data_4OQL # _model_server_result.job_id psckXdE3wWpZOGkshwZOaQ _model_server_result.datetime_utc '2024-10-13 02:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 4OQL # _exptl.entry_id 4OQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-deoxy-5-ethynyl-2',2'-difluorouridine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OQL _cell.length_a 113.385 _cell.length_b 116.419 _cell.length_c 108.118 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N # _chem_comp.formula 'C11 H10 F2 N2 O5' _chem_comp.formula_weight 288.204 _chem_comp.id F2U _chem_comp.mon_nstd_flag . _chem_comp.name "2'-deoxy-5-ethynyl-2',2'-difluorouridine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-deoxy-2',2'-difluoro-5-ethynyluridine" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 F2U trip 83 n n C28 C25 F2U sing 84 n n C25 C26 F2U doub 85 n n C25 C23 F2U sing 86 n n O24 C23 F2U doub 87 n n C03 O01 F2U sing 88 n n C03 C06 F2U sing 89 n n C26 N18 F2U sing 90 n n C23 N21 F2U sing 91 n n O08 C06 F2U sing 92 n n O08 C16 F2U sing 93 n n C06 C09 F2U sing 94 n n N18 C16 F2U sing 95 n n N18 C19 F2U sing 96 n n N21 C19 F2U sing 97 n n C16 C13 F2U sing 98 n n C19 O20 F2U doub 99 n n C09 C13 F2U sing 100 n n C09 O11 F2U sing 101 n n F14 C13 F2U sing 102 n n C13 F15 F2U sing 103 n n O01 H1 F2U sing 104 n n C03 H2 F2U sing 105 n n C03 H3 F2U sing 106 n n C06 H4 F2U sing 107 n n C09 H5 F2U sing 108 n n O11 H6 F2U sing 109 n n C16 H7 F2U sing 110 n n N21 H8 F2U sing 111 n n C26 H9 F2U sing 112 n n C29 H10 F2U sing 113 n n # _atom_sites.entry_id 4OQL _atom_sites.fract_transf_matrix[1][1] 0.00882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 401 SO4 SO4 . D 2 SO4 A 1 402 402 SO4 SO4 . E 2 SO4 A 1 403 403 SO4 SO4 . F 3 F2U A 1 404 501 F2U F2U . G 2 SO4 B 1 401 401 SO4 SO4 . H 2 SO4 B 1 402 402 SO4 SO4 . I 3 F2U B 1 403 501 F2U F2U . J 4 HOH A 1 501 3 HOH HOH . J 4 HOH A 2 502 4 HOH HOH . J 4 HOH A 3 503 6 HOH HOH . J 4 HOH A 4 504 7 HOH HOH . J 4 HOH A 5 505 10 HOH HOH . J 4 HOH A 6 506 11 HOH HOH . J 4 HOH A 7 507 15 HOH HOH . J 4 HOH A 8 508 19 HOH HOH . J 4 HOH A 9 509 25 HOH HOH . J 4 HOH A 10 510 26 HOH HOH . J 4 HOH A 11 511 27 HOH HOH . J 4 HOH A 12 512 28 HOH HOH . J 4 HOH A 13 513 31 HOH HOH . J 4 HOH A 14 514 32 HOH HOH . J 4 HOH A 15 515 33 HOH HOH . J 4 HOH A 16 516 37 HOH HOH . J 4 HOH A 17 517 38 HOH HOH . J 4 HOH A 18 518 39 HOH HOH . J 4 HOH A 19 519 40 HOH HOH . J 4 HOH A 20 520 41 HOH HOH . J 4 HOH A 21 521 44 HOH HOH . J 4 HOH A 22 522 45 HOH HOH . J 4 HOH A 23 523 47 HOH HOH . J 4 HOH A 24 524 48 HOH HOH . J 4 HOH A 25 525 51 HOH HOH . J 4 HOH A 26 526 52 HOH HOH . J 4 HOH A 27 527 53 HOH HOH . J 4 HOH A 28 528 54 HOH HOH . J 4 HOH A 29 529 56 HOH HOH . J 4 HOH A 30 530 57 HOH HOH . J 4 HOH A 31 531 61 HOH HOH . J 4 HOH A 32 532 62 HOH HOH . J 4 HOH A 33 533 66 HOH HOH . J 4 HOH A 34 534 67 HOH HOH . J 4 HOH A 35 535 68 HOH HOH . J 4 HOH A 36 536 69 HOH HOH . J 4 HOH A 37 537 74 HOH HOH . J 4 HOH A 38 538 75 HOH HOH . J 4 HOH A 39 539 77 HOH HOH . J 4 HOH A 40 540 78 HOH HOH . J 4 HOH A 41 541 79 HOH HOH . J 4 HOH A 42 542 80 HOH HOH . J 4 HOH A 43 543 81 HOH HOH . J 4 HOH A 44 544 83 HOH HOH . J 4 HOH A 45 545 85 HOH HOH . J 4 HOH A 46 546 87 HOH HOH . J 4 HOH A 47 547 88 HOH HOH . J 4 HOH A 48 548 90 HOH HOH . J 4 HOH A 49 549 97 HOH HOH . J 4 HOH A 50 550 98 HOH HOH . J 4 HOH A 51 551 101 HOH HOH . J 4 HOH A 52 552 102 HOH HOH . J 4 HOH A 53 553 103 HOH HOH . J 4 HOH A 54 554 104 HOH HOH . J 4 HOH A 55 555 107 HOH HOH . J 4 HOH A 56 556 108 HOH HOH . J 4 HOH A 57 557 112 HOH HOH . J 4 HOH A 58 558 115 HOH HOH . J 4 HOH A 59 559 116 HOH HOH . J 4 HOH A 60 560 118 HOH HOH . J 4 HOH A 61 561 119 HOH HOH . J 4 HOH A 62 562 120 HOH HOH . J 4 HOH A 63 563 123 HOH HOH . J 4 HOH A 64 564 124 HOH HOH . J 4 HOH A 65 565 126 HOH HOH . J 4 HOH A 66 566 127 HOH HOH . J 4 HOH A 67 567 128 HOH HOH . J 4 HOH A 68 568 131 HOH HOH . J 4 HOH A 69 569 132 HOH HOH . J 4 HOH A 70 570 135 HOH HOH . J 4 HOH A 71 571 136 HOH HOH . J 4 HOH A 72 572 137 HOH HOH . J 4 HOH A 73 573 139 HOH HOH . J 4 HOH A 74 574 143 HOH HOH . J 4 HOH A 75 575 145 HOH HOH . J 4 HOH A 76 576 147 HOH HOH . J 4 HOH A 77 577 149 HOH HOH . J 4 HOH A 78 578 150 HOH HOH . J 4 HOH A 79 579 152 HOH HOH . J 4 HOH A 80 580 156 HOH HOH . J 4 HOH A 81 581 157 HOH HOH . J 4 HOH A 82 582 159 HOH HOH . J 4 HOH A 83 583 162 HOH HOH . J 4 HOH A 84 584 165 HOH HOH . J 4 HOH A 85 585 167 HOH HOH . J 4 HOH A 86 586 168 HOH HOH . J 4 HOH A 87 587 170 HOH HOH . J 4 HOH A 88 588 171 HOH HOH . J 4 HOH A 89 589 172 HOH HOH . J 4 HOH A 90 590 175 HOH HOH . J 4 HOH A 91 591 177 HOH HOH . J 4 HOH A 92 592 178 HOH HOH . J 4 HOH A 93 593 183 HOH HOH . J 4 HOH A 94 594 185 HOH HOH . J 4 HOH A 95 595 188 HOH HOH . J 4 HOH A 96 596 189 HOH HOH . J 4 HOH A 97 597 190 HOH HOH . J 4 HOH A 98 598 191 HOH HOH . J 4 HOH A 99 599 192 HOH HOH . J 4 HOH A 100 600 193 HOH HOH . J 4 HOH A 101 601 194 HOH HOH . J 4 HOH A 102 602 197 HOH HOH . J 4 HOH A 103 603 198 HOH HOH . J 4 HOH A 104 604 201 HOH HOH . J 4 HOH A 105 605 202 HOH HOH . J 4 HOH A 106 606 203 HOH HOH . J 4 HOH A 107 607 204 HOH HOH . J 4 HOH A 108 608 205 HOH HOH . J 4 HOH A 109 609 206 HOH HOH . J 4 HOH A 110 610 207 HOH HOH . J 4 HOH A 111 611 208 HOH HOH . J 4 HOH A 112 612 209 HOH HOH . J 4 HOH A 113 613 210 HOH HOH . J 4 HOH A 114 614 229 HOH HOH . J 4 HOH A 115 615 240 HOH HOH . J 4 HOH A 116 616 241 HOH HOH . J 4 HOH A 117 617 247 HOH HOH . J 4 HOH A 118 618 248 HOH HOH . K 4 HOH B 1 501 1 HOH HOH . K 4 HOH B 2 502 2 HOH HOH . K 4 HOH B 3 503 5 HOH HOH . K 4 HOH B 4 504 8 HOH HOH . K 4 HOH B 5 505 9 HOH HOH . K 4 HOH B 6 506 12 HOH HOH . K 4 HOH B 7 507 13 HOH HOH . K 4 HOH B 8 508 14 HOH HOH . K 4 HOH B 9 509 16 HOH HOH . K 4 HOH B 10 510 17 HOH HOH . K 4 HOH B 11 511 18 HOH HOH . K 4 HOH B 12 512 20 HOH HOH . K 4 HOH B 13 513 21 HOH HOH . K 4 HOH B 14 514 22 HOH HOH . K 4 HOH B 15 515 23 HOH HOH . K 4 HOH B 16 516 24 HOH HOH . K 4 HOH B 17 517 29 HOH HOH . K 4 HOH B 18 518 30 HOH HOH . K 4 HOH B 19 519 34 HOH HOH . K 4 HOH B 20 520 35 HOH HOH . K 4 HOH B 21 521 36 HOH HOH . K 4 HOH B 22 522 42 HOH HOH . K 4 HOH B 23 523 43 HOH HOH . K 4 HOH B 24 524 46 HOH HOH . K 4 HOH B 25 525 49 HOH HOH . K 4 HOH B 26 526 50 HOH HOH . K 4 HOH B 27 527 55 HOH HOH . K 4 HOH B 28 528 58 HOH HOH . K 4 HOH B 29 529 59 HOH HOH . K 4 HOH B 30 530 60 HOH HOH . K 4 HOH B 31 531 63 HOH HOH . K 4 HOH B 32 532 64 HOH HOH . K 4 HOH B 33 533 65 HOH HOH . K 4 HOH B 34 534 70 HOH HOH . K 4 HOH B 35 535 71 HOH HOH . K 4 HOH B 36 536 72 HOH HOH . K 4 HOH B 37 537 73 HOH HOH . K 4 HOH B 38 538 76 HOH HOH . K 4 HOH B 39 539 82 HOH HOH . K 4 HOH B 40 540 84 HOH HOH . K 4 HOH B 41 541 86 HOH HOH . K 4 HOH B 42 542 89 HOH HOH . K 4 HOH B 43 543 91 HOH HOH . K 4 HOH B 44 544 92 HOH HOH . K 4 HOH B 45 545 93 HOH HOH . K 4 HOH B 46 546 94 HOH HOH . K 4 HOH B 47 547 95 HOH HOH . K 4 HOH B 48 548 96 HOH HOH . K 4 HOH B 49 549 99 HOH HOH . K 4 HOH B 50 550 100 HOH HOH . K 4 HOH B 51 551 105 HOH HOH . K 4 HOH B 52 552 106 HOH HOH . K 4 HOH B 53 553 109 HOH HOH . K 4 HOH B 54 554 110 HOH HOH . K 4 HOH B 55 555 111 HOH HOH . K 4 HOH B 56 556 113 HOH HOH . K 4 HOH B 57 557 114 HOH HOH . K 4 HOH B 58 558 117 HOH HOH . K 4 HOH B 59 559 121 HOH HOH . K 4 HOH B 60 560 122 HOH HOH . K 4 HOH B 61 561 125 HOH HOH . K 4 HOH B 62 562 129 HOH HOH . K 4 HOH B 63 563 130 HOH HOH . K 4 HOH B 64 564 133 HOH HOH . K 4 HOH B 65 565 134 HOH HOH . K 4 HOH B 66 566 138 HOH HOH . K 4 HOH B 67 567 140 HOH HOH . K 4 HOH B 68 568 141 HOH HOH . K 4 HOH B 69 569 142 HOH HOH . K 4 HOH B 70 570 144 HOH HOH . K 4 HOH B 71 571 146 HOH HOH . K 4 HOH B 72 572 148 HOH HOH . K 4 HOH B 73 573 151 HOH HOH . K 4 HOH B 74 574 153 HOH HOH . K 4 HOH B 75 575 154 HOH HOH . K 4 HOH B 76 576 155 HOH HOH . K 4 HOH B 77 577 158 HOH HOH . K 4 HOH B 78 578 160 HOH HOH . K 4 HOH B 79 579 161 HOH HOH . K 4 HOH B 80 580 163 HOH HOH . K 4 HOH B 81 581 164 HOH HOH . K 4 HOH B 82 582 166 HOH HOH . K 4 HOH B 83 583 169 HOH HOH . K 4 HOH B 84 584 173 HOH HOH . K 4 HOH B 85 585 174 HOH HOH . K 4 HOH B 86 586 176 HOH HOH . K 4 HOH B 87 587 179 HOH HOH . K 4 HOH B 88 588 180 HOH HOH . K 4 HOH B 89 589 181 HOH HOH . K 4 HOH B 90 590 182 HOH HOH . K 4 HOH B 91 591 184 HOH HOH . K 4 HOH B 92 592 186 HOH HOH . K 4 HOH B 93 593 187 HOH HOH . K 4 HOH B 94 594 195 HOH HOH . K 4 HOH B 95 595 196 HOH HOH . K 4 HOH B 96 596 199 HOH HOH . K 4 HOH B 97 597 200 HOH HOH . K 4 HOH B 98 598 211 HOH HOH . K 4 HOH B 99 599 212 HOH HOH . K 4 HOH B 100 600 213 HOH HOH . K 4 HOH B 101 601 214 HOH HOH . K 4 HOH B 102 602 215 HOH HOH . K 4 HOH B 103 603 216 HOH HOH . K 4 HOH B 104 604 217 HOH HOH . K 4 HOH B 105 605 218 HOH HOH . K 4 HOH B 106 606 219 HOH HOH . K 4 HOH B 107 607 220 HOH HOH . K 4 HOH B 108 608 221 HOH HOH . K 4 HOH B 109 609 222 HOH HOH . K 4 HOH B 110 610 223 HOH HOH . K 4 HOH B 111 611 224 HOH HOH . K 4 HOH B 112 612 225 HOH HOH . K 4 HOH B 113 613 226 HOH HOH . K 4 HOH B 114 614 227 HOH HOH . K 4 HOH B 115 615 228 HOH HOH . K 4 HOH B 116 616 230 HOH HOH . K 4 HOH B 117 617 231 HOH HOH . K 4 HOH B 118 618 232 HOH HOH . K 4 HOH B 119 619 233 HOH HOH . K 4 HOH B 120 620 234 HOH HOH . K 4 HOH B 121 621 235 HOH HOH . K 4 HOH B 122 622 236 HOH HOH . K 4 HOH B 123 623 237 HOH HOH . K 4 HOH B 124 624 238 HOH HOH . K 4 HOH B 125 625 239 HOH HOH . K 4 HOH B 126 626 242 HOH HOH . K 4 HOH B 127 627 243 HOH HOH . K 4 HOH B 128 628 244 HOH HOH . K 4 HOH B 129 629 245 HOH HOH . K 4 HOH B 130 630 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 F2U . . . I 3 16.582 36.151 44.208 1 25.55 ? O01 F2U 403 B 1 HETATM 2 C C03 F2U . . . I 3 16.338 36.982 45.338 1 22.33 ? C03 F2U 403 B 1 HETATM 3 C C06 F2U . . . I 3 17.523 37.924 45.548 1 22.38 ? C06 F2U 403 B 1 HETATM 4 O O08 F2U . . . I 3 18.76 37.155 45.69 1 19.83 ? O08 F2U 403 B 1 HETATM 5 C C09 F2U . . . I 3 17.754 38.899 44.403 1 19.73 ? C09 F2U 403 B 1 HETATM 6 O O11 F2U . . . I 3 17.982 40.192 44.941 1 22.24 ? O11 F2U 403 B 1 HETATM 7 C C13 F2U . . . I 3 18.958 38.342 43.662 1 16.35 ? C13 F2U 403 B 1 HETATM 8 F F14 F2U . . . I 3 18.638 37.389 42.76 1 15.97 ? F14 F2U 403 B 1 HETATM 9 F F15 F2U . . . I 3 19.599 39.317 43.009 1 15.3 ? F15 F2U 403 B 1 HETATM 10 C C16 F2U . . . I 3 19.746 37.741 44.811 1 14.15 ? C16 F2U 403 B 1 HETATM 11 N N18 F2U . . . I 3 20.724 36.696 44.515 1 13.94 ? N18 F2U 403 B 1 HETATM 12 C C19 F2U . . . I 3 22.062 37.069 44.587 1 13.91 ? C19 F2U 403 B 1 HETATM 13 O O20 F2U . . . I 3 22.436 38.217 44.842 1 16.21 ? O20 F2U 403 B 1 HETATM 14 N N21 F2U . . . I 3 22.967 36.059 44.339 1 12.58 ? N21 F2U 403 B 1 HETATM 15 C C23 F2U . . . I 3 22.667 34.748 44.048 1 10.72 ? C23 F2U 403 B 1 HETATM 16 O O24 F2U . . . I 3 23.525 33.893 43.846 1 11.37 ? O24 F2U 403 B 1 HETATM 17 C C25 F2U . . . I 3 21.232 34.415 43.993 1 13.04 ? C25 F2U 403 B 1 HETATM 18 C C26 F2U . . . I 3 20.339 35.392 44.238 1 15.63 ? C26 F2U 403 B 1 HETATM 19 C C28 F2U . . . I 3 20.866 33.075 43.694 1 11.09 ? C28 F2U 403 B 1 HETATM 20 C C29 F2U . . . I 3 20.594 31.936 43.44 1 10.51 ? C29 F2U 403 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #