data_4ORC # _model_server_result.job_id 9q_4P6VDUX_S39qQdRiC-w _model_server_result.datetime_utc '2024-11-05 01:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4orc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 4ORC # _exptl.entry_id 4ORC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ORC _cell.length_a 110.2 _cell.length_b 110.2 _cell.length_c 282.488 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ORC _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 119 A ASP 99 1_555 D FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A NE2 HIS 121 A HIS 101 1_555 D FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A OD2 ASP 147 A ASP 127 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 A OD2 ASP 147 A ASP 127 1_555 D FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc5 A OD1 ASN 179 A ASN 159 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 A NE2 HIS 228 A HIS 208 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 A ND1 HIS 310 A HIS 290 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc8 C ZN ZN . A ZN 601 1_555 E O4 PO4 . A PO4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc9 D FE FE . A FE 602 1_555 E O1 PO4 . A PO4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc10 B OD1 ASP 31 B ASP 30 1_555 F CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc11 B OD1 ASP 33 B ASP 32 1_555 F CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc12 B OG SER 35 B SER 34 1_555 F CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc13 B O SER 37 B SER 36 1_555 F CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc14 B OE2 GLU 42 B GLU 41 1_555 F CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc15 B OE1 GLU 42 B GLU 41 1_555 F CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc16 B OD1 ASP 63 B ASP 62 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc17 B OD1 ASP 65 B ASP 64 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc18 B OD2 ASP 65 B ASP 64 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? metalc ? metalc19 B O GLU 69 B GLU 68 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc20 B OE1 GLU 74 B GLU 73 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc21 B OE2 GLU 74 B GLU 73 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc22 B OD1 ASP 100 B ASP 99 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc23 B OD1 ASP 102 B ASP 101 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc24 B OD1 ASP 104 B ASP 103 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc25 B O TYR 106 B TYR 105 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc26 B OE2 GLU 111 B GLU 110 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc27 B OE1 GLU 111 B GLU 110 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc28 B OD1 ASP 141 B ASP 140 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc29 B OD1 ASP 143 B ASP 142 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc30 B OD1 ASP 145 B ASP 144 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc31 B O ARG 147 B ARG 146 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc32 B OE1 GLU 152 B GLU 151 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc33 B OE2 GLU 152 B GLU 151 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc34 H CA CA . B CA 502 1_555 K O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ORC _atom_sites.fract_transf_matrix[1][1] 0.009074 _atom_sites.fract_transf_matrix[1][2] 0.005239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 601 522 ZN ZN . D 4 FE A 1 602 523 FE FE . E 5 PO4 A 1 603 624 PO4 PO4 . F 6 CA B 1 500 500 CA CA . G 6 CA B 1 501 501 CA CA . H 6 CA B 1 502 502 CA CA . I 6 CA B 1 503 503 CA CA . J 7 HOH A 1 701 1 HOH HOH . J 7 HOH A 2 702 2 HOH HOH . J 7 HOH A 3 703 3 HOH HOH . J 7 HOH A 4 704 4 HOH HOH . J 7 HOH A 5 705 5 HOH HOH . J 7 HOH A 6 706 6 HOH HOH . J 7 HOH A 7 707 7 HOH HOH . J 7 HOH A 8 708 8 HOH HOH . J 7 HOH A 9 709 9 HOH HOH . J 7 HOH A 10 710 10 HOH HOH . J 7 HOH A 11 711 12 HOH HOH . J 7 HOH A 12 712 13 HOH HOH . J 7 HOH A 13 713 14 HOH HOH . J 7 HOH A 14 714 15 HOH HOH . J 7 HOH A 15 715 16 HOH HOH . J 7 HOH A 16 716 17 HOH HOH . J 7 HOH A 17 717 18 HOH HOH . J 7 HOH A 18 718 21 HOH HOH . J 7 HOH A 19 719 22 HOH HOH . J 7 HOH A 20 720 23 HOH HOH . J 7 HOH A 21 721 24 HOH HOH . J 7 HOH A 22 722 25 HOH HOH . J 7 HOH A 23 723 26 HOH HOH . J 7 HOH A 24 724 29 HOH HOH . J 7 HOH A 25 725 30 HOH HOH . J 7 HOH A 26 726 31 HOH HOH . J 7 HOH A 27 727 32 HOH HOH . J 7 HOH A 28 728 33 HOH HOH . J 7 HOH A 29 729 34 HOH HOH . J 7 HOH A 30 730 35 HOH HOH . J 7 HOH A 31 731 36 HOH HOH . J 7 HOH A 32 732 37 HOH HOH . J 7 HOH A 33 733 38 HOH HOH . J 7 HOH A 34 734 39 HOH HOH . J 7 HOH A 35 735 40 HOH HOH . J 7 HOH A 36 736 41 HOH HOH . J 7 HOH A 37 737 42 HOH HOH . K 7 HOH B 1 601 11 HOH HOH . K 7 HOH B 2 602 19 HOH HOH . K 7 HOH B 3 603 20 HOH HOH . K 7 HOH B 4 604 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 31.079 _atom_site.Cartn_y -74.863 _atom_site.Cartn_z -28.479 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #