data_4OSG # _model_server_result.job_id ZYIgspNuHViOkFY3hGF3XA _model_server_result.datetime_utc '2024-12-03 04:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4osg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 4OSG # _exptl.entry_id 4OSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 67.94 _cell.angle_beta 77.7 _cell.angle_gamma 75.92 _cell.entry_id 4OSG _cell.length_a 36.12 _cell.length_b 74.21 _cell.length_c 82.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,W 1 1 B,H,I,J,K,X 2 1 C,L,M,N,O,P,Q,Y 3 1 D,R,S,T,U,V,Z 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 L N N ? 2 R N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 308 n n PA O2A NAP sing 309 n n PA O5B NAP sing 310 n n PA O3 NAP sing 311 n n O2A HOA2 NAP sing 312 n n O5B C5B NAP sing 313 n n C5B C4B NAP sing 314 n n C5B H51A NAP sing 315 n n C5B H52A NAP sing 316 n n C4B O4B NAP sing 317 n n C4B C3B NAP sing 318 n n C4B H4B NAP sing 319 n n O4B C1B NAP sing 320 n n C3B O3B NAP sing 321 n n C3B C2B NAP sing 322 n n C3B H3B NAP sing 323 n n O3B HO3A NAP sing 324 n n C2B O2B NAP sing 325 n n C2B C1B NAP sing 326 n n C2B H2B NAP sing 327 n n O2B P2B NAP sing 328 n n C1B N9A NAP sing 329 n n C1B H1B NAP sing 330 n n N9A C8A NAP sing 331 n y N9A C4A NAP sing 332 n y C8A N7A NAP doub 333 n y C8A H8A NAP sing 334 n n N7A C5A NAP sing 335 n y C5A C6A NAP sing 336 n y C5A C4A NAP doub 337 n y C6A N6A NAP sing 338 n n C6A N1A NAP doub 339 n y N6A H61A NAP sing 340 n n N6A H62A NAP sing 341 n n N1A C2A NAP sing 342 n y C2A N3A NAP doub 343 n y C2A H2A NAP sing 344 n n N3A C4A NAP sing 345 n y O3 PN NAP sing 346 n n PN O1N NAP doub 347 n n PN O2N NAP sing 348 n n PN O5D NAP sing 349 n n O5D C5D NAP sing 350 n n C5D C4D NAP sing 351 n n C5D H51N NAP sing 352 n n C5D H52N NAP sing 353 n n C4D O4D NAP sing 354 n n C4D C3D NAP sing 355 n n C4D H4D NAP sing 356 n n O4D C1D NAP sing 357 n n C3D O3D NAP sing 358 n n C3D C2D NAP sing 359 n n C3D H3D NAP sing 360 n n O3D HO3N NAP sing 361 n n C2D O2D NAP sing 362 n n C2D C1D NAP sing 363 n n C2D H2D NAP sing 364 n n O2D HO2N NAP sing 365 n n C1D N1N NAP sing 366 n n C1D H1D NAP sing 367 n n N1N C2N NAP sing 368 n y N1N C6N NAP doub 369 n y C2N C3N NAP doub 370 n y C2N H2N NAP sing 371 n n C3N C7N NAP sing 372 n n C3N C4N NAP sing 373 n y C7N O7N NAP doub 374 n n C7N N7N NAP sing 375 n n N7N H71N NAP sing 376 n n N7N H72N NAP sing 377 n n C4N C5N NAP doub 378 n y C4N H4N NAP sing 379 n n C5N C6N NAP sing 380 n y C5N H5N NAP sing 381 n n C6N H6N NAP sing 382 n n P2B O1X NAP doub 383 n n P2B O2X NAP sing 384 n n P2B O3X NAP sing 385 n n O2X HOP2 NAP sing 386 n n O3X HOP3 NAP sing 387 n n # _atom_sites.entry_id 4OSG _atom_sites.fract_transf_matrix[1][1] 0.027685 _atom_sites.fract_transf_matrix[1][2] -0.006944 _atom_sites.fract_transf_matrix[1][3] -0.003899 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013893 _atom_sites.fract_transf_matrix[2][3] -0.00505 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 401 207 NAP NAP . F 3 06U A 1 402 1 06U 06U . G 4 EOH A 1 403 1 EOH EOH . H 2 NAP B 1 401 207 NAP NAP . I 3 06U B 1 402 1 06U 06U . J 5 CAC B 1 403 1 CAC CAC . K 6 CL B 1 404 1 CL CL . L 2 NAP C 1 401 207 NAP NAP . M 3 06U C 1 402 1 06U 06U . N 7 PEG C 1 403 1 PEG PEG . O 6 CL C 1 404 1 CL CL . P 8 CA C 1 405 1 CA CA . Q 6 CL C 1 406 1 CL CL . R 2 NAP D 1 401 207 NAP NAP . S 3 06U D 1 402 1 06U 06U . T 6 CL D 1 403 1 CL CL . U 8 CA D 1 404 1 CA CA . V 5 CAC D 1 405 1 CAC CAC . W 9 HOH A 1 501 5 HOH HOH . W 9 HOH A 2 502 11 HOH HOH . W 9 HOH A 3 503 23 HOH HOH . W 9 HOH A 4 504 24 HOH HOH . W 9 HOH A 5 505 26 HOH HOH . X 9 HOH B 1 501 2 HOH HOH . Y 9 HOH C 1 501 3 HOH HOH . Y 9 HOH C 2 502 18 HOH HOH . Y 9 HOH C 3 503 21 HOH HOH . Z 9 HOH D 1 501 1 HOH HOH . Z 9 HOH D 2 502 9 HOH HOH . Z 9 HOH D 3 503 10 HOH HOH . Z 9 HOH D 4 504 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . L 2 21.688 -89.332 1.859 1 71.44 ? PA NAP 401 C 1 HETATM 2 O O1A NAP . . . L 2 21.54 -90.711 1.353 1 69.7 ? O1A NAP 401 C 1 HETATM 3 O O2A NAP . . . L 2 20.885 -88.39 1.048 1 69.91 ? O2A NAP 401 C 1 HETATM 4 O O5B NAP . . . L 2 21.302 -89.253 3.424 1 80.23 ? O5B NAP 401 C 1 HETATM 5 C C5B NAP . . . L 2 21.867 -90.146 4.377 1 82.3 ? C5B NAP 401 C 1 HETATM 6 C C4B NAP . . . L 2 21.444 -89.765 5.8 1 90.16 ? C4B NAP 401 C 1 HETATM 7 O O4B NAP . . . L 2 20.16 -90.271 6.047 1 93.96 ? O4B NAP 401 C 1 HETATM 8 C C3B NAP . . . L 2 22.365 -90.304 6.889 1 99.13 ? C3B NAP 401 C 1 HETATM 9 O O3B NAP . . . L 2 23.176 -89.28 7.405 1 97.22 ? O3B NAP 401 C 1 HETATM 10 C C2B NAP . . . L 2 21.482 -90.96 7.954 1 105.24 ? C2B NAP 401 C 1 HETATM 11 O O2B NAP . . . L 2 21.413 -90.228 9.191 1 108.18 ? O2B NAP 401 C 1 HETATM 12 C C1B NAP . . . L 2 20.117 -90.984 7.257 1 100.2 ? C1B NAP 401 C 1 HETATM 13 N N9A NAP . . . L 2 19.915 -92.392 6.906 1 99.66 ? N9A NAP 401 C 1 HETATM 14 C C8A NAP . . . L 2 20.201 -92.992 5.706 1 96.19 ? C8A NAP 401 C 1 HETATM 15 N N7A NAP . . . L 2 19.899 -94.304 5.826 1 98.28 ? N7A NAP 401 C 1 HETATM 16 C C5A NAP . . . L 2 19.432 -94.545 7.071 1 101.83 ? C5A NAP 401 C 1 HETATM 17 C C6A NAP . . . L 2 18.987 -95.685 7.72 1 106.2 ? C6A NAP 401 C 1 HETATM 18 N N6A NAP . . . L 2 18.97 -96.85 7.084 1 108.16 ? N6A NAP 401 C 1 HETATM 19 N N1A NAP . . . L 2 18.561 -95.594 9.031 1 109.74 ? N1A NAP 401 C 1 HETATM 20 C C2A NAP . . . L 2 18.58 -94.381 9.691 1 107.23 ? C2A NAP 401 C 1 HETATM 21 N N3A NAP . . . L 2 19.022 -93.254 9.042 1 102.97 ? N3A NAP 401 C 1 HETATM 22 C C4A NAP . . . L 2 19.441 -93.346 7.761 1 101.78 ? C4A NAP 401 C 1 HETATM 23 O O3 NAP . . . L 2 23.237 -88.897 1.909 1 69.64 ? O3 NAP 401 C 1 HETATM 24 P PN NAP . . . L 2 24.473 -89.007 0.885 1 70.46 ? PN NAP 401 C 1 HETATM 25 O O1N NAP . . . L 2 25.571 -88.167 1.416 1 66.47 ? O1N NAP 401 C 1 HETATM 26 O O2N NAP . . . L 2 24.716 -90.439 0.597 1 67.77 ? O2N NAP 401 C 1 HETATM 27 O O5D NAP . . . L 2 23.881 -88.305 -0.437 1 70.01 ? O5D NAP 401 C 1 HETATM 28 C C5D NAP . . . L 2 23.654 -86.913 -0.459 1 66.45 ? C5D NAP 401 C 1 HETATM 29 C C4D NAP . . . L 2 24.296 -86.292 -1.693 1 66.75 ? C4D NAP 401 C 1 HETATM 30 O O4D NAP . . . L 2 23.733 -86.823 -2.881 1 64.35 ? O4D NAP 401 C 1 HETATM 31 C C3D NAP . . . L 2 24.064 -84.794 -1.724 1 66.47 ? C3D NAP 401 C 1 HETATM 32 O O3D NAP . . . L 2 25.283 -84.17 -2.033 1 72.74 ? O3D NAP 401 C 1 HETATM 33 C C2D NAP . . . L 2 23.107 -84.573 -2.87 1 67.61 ? C2D NAP 401 C 1 HETATM 34 O O2D NAP . . . L 2 23.444 -83.399 -3.565 1 73.22 ? O2D NAP 401 C 1 HETATM 35 C C1D NAP . . . L 2 23.335 -85.782 -3.755 1 63.05 ? C1D NAP 401 C 1 HETATM 36 N N1N NAP . . . L 2 22.101 -86.127 -4.491 1 68.91 ? N1N NAP 401 C 1 HETATM 37 C C2N NAP . . . L 2 22.149 -86.298 -5.848 1 68.71 ? C2N NAP 401 C 1 HETATM 38 C C3N NAP . . . L 2 21.004 -86.626 -6.568 1 61.8 ? C3N NAP 401 C 1 HETATM 39 C C7N NAP . . . L 2 21.035 -86.727 -8.067 1 60.73 ? C7N NAP 401 C 1 HETATM 40 O O7N NAP . . . L 2 20.068 -87.513 -8.719 1 58.13 ? O7N NAP 401 C 1 HETATM 41 N N7N NAP . . . L 2 21.971 -86.072 -8.751 1 65.24 ? N7N NAP 401 C 1 HETATM 42 C C4N NAP . . . L 2 19.803 -86.779 -5.897 1 60.25 ? C4N NAP 401 C 1 HETATM 43 C C5N NAP . . . L 2 19.757 -86.603 -4.521 1 61.65 ? C5N NAP 401 C 1 HETATM 44 C C6N NAP . . . L 2 20.915 -86.276 -3.827 1 67.35 ? C6N NAP 401 C 1 HETATM 45 P P2B NAP . . . L 2 21.969 -90.739 10.646 1 123.82 ? P2B NAP 401 C 1 HETATM 46 O O1X NAP . . . L 2 22.117 -92.21 10.794 1 117.82 ? O1X NAP 401 C 1 HETATM 47 O O2X NAP . . . L 2 23.418 -90.298 10.794 1 125.23 ? O2X NAP 401 C 1 HETATM 48 O O3X NAP . . . L 2 21.081 -90.068 11.622 1 112.75 ? O3X NAP 401 C 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #