data_4OSO # _model_server_result.job_id ZR3AIGFCzBaeeNd7kbyhxg _model_server_result.datetime_utc '2024-11-09 02:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4OSO # _exptl.entry_id 4OSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OSO _cell.length_a 91.99 _cell.length_b 91.99 _cell.length_c 106.22 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -53.11 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 266 n n PA O2A NAP sing 267 n n PA O5B NAP sing 268 n n PA O3 NAP sing 269 n n O2A HOA2 NAP sing 270 n n O5B C5B NAP sing 271 n n C5B C4B NAP sing 272 n n C5B H51A NAP sing 273 n n C5B H52A NAP sing 274 n n C4B O4B NAP sing 275 n n C4B C3B NAP sing 276 n n C4B H4B NAP sing 277 n n O4B C1B NAP sing 278 n n C3B O3B NAP sing 279 n n C3B C2B NAP sing 280 n n C3B H3B NAP sing 281 n n O3B HO3A NAP sing 282 n n C2B O2B NAP sing 283 n n C2B C1B NAP sing 284 n n C2B H2B NAP sing 285 n n O2B P2B NAP sing 286 n n C1B N9A NAP sing 287 n n C1B H1B NAP sing 288 n n N9A C8A NAP sing 289 n y N9A C4A NAP sing 290 n y C8A N7A NAP doub 291 n y C8A H8A NAP sing 292 n n N7A C5A NAP sing 293 n y C5A C6A NAP sing 294 n y C5A C4A NAP doub 295 n y C6A N6A NAP sing 296 n n C6A N1A NAP doub 297 n y N6A H61A NAP sing 298 n n N6A H62A NAP sing 299 n n N1A C2A NAP sing 300 n y C2A N3A NAP doub 301 n y C2A H2A NAP sing 302 n n N3A C4A NAP sing 303 n y O3 PN NAP sing 304 n n PN O1N NAP doub 305 n n PN O2N NAP sing 306 n n PN O5D NAP sing 307 n n O5D C5D NAP sing 308 n n C5D C4D NAP sing 309 n n C5D H51N NAP sing 310 n n C5D H52N NAP sing 311 n n C4D O4D NAP sing 312 n n C4D C3D NAP sing 313 n n C4D H4D NAP sing 314 n n O4D C1D NAP sing 315 n n C3D O3D NAP sing 316 n n C3D C2D NAP sing 317 n n C3D H3D NAP sing 318 n n O3D HO3N NAP sing 319 n n C2D O2D NAP sing 320 n n C2D C1D NAP sing 321 n n C2D H2D NAP sing 322 n n O2D HO2N NAP sing 323 n n C1D N1N NAP sing 324 n n C1D H1D NAP sing 325 n n N1N C2N NAP sing 326 n y N1N C6N NAP doub 327 n y C2N C3N NAP doub 328 n y C2N H2N NAP sing 329 n n C3N C7N NAP sing 330 n n C3N C4N NAP sing 331 n y C7N O7N NAP doub 332 n n C7N N7N NAP sing 333 n n N7N H71N NAP sing 334 n n N7N H72N NAP sing 335 n n C4N C5N NAP doub 336 n y C4N H4N NAP sing 337 n n C5N C6N NAP sing 338 n y C5N H5N NAP sing 339 n n C6N H6N NAP sing 340 n n P2B O1X NAP doub 341 n n P2B O2X NAP sing 342 n n P2B O3X NAP sing 343 n n O2X HOP2 NAP sing 344 n n O3X HOP3 NAP sing 345 n n # _atom_sites.entry_id 4OSO _atom_sites.fract_transf_matrix[1][1] 0.010871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 2 NAP NAP . D 3 2V4 A 1 302 2 2V4 2V4 . E 4 PEG A 1 303 1 PEG PEG . F 2 NAP B 1 301 1 NAP NAP . G 3 2V4 B 1 302 1 2V4 2V4 . H 4 PEG B 1 303 2 PEG PEG . I 5 HOH A 1 401 1 HOH HOH . I 5 HOH A 2 402 3 HOH HOH . I 5 HOH A 3 403 4 HOH HOH . I 5 HOH A 4 404 8 HOH HOH . I 5 HOH A 5 405 10 HOH HOH . I 5 HOH A 6 406 11 HOH HOH . I 5 HOH A 7 407 12 HOH HOH . I 5 HOH A 8 408 13 HOH HOH . I 5 HOH A 9 409 14 HOH HOH . I 5 HOH A 10 410 15 HOH HOH . I 5 HOH A 11 411 16 HOH HOH . I 5 HOH A 12 412 17 HOH HOH . I 5 HOH A 13 413 19 HOH HOH . I 5 HOH A 14 414 21 HOH HOH . I 5 HOH A 15 415 23 HOH HOH . I 5 HOH A 16 416 25 HOH HOH . I 5 HOH A 17 417 26 HOH HOH . I 5 HOH A 18 418 27 HOH HOH . I 5 HOH A 19 419 28 HOH HOH . I 5 HOH A 20 420 32 HOH HOH . I 5 HOH A 21 421 33 HOH HOH . I 5 HOH A 22 422 35 HOH HOH . I 5 HOH A 23 423 36 HOH HOH . I 5 HOH A 24 424 37 HOH HOH . I 5 HOH A 25 425 38 HOH HOH . I 5 HOH A 26 426 42 HOH HOH . I 5 HOH A 27 427 44 HOH HOH . I 5 HOH A 28 428 45 HOH HOH . I 5 HOH A 29 429 46 HOH HOH . I 5 HOH A 30 430 48 HOH HOH . I 5 HOH A 31 431 53 HOH HOH . I 5 HOH A 32 432 54 HOH HOH . I 5 HOH A 33 433 55 HOH HOH . I 5 HOH A 34 434 56 HOH HOH . I 5 HOH A 35 435 57 HOH HOH . I 5 HOH A 36 436 58 HOH HOH . I 5 HOH A 37 437 60 HOH HOH . I 5 HOH A 38 438 61 HOH HOH . I 5 HOH A 39 439 63 HOH HOH . I 5 HOH A 40 440 64 HOH HOH . I 5 HOH A 41 441 65 HOH HOH . I 5 HOH A 42 442 66 HOH HOH . I 5 HOH A 43 443 67 HOH HOH . I 5 HOH A 44 444 73 HOH HOH . I 5 HOH A 45 445 75 HOH HOH . I 5 HOH A 46 446 76 HOH HOH . I 5 HOH A 47 447 85 HOH HOH . I 5 HOH A 48 448 86 HOH HOH . I 5 HOH A 49 449 88 HOH HOH . I 5 HOH A 50 450 89 HOH HOH . I 5 HOH A 51 451 90 HOH HOH . I 5 HOH A 52 452 91 HOH HOH . I 5 HOH A 53 453 92 HOH HOH . J 5 HOH B 1 401 2 HOH HOH . J 5 HOH B 2 402 5 HOH HOH . J 5 HOH B 3 403 6 HOH HOH . J 5 HOH B 4 404 7 HOH HOH . J 5 HOH B 5 405 9 HOH HOH . J 5 HOH B 6 406 18 HOH HOH . J 5 HOH B 7 407 20 HOH HOH . J 5 HOH B 8 408 22 HOH HOH . J 5 HOH B 9 409 24 HOH HOH . J 5 HOH B 10 410 29 HOH HOH . J 5 HOH B 11 411 30 HOH HOH . J 5 HOH B 12 412 31 HOH HOH . J 5 HOH B 13 413 34 HOH HOH . J 5 HOH B 14 414 39 HOH HOH . J 5 HOH B 15 415 40 HOH HOH . J 5 HOH B 16 416 41 HOH HOH . J 5 HOH B 17 417 43 HOH HOH . J 5 HOH B 18 418 47 HOH HOH . J 5 HOH B 19 419 49 HOH HOH . J 5 HOH B 20 420 50 HOH HOH . J 5 HOH B 21 421 51 HOH HOH . J 5 HOH B 22 422 52 HOH HOH . J 5 HOH B 23 423 59 HOH HOH . J 5 HOH B 24 424 62 HOH HOH . J 5 HOH B 25 425 68 HOH HOH . J 5 HOH B 26 426 69 HOH HOH . J 5 HOH B 27 427 70 HOH HOH . J 5 HOH B 28 428 71 HOH HOH . J 5 HOH B 29 429 72 HOH HOH . J 5 HOH B 30 430 74 HOH HOH . J 5 HOH B 31 431 77 HOH HOH . J 5 HOH B 32 432 78 HOH HOH . J 5 HOH B 33 433 79 HOH HOH . J 5 HOH B 34 434 80 HOH HOH . J 5 HOH B 35 435 81 HOH HOH . J 5 HOH B 36 436 82 HOH HOH . J 5 HOH B 37 437 83 HOH HOH . J 5 HOH B 38 438 84 HOH HOH . J 5 HOH B 39 439 87 HOH HOH . J 5 HOH B 40 440 93 HOH HOH . J 5 HOH B 41 441 94 HOH HOH . J 5 HOH B 42 442 95 HOH HOH . J 5 HOH B 43 443 96 HOH HOH . J 5 HOH B 44 444 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 2 2.351 -23.248 -12.841 1 33.05 ? PA NAP 301 B 1 HETATM 2 O O1A NAP . . . F 2 1.419 -23.357 -11.7 1 33.84 ? O1A NAP 301 B 1 HETATM 3 O O2A NAP . . . F 2 3.889 -23.127 -12.331 1 32.73 ? O2A NAP 301 B 1 HETATM 4 O O5B NAP . . . F 2 2.366 -24.473 -13.865 1 32.59 ? O5B NAP 301 B 1 HETATM 5 C C5B NAP . . . F 2 3.161 -24.335 -15.046 1 32.05 ? C5B NAP 301 B 1 HETATM 6 C C4B NAP . . . F 2 2.876 -25.473 -16.029 1 33.2 ? C4B NAP 301 B 1 HETATM 7 O O4B NAP . . . F 2 3.966 -25.398 -16.967 1 34.77 ? O4B NAP 301 B 1 HETATM 8 C C3B NAP . . . F 2 2.952 -26.851 -15.359 1 33.51 ? C3B NAP 301 B 1 HETATM 9 O O3B NAP . . . F 2 1.919 -27.706 -15.91 1 31.81 ? O3B NAP 301 B 1 HETATM 10 C C2B NAP . . . F 2 4.343 -27.359 -15.735 1 34.28 ? C2B NAP 301 B 1 HETATM 11 O O2B NAP . . . F 2 4.377 -28.808 -15.896 1 35.07 ? O2B NAP 301 B 1 HETATM 12 C C1B NAP . . . F 2 4.561 -26.691 -17.079 1 34.28 ? C1B NAP 301 B 1 HETATM 13 N N9A NAP . . . F 2 5.985 -26.458 -17.325 1 34.41 ? N9A NAP 301 B 1 HETATM 14 C C8A NAP . . . F 2 6.848 -25.725 -16.623 1 34.89 ? C8A NAP 301 B 1 HETATM 15 N N7A NAP . . . F 2 8.033 -25.812 -17.231 1 35.45 ? N7A NAP 301 B 1 HETATM 16 C C5A NAP . . . F 2 7.896 -26.598 -18.309 1 35.48 ? C5A NAP 301 B 1 HETATM 17 C C6A NAP . . . F 2 8.754 -27.01 -19.258 1 36.15 ? C6A NAP 301 B 1 HETATM 18 N N6A NAP . . . F 2 10.019 -26.598 -19.181 1 36.78 ? N6A NAP 301 B 1 HETATM 19 N N1A NAP . . . F 2 8.371 -27.811 -20.257 1 36.68 ? N1A NAP 301 B 1 HETATM 20 C C2A NAP . . . F 2 7.045 -28.227 -20.328 1 34.84 ? C2A NAP 301 B 1 HETATM 21 N N3A NAP . . . F 2 6.178 -27.786 -19.337 1 33.66 ? N3A NAP 301 B 1 HETATM 22 C C4A NAP . . . F 2 6.622 -26.993 -18.355 1 34.18 ? C4A NAP 301 B 1 HETATM 23 O O3 NAP . . . F 2 2.098 -21.953 -13.776 1 33.44 ? O3 NAP 301 B 1 HETATM 24 P PN NAP . . . F 2 0.811 -20.99 -13.737 1 33.61 ? PN NAP 301 B 1 HETATM 25 O O1N NAP . . . F 2 1.035 -20.007 -12.648 1 33.39 ? O1N NAP 301 B 1 HETATM 26 O O2N NAP . . . F 2 -0.439 -21.782 -13.802 1 33.82 -1 O2N NAP 301 B 1 HETATM 27 O O5D NAP . . . F 2 0.981 -20.205 -15.118 1 32.7 ? O5D NAP 301 B 1 HETATM 28 C C5D NAP . . . F 2 0.641 -20.748 -16.39 1 32.37 ? C5D NAP 301 B 1 HETATM 29 C C4D NAP . . . F 2 0.959 -19.663 -17.405 1 32.96 ? C4D NAP 301 B 1 HETATM 30 O O4D NAP . . . F 2 0.364 -18.445 -16.914 1 32.39 ? O4D NAP 301 B 1 HETATM 31 C C3D NAP . . . F 2 2.48 -19.405 -17.434 1 32.95 ? C3D NAP 301 B 1 HETATM 32 O O3D NAP . . . F 2 2.896 -19.184 -18.8 1 34.82 ? O3D NAP 301 B 1 HETATM 33 C C2D NAP . . . F 2 2.66 -18.133 -16.655 1 31.69 ? C2D NAP 301 B 1 HETATM 34 O O2D NAP . . . F 2 3.769 -17.4 -17.176 1 29.98 ? O2D NAP 301 B 1 HETATM 35 C C1D NAP . . . F 2 1.376 -17.433 -17.005 1 32.14 ? C1D NAP 301 B 1 HETATM 36 N N1N NAP . . . F 2 0.967 -16.44 -16.006 1 33.51 ? N1N NAP 301 B 1 HETATM 37 C C2N NAP . . . F 2 0.884 -16.782 -14.636 1 33.12 ? C2N NAP 301 B 1 HETATM 38 C C3N NAP . . . F 2 0.482 -15.831 -13.7 1 32.2 ? C3N NAP 301 B 1 HETATM 39 C C7N NAP . . . F 2 0.391 -16.16 -12.346 1 32.27 ? C7N NAP 301 B 1 HETATM 40 O O7N NAP . . . F 2 0.13 -15.298 -11.499 1 32.34 ? O7N NAP 301 B 1 HETATM 41 N N7N NAP . . . F 2 0.572 -17.454 -12.064 1 30.69 ? N7N NAP 301 B 1 HETATM 42 C C4N NAP . . . F 2 0.15 -14.552 -14.142 1 31.81 ? C4N NAP 301 B 1 HETATM 43 C C5N NAP . . . F 2 0.227 -14.214 -15.494 1 32.45 ? C5N NAP 301 B 1 HETATM 44 C C6N NAP . . . F 2 0.634 -15.147 -16.438 1 32.95 ? C6N NAP 301 B 1 HETATM 45 P P2B NAP . . . F 2 4.727 -29.768 -14.625 1 35.39 ? P2B NAP 301 B 1 HETATM 46 O O1X NAP . . . F 2 3.582 -29.994 -13.725 1 36.13 ? O1X NAP 301 B 1 HETATM 47 O O2X NAP . . . F 2 5.283 -31.147 -15.245 1 34.46 ? O2X NAP 301 B 1 HETATM 48 O O3X NAP . . . F 2 5.954 -29.048 -13.878 1 34.71 ? O3X NAP 301 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #