data_4OR4
#
_model_server_result.job_id            zbNpUkSIudAhU8pENVYMVg 
_model_server_result.datetime_utc      '2024-11-05 04:49:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4or4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    4OR4 
#
_exptl.entry_id    4OR4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.243 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OR4 
_cell.length_a            42.936 
_cell.length_b            90.698 
_cell.length_c            95.774 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OR4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C11 H19 N5 O11 P2' 
_chem_comp.formula_weight    459.243 
_chem_comp.id                M7G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A M7G doub 218 n n 
PA O2A M7G sing 219 n n 
PA O3A M7G sing 220 n n 
PA O5' M7G sing 221 n n 
O2A HOA2 M7G sing 222 n n 
O3A PB M7G sing 223 n n 
O5' C5' M7G sing 224 n n 
PB O1B M7G doub 225 n n 
PB O2B M7G sing 226 n n 
PB O3B M7G sing 227 n n 
O2B HOB2 M7G sing 228 n n 
O3B HOB3 M7G sing 229 n n 
C5' C4' M7G sing 230 n n 
C5' "H5'1" M7G sing 231 n n 
C5' "H5'2" M7G sing 232 n n 
C4' O4' M7G sing 233 n n 
C4' C3' M7G sing 234 n n 
C4' H4' M7G sing 235 n n 
O4' C1' M7G sing 236 n n 
C3' O3' M7G sing 237 n n 
C3' C2' M7G sing 238 n n 
C3' H3' M7G sing 239 n n 
O3' HO3' M7G sing 240 n n 
C2' O2' M7G sing 241 n n 
C2' C1' M7G sing 242 n n 
C2' H2' M7G sing 243 n n 
O2' HO2' M7G sing 244 n n 
C1' N9 M7G sing 245 n n 
C1' H1' M7G sing 246 n n 
N9 C8 M7G sing 247 n n 
N9 C4 M7G sing 248 n n 
C8 N7 M7G sing 249 n n 
C8 H81 M7G sing 250 n n 
C8 H82 M7G sing 251 n n 
N7 CM7 M7G sing 252 n n 
N7 C5 M7G sing 253 n n 
CM7 HM71 M7G sing 254 n n 
CM7 HM72 M7G sing 255 n n 
CM7 HM73 M7G sing 256 n n 
C5 C6 M7G sing 257 n n 
C5 C4 M7G doub 258 n n 
C6 O6 M7G doub 259 n n 
C6 N1 M7G sing 260 n n 
N1 C2 M7G sing 261 n n 
N1 HN1 M7G sing 262 n n 
C2 N2 M7G sing 263 n n 
C2 N3 M7G doub 264 n n 
N2 HN21 M7G sing 265 n n 
N2 HN22 M7G sing 266 n n 
N3 C4 M7G sing 267 n n 
#
_atom_sites.entry_id                     4OR4 
_atom_sites.fract_transf_matrix[1][1]    0.02329 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011026 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 M7G A 1 501 1 M7G M7G . 
D 2 M7G B 1 501 1 M7G M7G . 
E 3 HOH A 1 601 1 HOH HOH . 
E 3 HOH A 2 602 3 HOH HOH . 
E 3 HOH A 3 603 5 HOH HOH . 
E 3 HOH A 4 604 8 HOH HOH . 
E 3 HOH A 5 605 10 HOH HOH . 
E 3 HOH A 6 606 16 HOH HOH . 
E 3 HOH A 7 607 18 HOH HOH . 
E 3 HOH A 8 608 19 HOH HOH . 
E 3 HOH A 9 609 21 HOH HOH . 
E 3 HOH A 10 610 22 HOH HOH . 
E 3 HOH A 11 611 23 HOH HOH . 
E 3 HOH A 12 612 24 HOH HOH . 
E 3 HOH A 13 613 26 HOH HOH . 
E 3 HOH A 14 614 27 HOH HOH . 
E 3 HOH A 15 615 33 HOH HOH . 
E 3 HOH A 16 616 38 HOH HOH . 
E 3 HOH A 17 617 39 HOH HOH . 
E 3 HOH A 18 618 40 HOH HOH . 
E 3 HOH A 19 619 42 HOH HOH . 
E 3 HOH A 20 620 44 HOH HOH . 
E 3 HOH A 21 621 47 HOH HOH . 
E 3 HOH A 22 622 51 HOH HOH . 
E 3 HOH A 23 623 53 HOH HOH . 
E 3 HOH A 24 624 55 HOH HOH . 
E 3 HOH A 25 625 56 HOH HOH . 
E 3 HOH A 26 626 59 HOH HOH . 
E 3 HOH A 27 627 66 HOH HOH . 
E 3 HOH A 28 628 71 HOH HOH . 
E 3 HOH A 29 629 72 HOH HOH . 
E 3 HOH A 30 630 76 HOH HOH . 
E 3 HOH A 31 631 77 HOH HOH . 
E 3 HOH A 32 632 78 HOH HOH . 
E 3 HOH A 33 633 80 HOH HOH . 
E 3 HOH A 34 634 81 HOH HOH . 
E 3 HOH A 35 635 82 HOH HOH . 
E 3 HOH A 36 636 84 HOH HOH . 
E 3 HOH A 37 637 85 HOH HOH . 
E 3 HOH A 38 638 88 HOH HOH . 
E 3 HOH A 39 639 89 HOH HOH . 
E 3 HOH A 40 640 90 HOH HOH . 
E 3 HOH A 41 641 96 HOH HOH . 
E 3 HOH A 42 642 98 HOH HOH . 
E 3 HOH A 43 643 99 HOH HOH . 
E 3 HOH A 44 644 101 HOH HOH . 
E 3 HOH A 45 645 105 HOH HOH . 
E 3 HOH A 46 646 106 HOH HOH . 
E 3 HOH A 47 647 107 HOH HOH . 
E 3 HOH A 48 648 110 HOH HOH . 
E 3 HOH A 49 649 112 HOH HOH . 
E 3 HOH A 50 650 114 HOH HOH . 
E 3 HOH A 51 651 115 HOH HOH . 
E 3 HOH A 52 652 117 HOH HOH . 
E 3 HOH A 53 653 118 HOH HOH . 
E 3 HOH A 54 654 119 HOH HOH . 
E 3 HOH A 55 655 120 HOH HOH . 
E 3 HOH A 56 656 124 HOH HOH . 
E 3 HOH A 57 657 126 HOH HOH . 
E 3 HOH A 58 658 127 HOH HOH . 
E 3 HOH A 59 659 129 HOH HOH . 
E 3 HOH A 60 660 130 HOH HOH . 
E 3 HOH A 61 661 134 HOH HOH . 
E 3 HOH A 62 662 136 HOH HOH . 
E 3 HOH A 63 663 140 HOH HOH . 
E 3 HOH A 64 664 141 HOH HOH . 
E 3 HOH A 65 665 144 HOH HOH . 
E 3 HOH A 66 666 147 HOH HOH . 
E 3 HOH A 67 667 148 HOH HOH . 
E 3 HOH A 68 668 149 HOH HOH . 
E 3 HOH A 69 669 155 HOH HOH . 
E 3 HOH A 70 670 41 HOH HOH . 
E 3 HOH A 71 671 65 HOH HOH . 
E 3 HOH A 72 672 75 HOH HOH . 
E 3 HOH A 73 673 91 HOH HOH . 
E 3 HOH A 74 674 111 HOH HOH . 
E 3 HOH A 75 675 123 HOH HOH . 
E 3 HOH A 76 676 128 HOH HOH . 
E 3 HOH A 77 677 131 HOH HOH . 
E 3 HOH A 78 678 132 HOH HOH . 
E 3 HOH A 79 679 137 HOH HOH . 
E 3 HOH A 80 680 142 HOH HOH . 
E 3 HOH A 81 681 154 HOH HOH . 
F 3 HOH B 1 601 4 HOH HOH . 
F 3 HOH B 2 602 6 HOH HOH . 
F 3 HOH B 3 603 7 HOH HOH . 
F 3 HOH B 4 604 9 HOH HOH . 
F 3 HOH B 5 605 11 HOH HOH . 
F 3 HOH B 6 606 12 HOH HOH . 
F 3 HOH B 7 607 13 HOH HOH . 
F 3 HOH B 8 608 15 HOH HOH . 
F 3 HOH B 9 609 17 HOH HOH . 
F 3 HOH B 10 610 20 HOH HOH . 
F 3 HOH B 11 611 25 HOH HOH . 
F 3 HOH B 12 612 28 HOH HOH . 
F 3 HOH B 13 613 29 HOH HOH . 
F 3 HOH B 14 614 30 HOH HOH . 
F 3 HOH B 15 615 31 HOH HOH . 
F 3 HOH B 16 616 32 HOH HOH . 
F 3 HOH B 17 617 34 HOH HOH . 
F 3 HOH B 18 618 35 HOH HOH . 
F 3 HOH B 19 619 36 HOH HOH . 
F 3 HOH B 20 620 43 HOH HOH . 
F 3 HOH B 21 621 45 HOH HOH . 
F 3 HOH B 22 622 46 HOH HOH . 
F 3 HOH B 23 623 48 HOH HOH . 
F 3 HOH B 24 624 49 HOH HOH . 
F 3 HOH B 25 625 50 HOH HOH . 
F 3 HOH B 26 626 52 HOH HOH . 
F 3 HOH B 27 627 54 HOH HOH . 
F 3 HOH B 28 628 57 HOH HOH . 
F 3 HOH B 29 629 58 HOH HOH . 
F 3 HOH B 30 630 60 HOH HOH . 
F 3 HOH B 31 631 61 HOH HOH . 
F 3 HOH B 32 632 62 HOH HOH . 
F 3 HOH B 33 633 63 HOH HOH . 
F 3 HOH B 34 634 64 HOH HOH . 
F 3 HOH B 35 635 68 HOH HOH . 
F 3 HOH B 36 636 69 HOH HOH . 
F 3 HOH B 37 637 70 HOH HOH . 
F 3 HOH B 38 638 73 HOH HOH . 
F 3 HOH B 39 639 74 HOH HOH . 
F 3 HOH B 40 640 79 HOH HOH . 
F 3 HOH B 41 641 83 HOH HOH . 
F 3 HOH B 42 642 87 HOH HOH . 
F 3 HOH B 43 643 93 HOH HOH . 
F 3 HOH B 44 644 94 HOH HOH . 
F 3 HOH B 45 645 95 HOH HOH . 
F 3 HOH B 46 646 97 HOH HOH . 
F 3 HOH B 47 647 100 HOH HOH . 
F 3 HOH B 48 648 102 HOH HOH . 
F 3 HOH B 49 649 103 HOH HOH . 
F 3 HOH B 50 650 104 HOH HOH . 
F 3 HOH B 51 651 108 HOH HOH . 
F 3 HOH B 52 652 109 HOH HOH . 
F 3 HOH B 53 653 113 HOH HOH . 
F 3 HOH B 54 654 121 HOH HOH . 
F 3 HOH B 55 655 122 HOH HOH . 
F 3 HOH B 56 656 125 HOH HOH . 
F 3 HOH B 57 657 133 HOH HOH . 
F 3 HOH B 58 658 138 HOH HOH . 
F 3 HOH B 59 659 145 HOH HOH . 
F 3 HOH B 60 660 146 HOH HOH . 
F 3 HOH B 61 661 152 HOH HOH . 
F 3 HOH B 62 662 153 HOH HOH . 
F 3 HOH B 63 663 2 HOH HOH . 
F 3 HOH B 64 664 14 HOH HOH . 
F 3 HOH B 65 665 37 HOH HOH . 
F 3 HOH B 66 666 67 HOH HOH . 
F 3 HOH B 67 667 86 HOH HOH . 
F 3 HOH B 68 668 92 HOH HOH . 
F 3 HOH B 69 669 135 HOH HOH . 
F 3 HOH B 70 670 139 HOH HOH . 
F 3 HOH B 71 671 143 HOH HOH . 
F 3 HOH B 72 672 151 HOH HOH . 
F 3 HOH B 73 673 156 HOH HOH . 
F 3 HOH B 74 674 157 HOH HOH . 
F 3 HOH B 75 675 158 HOH HOH . 
F 3 HOH B 76 676 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA M7G . . . C 2 -9.943 24.982 -46.354 1 27.54 ? PA M7G 501 A 1 
HETATM 2 O O1A M7G . . . C 2 -10.152 26.454 -46.651 1 20.44 ? O1A M7G 501 A 1 
HETATM 3 O O2A M7G . . . C 2 -9.04 24.16 -47.161 1 23.63 ? O2A M7G 501 A 1 
HETATM 4 O O3A M7G . . . C 2 -11.401 24.24 -46.516 1 27.46 ? O3A M7G 501 A 1 
HETATM 5 O O5' M7G . . . C 2 -9.57 24.721 -44.775 1 23.35 ? O5' M7G 501 A 1 
HETATM 6 P PB M7G . . . C 2 -12.765 24.758 -45.811 1 29.04 ? PB M7G 501 A 1 
HETATM 7 O O1B M7G . . . C 2 -13.092 26.221 -45.845 1 36.59 ? O1B M7G 501 A 1 
HETATM 8 O O2B M7G . . . C 2 -13.826 23.876 -46.428 1 35.4 ? O2B M7G 501 A 1 
HETATM 9 O O3B M7G . . . C 2 -12.807 24.546 -44.224 1 31.03 ? O3B M7G 501 A 1 
HETATM 10 C C5' M7G . . . C 2 -9.298 23.377 -44.375 1 18 ? C5' M7G 501 A 1 
HETATM 11 C C4' M7G . . . C 2 -8.254 23.476 -43.262 1 19.3 ? C4' M7G 501 A 1 
HETATM 12 O O4' M7G . . . C 2 -8.34 22.27 -42.491 1 19.43 ? O4' M7G 501 A 1 
HETATM 13 C C3' M7G . . . C 2 -6.882 23.486 -43.924 1 20.13 ? C3' M7G 501 A 1 
HETATM 14 O O3' M7G . . . C 2 -6.01 24.194 -43.054 1 15.97 ? O3' M7G 501 A 1 
HETATM 15 C C2' M7G . . . C 2 -6.507 22.026 -43.906 1 18.63 ? C2' M7G 501 A 1 
HETATM 16 O O2' M7G . . . C 2 -5.083 21.921 -43.76 1 19.5 ? O2' M7G 501 A 1 
HETATM 17 C C1' M7G . . . C 2 -7.17 21.463 -42.636 1 15.97 ? C1' M7G 501 A 1 
HETATM 18 N N9 M7G . . . C 2 -7.242 19.957 -42.686 1 16.39 ? N9 M7G 501 A 1 
HETATM 19 C C8 M7G . . . C 2 -7.883 18.985 -43.693 1 30.57 ? C8 M7G 501 A 1 
HETATM 20 N N7 M7G . . . C 2 -7.919 17.545 -43.114 1 23.5 ? N7 M7G 501 A 1 
HETATM 21 C CM7 M7G . . . C 2 -8.434 16.672 -43.938 1 10.42 ? CM7 M7G 501 A 1 
HETATM 22 C C5 M7G . . . C 2 -7.781 17.897 -41.742 1 19.97 ? C5 M7G 501 A 1 
HETATM 23 C C6 M7G . . . C 2 -7.959 17.165 -40.497 1 18.96 ? C6 M7G 501 A 1 
HETATM 24 O O6 M7G . . . C 2 -8.269 16.002 -40.599 1 20.97 ? O6 M7G 501 A 1 
HETATM 25 N N1 M7G . . . C 2 -7.789 17.805 -39.288 1 19.79 ? N1 M7G 501 A 1 
HETATM 26 C C2 M7G . . . C 2 -7.402 19.114 -39.159 1 19.31 ? C2 M7G 501 A 1 
HETATM 27 N N2 M7G . . . C 2 -7.216 19.745 -37.955 1 15.75 ? N2 M7G 501 A 1 
HETATM 28 N N3 M7G . . . C 2 -7.227 19.87 -40.27 1 19.54 ? N3 M7G 501 A 1 
HETATM 29 C C4 M7G . . . C 2 -7.437 19.316 -41.499 1 17.71 ? C4 M7G 501 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#