data_4ORI # _model_server_result.job_id 0N4jtJwz3ftRYwfCj8cAQA _model_server_result.datetime_utc '2024-11-20 09:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ori # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4ORI # _exptl.entry_id 4ORI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.96 _cell.angle_gamma 90 _cell.entry_id 4ORI _cell.length_a 124.365 _cell.length_b 43.845 _cell.length_c 63.305 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ORI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 106 n n N1 C10 FMN doub 107 n n C2 O2 FMN doub 108 n n C2 N3 FMN sing 109 n n N3 C4 FMN sing 110 n n N3 HN3 FMN sing 111 n n C4 O4 FMN doub 112 n n C4 C4A FMN sing 113 n n C4A N5 FMN doub 114 n n C4A C10 FMN sing 115 n n N5 C5A FMN sing 116 n n C5A C6 FMN doub 117 n y C5A C9A FMN sing 118 n y C6 C7 FMN sing 119 n y C6 H6 FMN sing 120 n n C7 C7M FMN sing 121 n n C7 C8 FMN doub 122 n y C7M HM71 FMN sing 123 n n C7M HM72 FMN sing 124 n n C7M HM73 FMN sing 125 n n C8 C8M FMN sing 126 n n C8 C9 FMN sing 127 n y C8M HM81 FMN sing 128 n n C8M HM82 FMN sing 129 n n C8M HM83 FMN sing 130 n n C9 C9A FMN doub 131 n y C9 H9 FMN sing 132 n n C9A N10 FMN sing 133 n n N10 C10 FMN sing 134 n n N10 C1' FMN sing 135 n n C1' C2' FMN sing 136 n n C1' "H1'1" FMN sing 137 n n C1' "H1'2" FMN sing 138 n n C2' O2' FMN sing 139 n n C2' C3' FMN sing 140 n n C2' H2' FMN sing 141 n n O2' HO2' FMN sing 142 n n C3' O3' FMN sing 143 n n C3' C4' FMN sing 144 n n C3' H3' FMN sing 145 n n O3' HO3' FMN sing 146 n n C4' O4' FMN sing 147 n n C4' C5' FMN sing 148 n n C4' H4' FMN sing 149 n n O4' HO4' FMN sing 150 n n C5' O5' FMN sing 151 n n C5' "H5'1" FMN sing 152 n n C5' "H5'2" FMN sing 153 n n O5' P FMN sing 154 n n P O1P FMN doub 155 n n P O2P FMN sing 156 n n P O3P FMN sing 157 n n O2P HOP2 FMN sing 158 n n O3P HOP3 FMN sing 159 n n # _atom_sites.entry_id 4ORI _atom_sites.fract_transf_matrix[1][1] 0.008041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 500 500 FMN FMN . C 3 ORO A 1 501 501 ORO ORO . D 4 2V6 A 1 502 502 2V6 D38 . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 6 HOH HOH . E 5 HOH A 7 607 7 HOH HOH . E 5 HOH A 8 608 8 HOH HOH . E 5 HOH A 9 609 9 HOH HOH . E 5 HOH A 10 610 10 HOH HOH . E 5 HOH A 11 611 11 HOH HOH . E 5 HOH A 12 612 12 HOH HOH . E 5 HOH A 13 613 13 HOH HOH . E 5 HOH A 14 614 14 HOH HOH . E 5 HOH A 15 615 15 HOH HOH . E 5 HOH A 16 616 16 HOH HOH . E 5 HOH A 17 617 17 HOH HOH . E 5 HOH A 18 618 18 HOH HOH . E 5 HOH A 19 619 19 HOH HOH . E 5 HOH A 20 620 20 HOH HOH . E 5 HOH A 21 621 21 HOH HOH . E 5 HOH A 22 622 22 HOH HOH . E 5 HOH A 23 623 23 HOH HOH . E 5 HOH A 24 624 24 HOH HOH . E 5 HOH A 25 625 25 HOH HOH . E 5 HOH A 26 626 26 HOH HOH . E 5 HOH A 27 627 27 HOH HOH . E 5 HOH A 28 628 28 HOH HOH . E 5 HOH A 29 629 29 HOH HOH . E 5 HOH A 30 630 30 HOH HOH . E 5 HOH A 31 631 31 HOH HOH . E 5 HOH A 32 632 32 HOH HOH . E 5 HOH A 33 633 33 HOH HOH . E 5 HOH A 34 634 34 HOH HOH . E 5 HOH A 35 635 35 HOH HOH . E 5 HOH A 36 636 37 HOH HOH . E 5 HOH A 37 637 38 HOH HOH . E 5 HOH A 38 638 39 HOH HOH . E 5 HOH A 39 639 40 HOH HOH . E 5 HOH A 40 640 41 HOH HOH . E 5 HOH A 41 641 42 HOH HOH . E 5 HOH A 42 642 43 HOH HOH . E 5 HOH A 43 643 45 HOH HOH . E 5 HOH A 44 644 46 HOH HOH . E 5 HOH A 45 645 49 HOH HOH . E 5 HOH A 46 646 50 HOH HOH . E 5 HOH A 47 647 51 HOH HOH . E 5 HOH A 48 648 52 HOH HOH . E 5 HOH A 49 649 53 HOH HOH . E 5 HOH A 50 650 54 HOH HOH . E 5 HOH A 51 651 55 HOH HOH . E 5 HOH A 52 652 56 HOH HOH . E 5 HOH A 53 653 58 HOH HOH . E 5 HOH A 54 654 59 HOH HOH . E 5 HOH A 55 655 60 HOH HOH . E 5 HOH A 56 656 61 HOH HOH . E 5 HOH A 57 657 63 HOH HOH . E 5 HOH A 58 658 64 HOH HOH . E 5 HOH A 59 659 65 HOH HOH . E 5 HOH A 60 660 66 HOH HOH . E 5 HOH A 61 661 67 HOH HOH . E 5 HOH A 62 662 68 HOH HOH . E 5 HOH A 63 663 69 HOH HOH . E 5 HOH A 64 664 72 HOH HOH . E 5 HOH A 65 665 73 HOH HOH . E 5 HOH A 66 666 75 HOH HOH . E 5 HOH A 67 667 76 HOH HOH . E 5 HOH A 68 668 78 HOH HOH . E 5 HOH A 69 669 79 HOH HOH . E 5 HOH A 70 670 80 HOH HOH . E 5 HOH A 71 671 81 HOH HOH . E 5 HOH A 72 672 82 HOH HOH . E 5 HOH A 73 673 83 HOH HOH . E 5 HOH A 74 674 84 HOH HOH . E 5 HOH A 75 675 85 HOH HOH . E 5 HOH A 76 676 86 HOH HOH . E 5 HOH A 77 677 87 HOH HOH . E 5 HOH A 78 678 89 HOH HOH . E 5 HOH A 79 679 90 HOH HOH . E 5 HOH A 80 680 91 HOH HOH . E 5 HOH A 81 681 93 HOH HOH . E 5 HOH A 82 682 94 HOH HOH . E 5 HOH A 83 683 96 HOH HOH . E 5 HOH A 84 684 97 HOH HOH . E 5 HOH A 85 685 98 HOH HOH . E 5 HOH A 86 686 100 HOH HOH . E 5 HOH A 87 687 101 HOH HOH . E 5 HOH A 88 688 102 HOH HOH . E 5 HOH A 89 689 103 HOH HOH . E 5 HOH A 90 690 107 HOH HOH . E 5 HOH A 91 691 111 HOH HOH . E 5 HOH A 92 692 112 HOH HOH . E 5 HOH A 93 693 113 HOH HOH . E 5 HOH A 94 694 114 HOH HOH . E 5 HOH A 95 695 115 HOH HOH . E 5 HOH A 96 696 116 HOH HOH . E 5 HOH A 97 697 117 HOH HOH . E 5 HOH A 98 698 118 HOH HOH . E 5 HOH A 99 699 119 HOH HOH . E 5 HOH A 100 700 120 HOH HOH . E 5 HOH A 101 701 121 HOH HOH . E 5 HOH A 102 702 123 HOH HOH . E 5 HOH A 103 703 124 HOH HOH . E 5 HOH A 104 704 125 HOH HOH . E 5 HOH A 105 705 126 HOH HOH . E 5 HOH A 106 706 127 HOH HOH . E 5 HOH A 107 707 128 HOH HOH . E 5 HOH A 108 708 129 HOH HOH . E 5 HOH A 109 709 130 HOH HOH . E 5 HOH A 110 710 131 HOH HOH . E 5 HOH A 111 711 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -16.254 -14.603 14.048 1 20.55 ? N1 FMN 500 A 1 HETATM 2 C C2 FMN . . . B 2 -17.396 -14.367 13.426 1 23.03 ? C2 FMN 500 A 1 HETATM 3 O O2 FMN . . . B 2 -18.38 -14.345 14.114 1 23.94 ? O2 FMN 500 A 1 HETATM 4 N N3 FMN . . . B 2 -17.461 -14.186 12.108 1 23.85 ? N3 FMN 500 A 1 HETATM 5 C C4 FMN . . . B 2 -16.41 -14.232 11.343 1 23.93 ? C4 FMN 500 A 1 HETATM 6 O O4 FMN . . . B 2 -16.453 -14.056 10.148 1 25.58 ? O4 FMN 500 A 1 HETATM 7 C C4A FMN . . . B 2 -15.11 -14.477 11.956 1 22.47 ? C4A FMN 500 A 1 HETATM 8 N N5 FMN . . . B 2 -13.99 -14.517 11.265 1 22.5 ? N5 FMN 500 A 1 HETATM 9 C C5A FMN . . . B 2 -12.826 -14.802 11.845 1 22.29 ? C5A FMN 500 A 1 HETATM 10 C C6 FMN . . . B 2 -11.674 -14.889 11.128 1 23.75 ? C6 FMN 500 A 1 HETATM 11 C C7 FMN . . . B 2 -10.479 -15.157 11.731 1 26.02 ? C7 FMN 500 A 1 HETATM 12 C C7M FMN . . . B 2 -9.205 -15.238 10.963 1 25.84 ? C7M FMN 500 A 1 HETATM 13 C C8 FMN . . . B 2 -10.454 -15.376 13.172 1 22.45 ? C8 FMN 500 A 1 HETATM 14 C C8M FMN . . . B 2 -9.159 -15.675 13.852 1 27.42 ? C8M FMN 500 A 1 HETATM 15 C C9 FMN . . . B 2 -11.594 -15.311 13.89 1 21.96 ? C9 FMN 500 A 1 HETATM 16 C C9A FMN . . . B 2 -12.788 -15.009 13.296 1 20.19 ? C9A FMN 500 A 1 HETATM 17 N N10 FMN . . . B 2 -13.947 -14.951 14.026 1 20.61 ? N10 FMN 500 A 1 HETATM 18 C C10 FMN . . . B 2 -15.132 -14.681 13.388 1 19.24 ? C10 FMN 500 A 1 HETATM 19 C C1' FMN . . . B 2 -13.958 -15.115 15.465 1 21.81 ? C1' FMN 500 A 1 HETATM 20 C C2' FMN . . . B 2 -13.962 -16.556 15.894 1 20.54 ? C2' FMN 500 A 1 HETATM 21 O O2' FMN . . . B 2 -15.194 -17.106 15.554 1 20.46 ? O2' FMN 500 A 1 HETATM 22 C C3' FMN . . . B 2 -13.803 -16.682 17.398 1 18.42 ? C3' FMN 500 A 1 HETATM 23 O O3' FMN . . . B 2 -14.857 -15.988 18.039 1 20.27 ? O3' FMN 500 A 1 HETATM 24 C C4' FMN . . . B 2 -12.481 -16.137 17.9 1 18.8 ? C4' FMN 500 A 1 HETATM 25 O O4' FMN . . . B 2 -11.473 -16.327 16.965 1 19.35 ? O4' FMN 500 A 1 HETATM 26 C C5' FMN . . . B 2 -12.082 -16.787 19.222 1 18.25 ? C5' FMN 500 A 1 HETATM 27 O O5' FMN . . . B 2 -11.866 -18.171 19.158 1 18.47 ? O5' FMN 500 A 1 HETATM 28 P P FMN . . . B 2 -10.428 -18.809 18.925 1 19 ? P FMN 500 A 1 HETATM 29 O O1P FMN . . . B 2 -9.58 -18.144 19.895 1 18.53 ? O1P FMN 500 A 1 HETATM 30 O O2P FMN . . . B 2 -10.022 -18.464 17.577 1 18.01 ? O2P FMN 500 A 1 HETATM 31 O O3P FMN . . . B 2 -10.625 -20.235 19.177 1 16.99 ? O3P FMN 500 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #