data_4OQY # _model_server_result.job_id BZGKSRAs1K3vVHWqRihrGw _model_server_result.datetime_utc '2025-01-23 06:52:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 4OQY # _exptl.entry_id 4OQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OQY _cell.length_a 45.32 _cell.length_b 68.24 _cell.length_c 181.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 224 n n PA O2A NDP sing 225 n n PA O5B NDP sing 226 n n PA O3 NDP sing 227 n n O2A HOA2 NDP sing 228 n n O5B C5B NDP sing 229 n n C5B C4B NDP sing 230 n n C5B H51A NDP sing 231 n n C5B H52A NDP sing 232 n n C4B O4B NDP sing 233 n n C4B C3B NDP sing 234 n n C4B H4B NDP sing 235 n n O4B C1B NDP sing 236 n n C3B O3B NDP sing 237 n n C3B C2B NDP sing 238 n n C3B H3B NDP sing 239 n n O3B HO3A NDP sing 240 n n C2B O2B NDP sing 241 n n C2B C1B NDP sing 242 n n C2B H2B NDP sing 243 n n O2B P2B NDP sing 244 n n C1B N9A NDP sing 245 n n C1B H1B NDP sing 246 n n N9A C8A NDP sing 247 n y N9A C4A NDP sing 248 n y C8A N7A NDP doub 249 n y C8A H8A NDP sing 250 n n N7A C5A NDP sing 251 n y C5A C6A NDP sing 252 n y C5A C4A NDP doub 253 n y C6A N6A NDP sing 254 n n C6A N1A NDP doub 255 n y N6A H61A NDP sing 256 n n N6A H62A NDP sing 257 n n N1A C2A NDP sing 258 n y C2A N3A NDP doub 259 n y C2A H2A NDP sing 260 n n N3A C4A NDP sing 261 n y O3 PN NDP sing 262 n n PN O1N NDP doub 263 n n PN O2N NDP sing 264 n n PN O5D NDP sing 265 n n O2N H21N NDP sing 266 n n O5D C5D NDP sing 267 n n C5D C4D NDP sing 268 n n C5D H51N NDP sing 269 n n C5D H52N NDP sing 270 n n C4D O4D NDP sing 271 n n C4D C3D NDP sing 272 n n C4D H4D NDP sing 273 n n O4D C1D NDP sing 274 n n C3D O3D NDP sing 275 n n C3D C2D NDP sing 276 n n C3D H3D NDP sing 277 n n O3D HO3N NDP sing 278 n n C2D O2D NDP sing 279 n n C2D C1D NDP sing 280 n n C2D H2D NDP sing 281 n n O2D HO2N NDP sing 282 n n C1D N1N NDP sing 283 n n C1D H1D NDP sing 284 n n N1N C2N NDP sing 285 n n N1N C6N NDP sing 286 n n C2N C3N NDP doub 287 n n C2N H2N NDP sing 288 n n C3N C7N NDP sing 289 n n C3N C4N NDP sing 290 n n C7N O7N NDP doub 291 n n C7N N7N NDP sing 292 n n N7N H71N NDP sing 293 n n N7N H72N NDP sing 294 n n C4N C5N NDP sing 295 n n C4N H41N NDP sing 296 n n C4N H42N NDP sing 297 n n C5N C6N NDP doub 298 n n C5N H5N NDP sing 299 n n C6N H6N NDP sing 300 n n P2B O1X NDP doub 301 n n P2B O2X NDP sing 302 n n P2B O3X NDP sing 303 n n O2X HOP2 NDP sing 304 n n O3X HOP3 NDP sing 305 n n # _atom_sites.entry_id 4OQY _atom_sites.fract_transf_matrix[1][1] 0.022065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 1000 1000 NDP NDP . D 3 HOH A 1 1101 2 HOH HOH . D 3 HOH A 2 1102 10 HOH HOH . D 3 HOH A 3 1103 11 HOH HOH . D 3 HOH A 4 1104 12 HOH HOH . D 3 HOH A 5 1105 13 HOH HOH . D 3 HOH A 6 1106 14 HOH HOH . D 3 HOH A 7 1107 20 HOH HOH . D 3 HOH A 8 1108 21 HOH HOH . D 3 HOH A 9 1109 24 HOH HOH . D 3 HOH A 10 1110 25 HOH HOH . D 3 HOH A 11 1111 26 HOH HOH . D 3 HOH A 12 1112 53 HOH HOH . D 3 HOH A 13 1113 54 HOH HOH . D 3 HOH A 14 1114 56 HOH HOH . D 3 HOH A 15 1115 57 HOH HOH . D 3 HOH A 16 1116 58 HOH HOH . D 3 HOH A 17 1117 60 HOH HOH . D 3 HOH A 18 1118 63 HOH HOH . D 3 HOH A 19 1119 65 HOH HOH . D 3 HOH A 20 1120 74 HOH HOH . D 3 HOH A 21 1121 78 HOH HOH . D 3 HOH A 22 1122 95 HOH HOH . D 3 HOH A 23 1123 98 HOH HOH . D 3 HOH A 24 1124 101 HOH HOH . D 3 HOH A 25 1125 102 HOH HOH . D 3 HOH A 26 1126 105 HOH HOH . D 3 HOH A 27 1127 108 HOH HOH . D 3 HOH A 28 1128 109 HOH HOH . D 3 HOH A 29 1129 111 HOH HOH . D 3 HOH A 30 1130 113 HOH HOH . D 3 HOH A 31 1131 121 HOH HOH . D 3 HOH A 32 1132 123 HOH HOH . D 3 HOH A 33 1133 136 HOH HOH . D 3 HOH A 34 1134 137 HOH HOH . D 3 HOH A 35 1135 138 HOH HOH . D 3 HOH A 36 1136 142 HOH HOH . D 3 HOH A 37 1137 143 HOH HOH . D 3 HOH A 38 1138 144 HOH HOH . D 3 HOH A 39 1139 147 HOH HOH . D 3 HOH A 40 1140 150 HOH HOH . D 3 HOH A 41 1141 152 HOH HOH . D 3 HOH A 42 1142 154 HOH HOH . D 3 HOH A 43 1143 156 HOH HOH . D 3 HOH A 44 1144 157 HOH HOH . D 3 HOH A 45 1145 159 HOH HOH . D 3 HOH A 46 1146 162 HOH HOH . D 3 HOH A 47 1147 166 HOH HOH . D 3 HOH A 48 1148 168 HOH HOH . D 3 HOH A 49 1149 169 HOH HOH . D 3 HOH A 50 1150 172 HOH HOH . D 3 HOH A 51 1151 174 HOH HOH . D 3 HOH A 52 1152 180 HOH HOH . D 3 HOH A 53 1153 188 HOH HOH . D 3 HOH A 54 1154 194 HOH HOH . D 3 HOH A 55 1155 204 HOH HOH . D 3 HOH A 56 1156 213 HOH HOH . D 3 HOH A 57 1157 222 HOH HOH . D 3 HOH A 58 1158 223 HOH HOH . D 3 HOH A 59 1159 230 HOH HOH . D 3 HOH A 60 1160 234 HOH HOH . D 3 HOH A 61 1161 245 HOH HOH . D 3 HOH A 62 1162 253 HOH HOH . D 3 HOH A 63 1163 261 HOH HOH . D 3 HOH A 64 1164 279 HOH HOH . D 3 HOH A 65 1165 3 HOH HOH . D 3 HOH A 66 1166 17 HOH HOH . D 3 HOH A 67 1167 19 HOH HOH . D 3 HOH A 68 1168 40 HOH HOH . D 3 HOH A 69 1169 45 HOH HOH . D 3 HOH A 70 1170 118 HOH HOH . D 3 HOH A 71 1171 124 HOH HOH . D 3 HOH A 72 1172 140 HOH HOH . D 3 HOH A 73 1173 151 HOH HOH . D 3 HOH A 74 1174 153 HOH HOH . D 3 HOH A 75 1175 216 HOH HOH . D 3 HOH A 76 1176 224 HOH HOH . D 3 HOH A 77 1177 260 HOH HOH . E 3 HOH B 1 301 5 HOH HOH . E 3 HOH B 2 302 8 HOH HOH . E 3 HOH B 3 303 22 HOH HOH . E 3 HOH B 4 304 23 HOH HOH . E 3 HOH B 5 305 27 HOH HOH . E 3 HOH B 6 306 32 HOH HOH . E 3 HOH B 7 307 42 HOH HOH . E 3 HOH B 8 308 70 HOH HOH . E 3 HOH B 9 309 72 HOH HOH . E 3 HOH B 10 310 84 HOH HOH . E 3 HOH B 11 311 114 HOH HOH . E 3 HOH B 12 312 141 HOH HOH . E 3 HOH B 13 313 218 HOH HOH . E 3 HOH B 14 314 246 HOH HOH . E 3 HOH B 15 315 254 HOH HOH . E 3 HOH B 16 316 273 HOH HOH . E 3 HOH B 17 317 1 HOH HOH . E 3 HOH B 18 318 9 HOH HOH . E 3 HOH B 19 319 29 HOH HOH . E 3 HOH B 20 320 30 HOH HOH . E 3 HOH B 21 321 33 HOH HOH . E 3 HOH B 22 322 34 HOH HOH . E 3 HOH B 23 323 35 HOH HOH . E 3 HOH B 24 324 36 HOH HOH . E 3 HOH B 25 325 37 HOH HOH . E 3 HOH B 26 326 38 HOH HOH . E 3 HOH B 27 327 43 HOH HOH . E 3 HOH B 28 328 44 HOH HOH . E 3 HOH B 29 329 47 HOH HOH . E 3 HOH B 30 330 48 HOH HOH . E 3 HOH B 31 331 49 HOH HOH . E 3 HOH B 32 332 51 HOH HOH . E 3 HOH B 33 333 52 HOH HOH . E 3 HOH B 34 334 59 HOH HOH . E 3 HOH B 35 335 66 HOH HOH . E 3 HOH B 36 336 67 HOH HOH . E 3 HOH B 37 337 68 HOH HOH . E 3 HOH B 38 338 69 HOH HOH . E 3 HOH B 39 339 71 HOH HOH . E 3 HOH B 40 340 73 HOH HOH . E 3 HOH B 41 341 79 HOH HOH . E 3 HOH B 42 342 83 HOH HOH . E 3 HOH B 43 343 85 HOH HOH . E 3 HOH B 44 344 86 HOH HOH . E 3 HOH B 45 345 87 HOH HOH . E 3 HOH B 46 346 89 HOH HOH . E 3 HOH B 47 347 90 HOH HOH . E 3 HOH B 48 348 91 HOH HOH . E 3 HOH B 49 349 92 HOH HOH . E 3 HOH B 50 350 97 HOH HOH . E 3 HOH B 51 351 100 HOH HOH . E 3 HOH B 52 352 103 HOH HOH . E 3 HOH B 53 353 104 HOH HOH . E 3 HOH B 54 354 106 HOH HOH . E 3 HOH B 55 355 110 HOH HOH . E 3 HOH B 56 356 112 HOH HOH . E 3 HOH B 57 357 119 HOH HOH . E 3 HOH B 58 358 122 HOH HOH . E 3 HOH B 59 359 127 HOH HOH . E 3 HOH B 60 360 128 HOH HOH . E 3 HOH B 61 361 135 HOH HOH . E 3 HOH B 62 362 163 HOH HOH . E 3 HOH B 63 363 177 HOH HOH . E 3 HOH B 64 364 184 HOH HOH . E 3 HOH B 65 365 193 HOH HOH . E 3 HOH B 66 366 200 HOH HOH . E 3 HOH B 67 367 205 HOH HOH . E 3 HOH B 68 368 208 HOH HOH . E 3 HOH B 69 369 209 HOH HOH . E 3 HOH B 70 370 212 HOH HOH . E 3 HOH B 71 371 215 HOH HOH . E 3 HOH B 72 372 217 HOH HOH . E 3 HOH B 73 373 229 HOH HOH . E 3 HOH B 74 374 276 HOH HOH . E 3 HOH B 75 375 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 10.495 59.892 11.018 1 24.69 ? PA NDP 1000 A 1 HETATM 2 O O1A NDP . . . C 2 11.678 58.956 11.058 1 23.73 ? O1A NDP 1000 A 1 HETATM 3 O O2A NDP . . . C 2 10.584 61.213 11.762 1 23 ? O2A NDP 1000 A 1 HETATM 4 O O5B NDP . . . C 2 10.196 60.169 9.445 1 23.74 ? O5B NDP 1000 A 1 HETATM 5 C C5B NDP . . . C 2 10.271 59.089 8.508 1 22.4 ? C5B NDP 1000 A 1 HETATM 6 C C4B NDP . . . C 2 9.91 59.492 7.08 1 21.49 ? C4B NDP 1000 A 1 HETATM 7 O O4B NDP . . . C 2 10.851 60.44 6.532 1 20.28 ? O4B NDP 1000 A 1 HETATM 8 C C3B NDP . . . C 2 9.952 58.244 6.198 1 20.75 ? C3B NDP 1000 A 1 HETATM 9 O O3B NDP . . . C 2 8.975 58.289 5.146 1 21.32 ? O3B NDP 1000 A 1 HETATM 10 C C2B NDP . . . C 2 11.372 58.304 5.655 1 20.78 ? C2B NDP 1000 A 1 HETATM 11 O O2B NDP . . . C 2 11.628 57.493 4.494 1 20.07 ? O2B NDP 1000 A 1 HETATM 12 C C1B NDP . . . C 2 11.458 59.806 5.407 1 21 ? C1B NDP 1000 A 1 HETATM 13 N N9A NDP . . . C 2 12.835 60.308 5.213 1 21.41 ? N9A NDP 1000 A 1 HETATM 14 C C8A NDP . . . C 2 13.834 60.508 6.113 1 22.09 ? C8A NDP 1000 A 1 HETATM 15 N N7A NDP . . . C 2 14.94 61.027 5.488 1 22.07 ? N7A NDP 1000 A 1 HETATM 16 C C5A NDP . . . C 2 14.626 61.157 4.177 1 21.87 ? C5A NDP 1000 A 1 HETATM 17 C C6A NDP . . . C 2 15.293 61.631 2.947 1 22.04 ? C6A NDP 1000 A 1 HETATM 18 N N6A NDP . . . C 2 16.561 62.084 2.977 1 22.01 ? N6A NDP 1000 A 1 HETATM 19 N N1A NDP . . . C 2 14.58 61.594 1.793 1 22.37 ? N1A NDP 1000 A 1 HETATM 20 C C2A NDP . . . C 2 13.299 61.154 1.72 1 21.66 ? C2A NDP 1000 A 1 HETATM 21 N N3A NDP . . . C 2 12.617 60.7 2.792 1 21.23 ? N3A NDP 1000 A 1 HETATM 22 C C4A NDP . . . C 2 13.231 60.687 4.009 1 21.65 ? C4A NDP 1000 A 1 HETATM 23 O O3 NDP . . . C 2 9.196 59.028 11.504 1 22.86 ? O3 NDP 1000 A 1 HETATM 24 P PN NDP . . . C 2 7.73 59.582 11.949 1 21.95 ? PN NDP 1000 A 1 HETATM 25 O O1N NDP . . . C 2 7.435 59.172 13.375 1 22.19 ? O1N NDP 1000 A 1 HETATM 26 O O2N NDP . . . C 2 6.707 59.091 10.95 1 19.79 ? O2N NDP 1000 A 1 HETATM 27 O O5D NDP . . . C 2 7.904 61.192 11.983 1 19.76 ? O5D NDP 1000 A 1 HETATM 28 C C5D NDP . . . C 2 7.56 62.067 10.903 1 18.85 ? C5D NDP 1000 A 1 HETATM 29 C C4D NDP . . . C 2 7.443 63.507 11.411 1 17.97 ? C4D NDP 1000 A 1 HETATM 30 O O4D NDP . . . C 2 6.456 63.688 12.442 1 16.98 ? O4D NDP 1000 A 1 HETATM 31 C C3D NDP . . . C 2 8.777 63.959 12.015 1 16.94 ? C3D NDP 1000 A 1 HETATM 32 O O3D NDP . . . C 2 9.051 65.253 11.484 1 16.83 ? O3D NDP 1000 A 1 HETATM 33 C C2D NDP . . . C 2 8.505 63.927 13.516 1 16.8 ? C2D NDP 1000 A 1 HETATM 34 O O2D NDP . . . C 2 9.294 64.74 14.376 1 15.82 ? O2D NDP 1000 A 1 HETATM 35 C C1D NDP . . . C 2 7.041 64.385 13.549 1 16.82 ? C1D NDP 1000 A 1 HETATM 36 N N1N NDP . . . C 2 6.255 64.01 14.72 1 17.18 ? N1N NDP 1000 A 1 HETATM 37 C C2N NDP . . . C 2 6.386 62.746 15.161 1 17.11 ? C2N NDP 1000 A 1 HETATM 38 C C3N NDP . . . C 2 5.668 62.253 16.25 1 17.14 ? C3N NDP 1000 A 1 HETATM 39 C C7N NDP . . . C 2 5.876 60.819 16.685 1 17.21 ? C7N NDP 1000 A 1 HETATM 40 O O7N NDP . . . C 2 5.507 60.502 17.802 1 17.23 ? O7N NDP 1000 A 1 HETATM 41 N N7N NDP . . . C 2 6.426 59.897 15.873 1 17.16 ? N7N NDP 1000 A 1 HETATM 42 C C4N NDP . . . C 2 4.654 63.161 16.966 1 16.69 ? C4N NDP 1000 A 1 HETATM 43 C C5N NDP . . . C 2 4.59 64.513 16.391 1 16.34 ? C5N NDP 1000 A 1 HETATM 44 C C6N NDP . . . C 2 5.379 64.884 15.287 1 16.73 ? C6N NDP 1000 A 1 HETATM 45 P P2B NDP . . . C 2 11.906 55.911 4.622 1 19.41 ? P2B NDP 1000 A 1 HETATM 46 O O1X NDP . . . C 2 12.194 55.586 3.183 1 18.19 ? O1X NDP 1000 A 1 HETATM 47 O O2X NDP . . . C 2 10.622 55.316 5.188 1 19.55 ? O2X NDP 1000 A 1 HETATM 48 O O3X NDP . . . C 2 13.105 55.912 5.543 1 19.78 ? O3X NDP 1000 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 48 #