4 HOH A 6 406 26 HOH HOH . 
M 4 HOH A 7 407 28 HOH HOH . 
M 4 HOH A 8 408 33 HOH HOH . 
M 4 HOH A 9 409 41 HOH HOH . 
M 4 HOH A 10 410 44 HOH HOH . 
M 4 HOH A 11 411 48 HOH HOH . 
M 4 HOH A 12 412 50 HOH HOH . 
M 4 HOH A 13 413 54 HOH HOH . 
M 4 HOH A 14 414 64 HOH HOH . 
M 4 HOH A 15 415 65 HOH HOH . 
M 4 HOH A 16 416 67 HOH HOH . 
M 4 HOH A 17 417 73 HOH HOH . 
M 4 HOH A 18 418 76 HOH HOH . 
M 4 HOH A 19 419 80 HOH HOH . 
M 4 HOH A 20 420 81 HOH HOH . 
M 4 HOH A 21 421 88 HOH HOH . 
N 4 HOH B 1 401 1 HOH HOH . 
N 4 HOH B 2 402 6 HOH HOH . 
N 4 HOH B 3 403 15 HOH HOH . 
N 4 HOH B 4 404 16 HOH HOH . 
N 4 HOH B 5 405 25 HOH HOH . 
N 4 HOH B 6 406 43 HOH HOH . 
N 4 HOH B 7 407 60 HOH HOH . 
N 4 HOH B 8 408 62 HOH HOH . 
N 4 HOH B 9 409 72 HOH HOH . 
N 4 HOH B 10 410 77 HOH HOH . 
N 4 HOH B 11 411 78 HOH HOH . 
N 4 HOH B 12 412 83 HOH HOH . 
N 4 HOH B 13 413 86 HOH HOH . 
O 4 HOH C 1 401 10 HOH HOH . 
O 4 HOH C 2 402 20 HOH HOH . 
O 4 HOH C 3 403 21 HOH HOH . 
O 4 HOH C 4 404 23 HOH HOH . 
O 4 HOH C 5 405 31 HOH HOH . 
O 4 HOH C 6 406 32 HOH HOH . 
O 4 HOH C 7 407 34 HOH HOH . 
O 4 HOH C 8 408 45 HOH HOH . 
O 4 HOH C 9 409 46 HOH HOH . 
O 4 HOH C 10 410 47 HOH HOH . 
O 4 HOH C 11 411 49 HOH HOH . 
O 4 HOH C 12 412 52 HOH HOH . 
O 4 HOH C 13 413 58 HOH HOH . 
O 4 HOH C 14 414 59 HOH HOH . 
O 4 HOH C 15 415 70 HOH HOH . 
O 4 HOH C 16 416 75 HOH HOH . 
P 4 HOH D 1 401 4 HOH HOH . 
P 4 HOH D 2 402 7 HOH HOH . 
P 4 HOH D 3 403 17 HOH HOH . 
P 4 HOH D 4 404 24 HOH HOH . 
P 4 HOH D 5 405 30 HOH HOH . 
P 4 HOH D 6 406 56 HOH HOH . 
P 4 HOH D 7 407 85 HOH HOH . 
Q 4 HOH E 1 301 11 HOH HOH . 
Q 4 HOH E 2 302 19 HOH HOH . 
Q 4 HOH E 3 303 37 HOH HOH . 
Q 4 HOH E 4 304 51 HOH HOH . 
Q 4 HOH E 5 305 84 HOH HOH . 
Q 4 HOH E 6 306 87 HOH HOH . 
R 4 HOH F 1 401 8 HOH HOH . 
R 4 HOH F 2 402 9 HOH HOH . 
R 4 HOH F 3 403 27 HOH HOH . 
R 4 HOH F 4 404 53 HOH HOH . 
R 4 HOH F 5 405 69 HOH HOH . 
R 4 HOH F 6 406 71 HOH HOH . 
R 4 HOH F 7 407 79 HOH HOH . 
R 4 HOH F 8 408 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 2UL . . . L 2 40.099 66.658 56.061 1 75.28 ? C3 2UL 301 F 1 
HETATM 2 C C4 2UL . . . L 2 39.922 67.468 57.176 1 68.05 ? C4 2UL 301 F 1 
HETATM 3 C C5 2UL . . . L 2 38.943 67.152 58.112 1 65.85 ? C5 2UL 301 F 1 
HETATM 4 C C6 2UL . . . L 2 38.138 66.03 57.932 1 66.98 ? C6 2UL 301 F 1 
HETATM 5 C C7 2UL . . . L 2 38.314 65.219 56.815 1 70.5 ? C7 2UL 301 F 1 
HETATM 6 C C2 2UL . . . L 2 39.298 65.532 55.879 1 76.21 ? C2 2UL 301 F 1 
HETATM 7 C C1 2UL . . . L 2 39.495 64.638 54.646 1 72.9 ? C1 2UL 301 F 1 
HETATM 8 N N2 2UL . . . L 2 39.006 65.333 53.446 1 71.55 ? N2 2UL 301 F 1 
HETATM 9 C C8 2UL . . . L 2 40.983 64.266 54.467 1 76.95 ? C8 2UL 301 F 1 
HETATM 10 O O5 2UL . . . L 2 41.675 64.783 53.587 1 58.1 ? O5 2UL 301 F 1 
HETATM 11 N N1 2UL . . . L 2 41.435 63.347 55.322 1 76.57 ? N1 2UL 301 F 1 
HETATM 12 C C11 2UL . . . L 2 42.823 62.856 55.289 1 68.72 ? C11 2UL 301 F 1 
HETATM 13 B B 2UL . . . L 2 42.94 61.264 56.214 1 62.05 ? B 2UL 301 F 1 
HETATM 14 O O4 2UL . . . L 2 42.326 60.182 55.418 1 66.37 ? O4 2UL 301 F 1 
HETATM 15 O O3 2UL . . . L 2 42.523 61.449 57.616 1 65.25 ? O3 2UL 301 F 1 
HETATM 16 C C9 2UL . . . L 2 43.793 63.932 55.816 1 66.87 ? C9 2UL 301 F 1 
HETATM 17 C C16 2UL . . . L 2 43.601 64.281 57.302 1 69.41 ? C16 2UL 301 F 1 
HETATM 18 C C17 2UL . . . L 2 44.22 63.518 58.285 1 68.3 ? C17 2UL 301 F 1 
HETATM 19 C C21 2UL . . . L 2 42.825 65.375 57.672 1 68.92 ? C21 2UL 301 F 1 
HETATM 20 C C20 2UL . . . L 2 42.658 65.696 59.016 1 65.7 ? C20 2UL 301 F 1 
HETATM 21 C C19 2UL . . . L 2 43.272 64.926 59.996 1 65.9 ? C19 2UL 301 F 1 
HETATM 22 C C18 2UL . . . L 2 44.053 63.837 59.628 1 62.88 ? C18 2UL 301 F 1 
HETATM 23 C C22 2UL . . . L 2 44.735 62.987 60.696 1 58.5 ? C22 2UL 301 F 1 
HETATM 24 O O2 2UL . . . L 2 45.92 62.642 60.496 1 61.23 ? O2 2UL 301 F 1 
HETATM 25 O O1 2UL . . . L 2 44.07 62.683 61.708 1 56.87 ? O1 2UL 301 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#