data_4ORM # _model_server_result.job_id JER169SNJ4KVvglFgdyWBw _model_server_result.datetime_utc '2024-11-25 06:41:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4orm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 4ORM # _exptl.entry_id 4ORM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ORM _cell.length_a 85.471 _cell.length_b 85.471 _cell.length_c 138.275 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ORM _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 340 n y N1 C6 ORO sing 341 n y N1 HN1 ORO sing 342 n n C2 O2 ORO doub 343 n n C2 N3 ORO sing 344 n y N3 C4 ORO sing 345 n y N3 HN3 ORO sing 346 n n C4 O4 ORO doub 347 n n C4 C5 ORO sing 348 n y C5 C6 ORO doub 349 n y C5 H5 ORO sing 350 n n C6 C7 ORO sing 351 n n C7 O71 ORO doub 352 n n C7 O72 ORO sing 353 n n O72 HO7 ORO sing 354 n n # _atom_sites.entry_id 4ORM _atom_sites.fract_transf_matrix[1][1] 0.0117 _atom_sites.fract_transf_matrix[1][2] 0.006755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2V6 A 1 1001 1001 2V6 D38 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1004 GOL GOL . F 6 SO4 A 1 1005 1005 SO4 SO4 . G 6 SO4 A 1 1006 1006 SO4 SO4 . H 7 HOH A 1 1101 1 HOH HOH . H 7 HOH A 2 1102 2 HOH HOH . H 7 HOH A 3 1103 3 HOH HOH . H 7 HOH A 4 1104 4 HOH HOH . H 7 HOH A 5 1105 5 HOH HOH . H 7 HOH A 6 1106 6 HOH HOH . H 7 HOH A 7 1107 7 HOH HOH . H 7 HOH A 8 1108 8 HOH HOH . H 7 HOH A 9 1109 9 HOH HOH . H 7 HOH A 10 1110 10 HOH HOH . H 7 HOH A 11 1111 11 HOH HOH . H 7 HOH A 12 1112 12 HOH HOH . H 7 HOH A 13 1113 13 HOH HOH . H 7 HOH A 14 1114 14 HOH HOH . H 7 HOH A 15 1115 15 HOH HOH . H 7 HOH A 16 1116 16 HOH HOH . H 7 HOH A 17 1117 17 HOH HOH . H 7 HOH A 18 1118 18 HOH HOH . H 7 HOH A 19 1119 19 HOH HOH . H 7 HOH A 20 1120 20 HOH HOH . H 7 HOH A 21 1121 21 HOH HOH . H 7 HOH A 22 1122 22 HOH HOH . H 7 HOH A 23 1123 23 HOH HOH . H 7 HOH A 24 1124 24 HOH HOH . H 7 HOH A 25 1125 25 HOH HOH . H 7 HOH A 26 1126 26 HOH HOH . H 7 HOH A 27 1127 27 HOH HOH . H 7 HOH A 28 1128 28 HOH HOH . H 7 HOH A 29 1129 29 HOH HOH . H 7 HOH A 30 1130 30 HOH HOH . H 7 HOH A 31 1131 31 HOH HOH . H 7 HOH A 32 1132 32 HOH HOH . H 7 HOH A 33 1133 33 HOH HOH . H 7 HOH A 34 1134 34 HOH HOH . H 7 HOH A 35 1135 35 HOH HOH . H 7 HOH A 36 1136 36 HOH HOH . H 7 HOH A 37 1137 37 HOH HOH . H 7 HOH A 38 1138 38 HOH HOH . H 7 HOH A 39 1139 39 HOH HOH . H 7 HOH A 40 1140 40 HOH HOH . H 7 HOH A 41 1141 41 HOH HOH . H 7 HOH A 42 1142 42 HOH HOH . H 7 HOH A 43 1143 43 HOH HOH . H 7 HOH A 44 1144 44 HOH HOH . H 7 HOH A 45 1145 45 HOH HOH . H 7 HOH A 46 1146 46 HOH HOH . H 7 HOH A 47 1147 47 HOH HOH . H 7 HOH A 48 1148 48 HOH HOH . H 7 HOH A 49 1149 49 HOH HOH . H 7 HOH A 50 1150 50 HOH HOH . H 7 HOH A 51 1151 51 HOH HOH . H 7 HOH A 52 1152 52 HOH HOH . H 7 HOH A 53 1153 53 HOH HOH . H 7 HOH A 54 1154 54 HOH HOH . H 7 HOH A 55 1155 55 HOH HOH . H 7 HOH A 56 1156 56 HOH HOH . H 7 HOH A 57 1157 57 HOH HOH . H 7 HOH A 58 1158 58 HOH HOH . H 7 HOH A 59 1159 59 HOH HOH . H 7 HOH A 60 1160 60 HOH HOH . H 7 HOH A 61 1161 61 HOH HOH . H 7 HOH A 62 1162 62 HOH HOH . H 7 HOH A 63 1163 65 HOH HOH . H 7 HOH A 64 1164 66 HOH HOH . H 7 HOH A 65 1165 67 HOH HOH . H 7 HOH A 66 1166 68 HOH HOH . H 7 HOH A 67 1167 69 HOH HOH . H 7 HOH A 68 1168 70 HOH HOH . H 7 HOH A 69 1169 71 HOH HOH . H 7 HOH A 70 1170 72 HOH HOH . H 7 HOH A 71 1171 73 HOH HOH . H 7 HOH A 72 1172 74 HOH HOH . H 7 HOH A 73 1173 75 HOH HOH . H 7 HOH A 74 1174 76 HOH HOH . H 7 HOH A 75 1175 77 HOH HOH . H 7 HOH A 76 1176 78 HOH HOH . H 7 HOH A 77 1177 79 HOH HOH . H 7 HOH A 78 1178 80 HOH HOH . H 7 HOH A 79 1179 81 HOH HOH . H 7 HOH A 80 1180 82 HOH HOH . H 7 HOH A 81 1181 83 HOH HOH . H 7 HOH A 82 1182 85 HOH HOH . H 7 HOH A 83 1183 86 HOH HOH . H 7 HOH A 84 1184 88 HOH HOH . H 7 HOH A 85 1185 89 HOH HOH . H 7 HOH A 86 1186 90 HOH HOH . H 7 HOH A 87 1187 91 HOH HOH . H 7 HOH A 88 1188 92 HOH HOH . H 7 HOH A 89 1189 93 HOH HOH . H 7 HOH A 90 1190 94 HOH HOH . H 7 HOH A 91 1191 95 HOH HOH . H 7 HOH A 92 1192 96 HOH HOH . H 7 HOH A 93 1193 97 HOH HOH . H 7 HOH A 94 1194 98 HOH HOH . H 7 HOH A 95 1195 99 HOH HOH . H 7 HOH A 96 1196 100 HOH HOH . H 7 HOH A 97 1197 101 HOH HOH . H 7 HOH A 98 1198 102 HOH HOH . H 7 HOH A 99 1199 103 HOH HOH . H 7 HOH A 100 1200 104 HOH HOH . H 7 HOH A 101 1201 105 HOH HOH . H 7 HOH A 102 1202 106 HOH HOH . H 7 HOH A 103 1203 107 HOH HOH . H 7 HOH A 104 1204 108 HOH HOH . H 7 HOH A 105 1205 109 HOH HOH . H 7 HOH A 106 1206 110 HOH HOH . H 7 HOH A 107 1207 111 HOH HOH . H 7 HOH A 108 1208 112 HOH HOH . H 7 HOH A 109 1209 113 HOH HOH . H 7 HOH A 110 1210 114 HOH HOH . H 7 HOH A 111 1211 115 HOH HOH . H 7 HOH A 112 1212 116 HOH HOH . H 7 HOH A 113 1213 117 HOH HOH . H 7 HOH A 114 1214 119 HOH HOH . H 7 HOH A 115 1215 120 HOH HOH . H 7 HOH A 116 1216 121 HOH HOH . H 7 HOH A 117 1217 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . D 4 -5.608 18.888 -8.993 1 39.54 ? N1 ORO 1003 A 1 HETATM 2 C C2 ORO . . . D 4 -6.121 19.765 -8.095 1 42.73 ? C2 ORO 1003 A 1 HETATM 3 O O2 ORO . . . D 4 -6.851 20.703 -8.483 1 45.11 ? O2 ORO 1003 A 1 HETATM 4 N N3 ORO . . . D 4 -5.923 19.661 -6.73 1 39.43 ? N3 ORO 1003 A 1 HETATM 5 C C4 ORO . . . D 4 -5.158 18.633 -6.266 1 42.12 ? C4 ORO 1003 A 1 HETATM 6 O O4 ORO . . . D 4 -4.995 18.503 -5.037 1 40.14 ? O4 ORO 1003 A 1 HETATM 7 C C5 ORO . . . D 4 -4.578 17.736 -7.138 1 40.23 ? C5 ORO 1003 A 1 HETATM 8 C C6 ORO . . . D 4 -4.795 17.883 -8.542 1 45.91 ? C6 ORO 1003 A 1 HETATM 9 C C7 ORO . . . D 4 -4.294 16.829 -9.487 1 45.99 ? C7 ORO 1003 A 1 HETATM 10 O O71 ORO . . . D 4 -3.21 16.181 -9.414 1 41.64 ? O71 ORO 1003 A 1 HETATM 11 O O72 ORO . . . D 4 -5.176 16.534 -10.339 1 46.41 ? O72 ORO 1003 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #