data_4OR7 # _model_server_result.job_id LsE7KPM6dHegNRm24kI9Cw _model_server_result.datetime_utc '2024-11-05 15:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4or7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4OR7 # _exptl.entry_id 4OR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.386 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-{3-[3-(pyrimidin-5-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OR7 _cell.length_a 61.161 _cell.length_b 61.161 _cell.length_c 105.426 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H18 N6' _chem_comp.formula_weight 330.386 _chem_comp.id 25U _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-{3-[3-(pyrimidin-5-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAD C2 25U sing 1 n n C2 N3 25U doub 2 n y C2 N1 25U sing 3 n y N3 C4 25U sing 4 n y CAA CAO 25U sing 5 n n N1 C6 25U doub 6 n y C4 CAO 25U sing 7 n n C4 C5 25U doub 8 n y C6 C5 25U sing 9 n y C6 NAE 25U sing 10 n n C5 CAF 25U sing 11 n n CAF CAG 25U trip 12 n n CAG CBB 25U sing 13 n n CBB CAY 25U sing 14 n n NAO CAJ 25U doub 15 n y NAO CAI 25U sing 16 n y CAN CAY 25U doub 17 n y CAN CAX 25U sing 18 n y CAJ CAW 25U sing 19 n y CAI NAP 25U doub 20 n y CAY CAM 25U sing 21 n y CAW CAX 25U sing 22 n n CAW CAK 25U doub 23 n y NAP CAK 25U sing 24 n y CAX CAL 25U doub 25 n y CAM CAV 25U doub 26 n y CAL CAV 25U sing 27 n y CAA H1 25U sing 28 n n CAA H2 25U sing 29 n n CAA H3 25U sing 30 n n CAO H4 25U sing 31 n n CAO H5 25U sing 32 n n NAD H6 25U sing 33 n n NAD H7 25U sing 34 n n NAE H8 25U sing 35 n n NAE H9 25U sing 36 n n CBB H10 25U sing 37 n n CBB H11 25U sing 38 n n CAN H12 25U sing 39 n n CAM H13 25U sing 40 n n CAV H14 25U sing 41 n n CAL H15 25U sing 42 n n CAJ H16 25U sing 43 n n CAI H17 25U sing 44 n n CAK H18 25U sing 45 n n # _atom_sites.entry_id 4OR7 _atom_sites.fract_transf_matrix[1][1] 0.01635 _atom_sites.fract_transf_matrix[1][2] 0.00944 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 207 NAP NAP . C 3 25U A 1 202 1 25U 25U . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 9 HOH HOH . D 4 HOH A 10 310 10 HOH HOH . D 4 HOH A 11 311 11 HOH HOH . D 4 HOH A 12 312 12 HOH HOH . D 4 HOH A 13 313 13 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 15 HOH HOH . D 4 HOH A 16 316 16 HOH HOH . D 4 HOH A 17 317 17 HOH HOH . D 4 HOH A 18 318 18 HOH HOH . D 4 HOH A 19 319 19 HOH HOH . D 4 HOH A 20 320 20 HOH HOH . D 4 HOH A 21 321 21 HOH HOH . D 4 HOH A 22 322 22 HOH HOH . D 4 HOH A 23 323 23 HOH HOH . D 4 HOH A 24 324 24 HOH HOH . D 4 HOH A 25 325 25 HOH HOH . D 4 HOH A 26 326 26 HOH HOH . D 4 HOH A 27 327 27 HOH HOH . D 4 HOH A 28 328 28 HOH HOH . D 4 HOH A 29 329 29 HOH HOH . D 4 HOH A 30 330 30 HOH HOH . D 4 HOH A 31 331 31 HOH HOH . D 4 HOH A 32 332 32 HOH HOH . D 4 HOH A 33 333 33 HOH HOH . D 4 HOH A 34 334 34 HOH HOH . D 4 HOH A 35 335 35 HOH HOH . D 4 HOH A 36 336 36 HOH HOH . D 4 HOH A 37 337 37 HOH HOH . D 4 HOH A 38 338 38 HOH HOH . D 4 HOH A 39 339 39 HOH HOH . D 4 HOH A 40 340 40 HOH HOH . D 4 HOH A 41 341 41 HOH HOH . D 4 HOH A 42 342 42 HOH HOH . D 4 HOH A 43 343 43 HOH HOH . D 4 HOH A 44 344 44 HOH HOH . D 4 HOH A 45 345 45 HOH HOH . D 4 HOH A 46 346 46 HOH HOH . D 4 HOH A 47 347 47 HOH HOH . D 4 HOH A 48 348 48 HOH HOH . D 4 HOH A 49 349 49 HOH HOH . D 4 HOH A 50 350 50 HOH HOH . D 4 HOH A 51 351 51 HOH HOH . D 4 HOH A 52 352 52 HOH HOH . D 4 HOH A 53 353 53 HOH HOH . D 4 HOH A 54 354 54 HOH HOH . D 4 HOH A 55 355 55 HOH HOH . D 4 HOH A 56 356 56 HOH HOH . D 4 HOH A 57 357 57 HOH HOH . D 4 HOH A 58 358 58 HOH HOH . D 4 HOH A 59 359 59 HOH HOH . D 4 HOH A 60 360 60 HOH HOH . D 4 HOH A 61 361 61 HOH HOH . D 4 HOH A 62 362 62 HOH HOH . D 4 HOH A 63 363 63 HOH HOH . D 4 HOH A 64 364 64 HOH HOH . D 4 HOH A 65 365 65 HOH HOH . D 4 HOH A 66 366 66 HOH HOH . D 4 HOH A 67 367 67 HOH HOH . D 4 HOH A 68 368 68 HOH HOH . D 4 HOH A 69 369 69 HOH HOH . D 4 HOH A 70 370 70 HOH HOH . D 4 HOH A 71 371 71 HOH HOH . D 4 HOH A 72 372 72 HOH HOH . D 4 HOH A 73 373 73 HOH HOH . D 4 HOH A 74 374 74 HOH HOH . D 4 HOH A 75 375 75 HOH HOH . D 4 HOH A 76 376 76 HOH HOH . D 4 HOH A 77 377 77 HOH HOH . D 4 HOH A 78 378 78 HOH HOH . D 4 HOH A 79 379 79 HOH HOH . D 4 HOH A 80 380 80 HOH HOH . D 4 HOH A 81 381 81 HOH HOH . D 4 HOH A 82 382 82 HOH HOH . D 4 HOH A 83 383 83 HOH HOH . D 4 HOH A 84 384 84 HOH HOH . D 4 HOH A 85 385 85 HOH HOH . D 4 HOH A 86 386 86 HOH HOH . D 4 HOH A 87 387 87 HOH HOH . D 4 HOH A 88 388 88 HOH HOH . D 4 HOH A 89 389 89 HOH HOH . D 4 HOH A 90 390 90 HOH HOH . D 4 HOH A 91 391 91 HOH HOH . D 4 HOH A 92 392 92 HOH HOH . D 4 HOH A 93 393 93 HOH HOH . D 4 HOH A 94 394 94 HOH HOH . D 4 HOH A 95 395 95 HOH HOH . D 4 HOH A 96 396 96 HOH HOH . D 4 HOH A 97 397 97 HOH HOH . D 4 HOH A 98 398 98 HOH HOH . D 4 HOH A 99 399 99 HOH HOH . D 4 HOH A 100 400 100 HOH HOH . D 4 HOH A 101 401 101 HOH HOH . D 4 HOH A 102 402 102 HOH HOH . D 4 HOH A 103 403 103 HOH HOH . D 4 HOH A 104 404 104 HOH HOH . D 4 HOH A 105 405 105 HOH HOH . D 4 HOH A 106 406 106 HOH HOH . D 4 HOH A 107 407 107 HOH HOH . D 4 HOH A 108 408 108 HOH HOH . D 4 HOH A 109 409 109 HOH HOH . D 4 HOH A 110 410 110 HOH HOH . D 4 HOH A 111 411 111 HOH HOH . D 4 HOH A 112 412 112 HOH HOH . D 4 HOH A 113 413 113 HOH HOH . D 4 HOH A 114 414 114 HOH HOH . D 4 HOH A 115 415 115 HOH HOH . D 4 HOH A 116 416 116 HOH HOH . D 4 HOH A 117 417 117 HOH HOH . D 4 HOH A 118 418 118 HOH HOH . D 4 HOH A 119 419 119 HOH HOH . D 4 HOH A 120 420 120 HOH HOH . D 4 HOH A 121 421 121 HOH HOH . D 4 HOH A 122 422 122 HOH HOH . D 4 HOH A 123 423 123 HOH HOH . D 4 HOH A 124 424 124 HOH HOH . D 4 HOH A 125 425 125 HOH HOH . D 4 HOH A 126 426 126 HOH HOH . D 4 HOH A 127 427 127 HOH HOH . D 4 HOH A 128 428 128 HOH HOH . D 4 HOH A 129 429 129 HOH HOH . D 4 HOH A 130 430 130 HOH HOH . D 4 HOH A 131 431 131 HOH HOH . D 4 HOH A 132 432 132 HOH HOH . D 4 HOH A 133 433 134 HOH HOH . D 4 HOH A 134 434 135 HOH HOH . D 4 HOH A 135 435 136 HOH HOH . D 4 HOH A 136 436 137 HOH HOH . D 4 HOH A 137 437 138 HOH HOH . D 4 HOH A 138 438 139 HOH HOH . D 4 HOH A 139 439 140 HOH HOH . D 4 HOH A 140 440 141 HOH HOH . D 4 HOH A 141 441 142 HOH HOH . D 4 HOH A 142 442 143 HOH HOH . D 4 HOH A 143 443 144 HOH HOH . D 4 HOH A 144 444 145 HOH HOH . D 4 HOH A 145 445 147 HOH HOH . D 4 HOH A 146 446 148 HOH HOH . D 4 HOH A 147 447 149 HOH HOH . D 4 HOH A 148 448 150 HOH HOH . D 4 HOH A 149 449 151 HOH HOH . D 4 HOH A 150 450 152 HOH HOH . D 4 HOH A 151 451 153 HOH HOH . D 4 HOH A 152 452 154 HOH HOH . D 4 HOH A 153 453 156 HOH HOH . D 4 HOH A 154 454 157 HOH HOH . D 4 HOH A 155 455 159 HOH HOH . D 4 HOH A 156 456 160 HOH HOH . D 4 HOH A 157 457 161 HOH HOH . D 4 HOH A 158 458 162 HOH HOH . D 4 HOH A 159 459 163 HOH HOH . D 4 HOH A 160 460 164 HOH HOH . D 4 HOH A 161 461 165 HOH HOH . D 4 HOH A 162 462 166 HOH HOH . D 4 HOH A 163 463 167 HOH HOH . D 4 HOH A 164 464 168 HOH HOH . D 4 HOH A 165 465 169 HOH HOH . D 4 HOH A 166 466 170 HOH HOH . D 4 HOH A 167 467 171 HOH HOH . D 4 HOH A 168 468 172 HOH HOH . D 4 HOH A 169 469 173 HOH HOH . D 4 HOH A 170 470 174 HOH HOH . D 4 HOH A 171 471 175 HOH HOH . D 4 HOH A 172 472 176 HOH HOH . D 4 HOH A 173 473 177 HOH HOH . D 4 HOH A 174 474 178 HOH HOH . D 4 HOH A 175 475 179 HOH HOH . D 4 HOH A 176 476 180 HOH HOH . D 4 HOH A 177 477 181 HOH HOH . D 4 HOH A 178 478 182 HOH HOH . D 4 HOH A 179 479 183 HOH HOH . D 4 HOH A 180 480 184 HOH HOH . D 4 HOH A 181 481 185 HOH HOH . D 4 HOH A 182 482 186 HOH HOH . D 4 HOH A 183 483 187 HOH HOH . D 4 HOH A 184 484 188 HOH HOH . D 4 HOH A 185 485 189 HOH HOH . D 4 HOH A 186 486 190 HOH HOH . D 4 HOH A 187 487 191 HOH HOH . D 4 HOH A 188 488 192 HOH HOH . D 4 HOH A 189 489 193 HOH HOH . D 4 HOH A 190 490 194 HOH HOH . D 4 HOH A 191 491 195 HOH HOH . D 4 HOH A 192 492 196 HOH HOH . D 4 HOH A 193 493 197 HOH HOH . D 4 HOH A 194 494 198 HOH HOH . D 4 HOH A 195 495 199 HOH HOH . D 4 HOH A 196 496 200 HOH HOH . D 4 HOH A 197 497 201 HOH HOH . D 4 HOH A 198 498 202 HOH HOH . D 4 HOH A 199 499 203 HOH HOH . D 4 HOH A 200 500 204 HOH HOH . D 4 HOH A 201 501 205 HOH HOH . D 4 HOH A 202 502 206 HOH HOH . D 4 HOH A 203 503 207 HOH HOH . D 4 HOH A 204 504 208 HOH HOH . D 4 HOH A 205 505 209 HOH HOH . D 4 HOH A 206 506 210 HOH HOH . D 4 HOH A 207 507 211 HOH HOH . D 4 HOH A 208 508 212 HOH HOH . D 4 HOH A 209 509 214 HOH HOH . D 4 HOH A 210 510 215 HOH HOH . D 4 HOH A 211 511 216 HOH HOH . D 4 HOH A 212 512 217 HOH HOH . D 4 HOH A 213 513 219 HOH HOH . D 4 HOH A 214 514 220 HOH HOH . D 4 HOH A 215 515 221 HOH HOH . D 4 HOH A 216 516 222 HOH HOH . D 4 HOH A 217 517 223 HOH HOH . D 4 HOH A 218 518 224 HOH HOH . D 4 HOH A 219 519 225 HOH HOH . D 4 HOH A 220 520 226 HOH HOH . D 4 HOH A 221 521 227 HOH HOH . D 4 HOH A 222 522 228 HOH HOH . D 4 HOH A 223 523 229 HOH HOH . D 4 HOH A 224 524 230 HOH HOH . D 4 HOH A 225 525 231 HOH HOH . D 4 HOH A 226 526 232 HOH HOH . D 4 HOH A 227 527 233 HOH HOH . D 4 HOH A 228 528 234 HOH HOH . D 4 HOH A 229 529 235 HOH HOH . D 4 HOH A 230 530 236 HOH HOH . D 4 HOH A 231 531 237 HOH HOH . D 4 HOH A 232 532 238 HOH HOH . D 4 HOH A 233 533 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 25U . . . C 3 55.834 27.541 20.029 1 18.08 ? CAA 25U 202 A 1 HETATM 2 C CAO 25U . . . C 3 54.328 27.748 19.866 1 17.37 ? CAO 25U 202 A 1 HETATM 3 C C4 25U . . . C 3 53.68 26.519 19.816 1 23.24 ? C4 25U 202 A 1 HETATM 4 N N3 25U . . . C 3 53.637 25.741 20.904 1 20.51 ? N3 25U 202 A 1 HETATM 5 C C2 25U . . . C 3 53.018 24.549 20.876 1 15 ? C2 25U 202 A 1 HETATM 6 N NAD 25U . . . C 3 53.008 23.809 21.967 1 7.96 ? NAD 25U 202 A 1 HETATM 7 N N1 25U . . . C 3 52.414 24.098 19.761 1 15.35 ? N1 25U 202 A 1 HETATM 8 C C6 25U . . . C 3 52.431 24.841 18.651 1 13 ? C6 25U 202 A 1 HETATM 9 N NAE 25U . . . C 3 51.87 24.436 17.506 1 11.48 ? NAE 25U 202 A 1 HETATM 10 C C5 25U . . . C 3 53.071 26.073 18.647 1 25.95 ? C5 25U 202 A 1 HETATM 11 C CAF 25U . . . C 3 53.101 26.857 17.491 1 25.71 ? CAF 25U 202 A 1 HETATM 12 C CAG 25U . . . C 3 53.133 27.484 16.59 1 23.05 ? CAG 25U 202 A 1 HETATM 13 C CBB 25U . . . C 3 53.167 28.318 15.411 1 24.13 ? CBB 25U 202 A 1 HETATM 14 C CAY 25U . . . C 3 54.086 29.357 15.561 1 33.84 ? CAY 25U 202 A 1 HETATM 15 C CAN 25U . . . C 3 55.421 29.084 15.853 1 20.88 ? CAN 25U 202 A 1 HETATM 16 C CAM 25U . . . C 3 53.664 30.674 15.409 1 32.63 ? CAM 25U 202 A 1 HETATM 17 C CAV 25U . . . C 3 54.569 31.722 15.545 1 39.65 ? CAV 25U 202 A 1 HETATM 18 C CAL 25U . . . C 3 55.903 31.446 15.832 1 35.85 ? CAL 25U 202 A 1 HETATM 19 C CAX 25U . . . C 3 56.334 30.128 15.974 1 34.5 ? CAX 25U 202 A 1 HETATM 20 C CAW 25U . . . C 3 57.669 29.848 16.266 1 34.87 ? CAW 25U 202 A 1 HETATM 21 C CAJ 25U . . . C 3 58.079 28.533 16.481 1 38.28 ? CAJ 25U 202 A 1 HETATM 22 N NAO 25U . . . C 3 59.425 28.239 16.758 1 36.52 ? NAO 25U 202 A 1 HETATM 23 C CAI 25U . . . C 3 60.375 29.271 16.79 1 35.08 ? CAI 25U 202 A 1 HETATM 24 N NAP 25U . . . C 3 59.965 30.589 16.551 1 48.37 ? NAP 25U 202 A 1 HETATM 25 C CAK 25U . . . C 3 58.613 30.87 16.281 1 54.72 ? CAK 25U 202 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #