data_4OT1 # _model_server_result.job_id UYBtG_mzTlI2jz_FpztjTQ _model_server_result.datetime_utc '2025-04-28 05:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ot1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4OT1 # _exptl.entry_id 4OT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.68 _cell.angle_gamma 90 _cell.entry_id 4OT1 _cell.length_a 43.071 _cell.length_b 69.411 _cell.length_c 100.991 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 344 1_555 A SG CYS 82 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 B SG CYS 158 H CYS 158 1_555 B SG CYS 214 H CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 C SG CYS 22 L CYS 22 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf5 C SG CYS 137 L CYS 137 1_555 C SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4OT1 _atom_sites.fract_transf_matrix[1][1] 0.023217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00396 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 501 501 EDO EDO . E 4 EDO H 1 301 303 EDO EDO . F 5 EPE L 1 301 301 EPE EPE . G 4 EDO L 1 302 302 EDO EDO . H 6 HOH A 1 601 601 HOH HOH . H 6 HOH A 2 602 602 HOH HOH . H 6 HOH A 3 603 603 HOH HOH . H 6 HOH A 4 604 604 HOH HOH . H 6 HOH A 5 605 605 HOH HOH . H 6 HOH A 6 606 606 HOH HOH . H 6 HOH A 7 607 607 HOH HOH . H 6 HOH A 8 608 608 HOH HOH . H 6 HOH A 9 609 609 HOH HOH . H 6 HOH A 10 610 610 HOH HOH . H 6 HOH A 11 611 611 HOH HOH . H 6 HOH A 12 612 612 HOH HOH . H 6 HOH A 13 613 613 HOH HOH . H 6 HOH A 14 614 614 HOH HOH . H 6 HOH A 15 615 615 HOH HOH . H 6 HOH A 16 616 616 HOH HOH . H 6 HOH A 17 617 617 HOH HOH . H 6 HOH A 18 618 618 HOH HOH . H 6 HOH A 19 619 619 HOH HOH . H 6 HOH A 20 620 620 HOH HOH . H 6 HOH A 21 621 621 HOH HOH . H 6 HOH A 22 622 622 HOH HOH . H 6 HOH A 23 623 623 HOH HOH . H 6 HOH A 24 624 624 HOH HOH . H 6 HOH A 25 625 625 HOH HOH . H 6 HOH A 26 626 626 HOH HOH . H 6 HOH A 27 627 627 HOH HOH . H 6 HOH A 28 628 628 HOH HOH . H 6 HOH A 29 629 629 HOH HOH . H 6 HOH A 30 630 630 HOH HOH . H 6 HOH A 31 631 631 HOH HOH . H 6 HOH A 32 632 632 HOH HOH . H 6 HOH A 33 633 633 HOH HOH . H 6 HOH A 34 634 634 HOH HOH . H 6 HOH A 35 635 635 HOH HOH . H 6 HOH A 36 636 636 HOH HOH . H 6 HOH A 37 637 637 HOH HOH . H 6 HOH A 38 638 638 HOH HOH . H 6 HOH A 39 639 639 HOH HOH . H 6 HOH A 40 640 640 HOH HOH . H 6 HOH A 41 641 641 HOH HOH . H 6 HOH A 42 642 642 HOH HOH . H 6 HOH A 43 643 643 HOH HOH . H 6 HOH A 44 644 644 HOH HOH . H 6 HOH A 45 645 645 HOH HOH . H 6 HOH A 46 646 647 HOH HOH . H 6 HOH A 47 647 648 HOH HOH . H 6 HOH A 48 648 649 HOH HOH . H 6 HOH A 49 649 650 HOH HOH . H 6 HOH A 50 650 651 HOH HOH . H 6 HOH A 51 651 652 HOH HOH . H 6 HOH A 52 652 653 HOH HOH . H 6 HOH A 53 653 654 HOH HOH . H 6 HOH A 54 654 655 HOH HOH . H 6 HOH A 55 655 656 HOH HOH . H 6 HOH A 56 656 657 HOH HOH . H 6 HOH A 57 657 658 HOH HOH . H 6 HOH A 58 658 659 HOH HOH . H 6 HOH A 59 659 660 HOH HOH . H 6 HOH A 60 660 661 HOH HOH . H 6 HOH A 61 661 662 HOH HOH . H 6 HOH A 62 662 663 HOH HOH . H 6 HOH A 63 663 664 HOH HOH . H 6 HOH A 64 664 665 HOH HOH . H 6 HOH A 65 665 666 HOH HOH . H 6 HOH A 66 666 667 HOH HOH . I 6 HOH H 1 401 301 HOH HOH . I 6 HOH H 2 402 302 HOH HOH . I 6 HOH H 3 403 303 HOH HOH . I 6 HOH H 4 404 304 HOH HOH . I 6 HOH H 5 405 305 HOH HOH . I 6 HOH H 6 406 306 HOH HOH . I 6 HOH H 7 407 307 HOH HOH . I 6 HOH H 8 408 308 HOH HOH . I 6 HOH H 9 409 309 HOH HOH . I 6 HOH H 10 410 310 HOH HOH . I 6 HOH H 11 411 311 HOH HOH . I 6 HOH H 12 412 312 HOH HOH . I 6 HOH H 13 413 313 HOH HOH . I 6 HOH H 14 414 314 HOH HOH . I 6 HOH H 15 415 315 HOH HOH . I 6 HOH H 16 416 316 HOH HOH . I 6 HOH H 17 417 317 HOH HOH . I 6 HOH H 18 418 318 HOH HOH . I 6 HOH H 19 419 319 HOH HOH . I 6 HOH H 20 420 320 HOH HOH . I 6 HOH H 21 421 321 HOH HOH . I 6 HOH H 22 422 322 HOH HOH . I 6 HOH H 23 423 323 HOH HOH . I 6 HOH H 24 424 324 HOH HOH . I 6 HOH H 25 425 325 HOH HOH . I 6 HOH H 26 426 326 HOH HOH . I 6 HOH H 27 427 327 HOH HOH . I 6 HOH H 28 428 328 HOH HOH . I 6 HOH H 29 429 329 HOH HOH . I 6 HOH H 30 430 330 HOH HOH . I 6 HOH H 31 431 331 HOH HOH . I 6 HOH H 32 432 332 HOH HOH . I 6 HOH H 33 433 333 HOH HOH . I 6 HOH H 34 434 334 HOH HOH . I 6 HOH H 35 435 335 HOH HOH . I 6 HOH H 36 436 336 HOH HOH . I 6 HOH H 37 437 337 HOH HOH . I 6 HOH H 38 438 338 HOH HOH . I 6 HOH H 39 439 340 HOH HOH . I 6 HOH H 40 440 341 HOH HOH . I 6 HOH H 41 441 342 HOH HOH . I 6 HOH H 42 442 343 HOH HOH . I 6 HOH H 43 443 344 HOH HOH . I 6 HOH H 44 444 345 HOH HOH . I 6 HOH H 45 445 346 HOH HOH . I 6 HOH H 46 446 347 HOH HOH . I 6 HOH H 47 447 348 HOH HOH . I 6 HOH H 48 448 349 HOH HOH . I 6 HOH H 49 449 350 HOH HOH . I 6 HOH H 50 450 351 HOH HOH . I 6 HOH H 51 451 352 HOH HOH . I 6 HOH H 52 452 353 HOH HOH . I 6 HOH H 53 453 354 HOH HOH . I 6 HOH H 54 454 355 HOH HOH . I 6 HOH H 55 455 356 HOH HOH . I 6 HOH H 56 456 357 HOH HOH . I 6 HOH H 57 457 358 HOH HOH . I 6 HOH H 58 458 359 HOH HOH . I 6 HOH H 59 459 360 HOH HOH . I 6 HOH H 60 460 361 HOH HOH . I 6 HOH H 61 461 362 HOH HOH . I 6 HOH H 62 462 363 HOH HOH . I 6 HOH H 63 463 364 HOH HOH . I 6 HOH H 64 464 365 HOH HOH . I 6 HOH H 65 465 366 HOH HOH . I 6 HOH H 66 466 367 HOH HOH . I 6 HOH H 67 467 368 HOH HOH . I 6 HOH H 68 468 369 HOH HOH . I 6 HOH H 69 469 370 HOH HOH . I 6 HOH H 70 470 371 HOH HOH . I 6 HOH H 71 471 372 HOH HOH . I 6 HOH H 72 472 373 HOH HOH . I 6 HOH H 73 473 374 HOH HOH . I 6 HOH H 74 474 375 HOH HOH . I 6 HOH H 75 475 376 HOH HOH . I 6 HOH H 76 476 377 HOH HOH . I 6 HOH H 77 477 378 HOH HOH . I 6 HOH H 78 478 379 HOH HOH . I 6 HOH H 79 479 380 HOH HOH . I 6 HOH H 80 480 381 HOH HOH . I 6 HOH H 81 481 382 HOH HOH . I 6 HOH H 82 482 383 HOH HOH . I 6 HOH H 83 483 384 HOH HOH . I 6 HOH H 84 484 385 HOH HOH . I 6 HOH H 85 485 386 HOH HOH . I 6 HOH H 86 486 387 HOH HOH . I 6 HOH H 87 487 388 HOH HOH . I 6 HOH H 88 488 389 HOH HOH . I 6 HOH H 89 489 390 HOH HOH . I 6 HOH H 90 490 391 HOH HOH . I 6 HOH H 91 491 392 HOH HOH . I 6 HOH H 92 492 393 HOH HOH . I 6 HOH H 93 493 394 HOH HOH . I 6 HOH H 94 494 395 HOH HOH . I 6 HOH H 95 495 396 HOH HOH . I 6 HOH H 96 496 397 HOH HOH . I 6 HOH H 97 497 398 HOH HOH . I 6 HOH H 98 498 399 HOH HOH . I 6 HOH H 99 499 400 HOH HOH . I 6 HOH H 100 500 401 HOH HOH . I 6 HOH H 101 501 402 HOH HOH . I 6 HOH H 102 502 403 HOH HOH . I 6 HOH H 103 503 404 HOH HOH . I 6 HOH H 104 504 405 HOH HOH . I 6 HOH H 105 505 406 HOH HOH . I 6 HOH H 106 506 407 HOH HOH . I 6 HOH H 107 507 408 HOH HOH . I 6 HOH H 108 508 409 HOH HOH . I 6 HOH H 109 509 410 HOH HOH . J 6 HOH L 1 401 646 HOH HOH . J 6 HOH L 2 402 339 HOH HOH . J 6 HOH L 3 403 401 HOH HOH . J 6 HOH L 4 404 402 HOH HOH . J 6 HOH L 5 405 403 HOH HOH . J 6 HOH L 6 406 404 HOH HOH . J 6 HOH L 7 407 405 HOH HOH . J 6 HOH L 8 408 406 HOH HOH . J 6 HOH L 9 409 407 HOH HOH . J 6 HOH L 10 410 408 HOH HOH . J 6 HOH L 11 411 409 HOH HOH . J 6 HOH L 12 412 410 HOH HOH . J 6 HOH L 13 413 411 HOH HOH . J 6 HOH L 14 414 412 HOH HOH . J 6 HOH L 15 415 413 HOH HOH . J 6 HOH L 16 416 414 HOH HOH . J 6 HOH L 17 417 415 HOH HOH . J 6 HOH L 18 418 416 HOH HOH . J 6 HOH L 19 419 417 HOH HOH . J 6 HOH L 20 420 418 HOH HOH . J 6 HOH L 21 421 419 HOH HOH . J 6 HOH L 22 422 420 HOH HOH . J 6 HOH L 23 423 421 HOH HOH . J 6 HOH L 24 424 422 HOH HOH . J 6 HOH L 25 425 423 HOH HOH . J 6 HOH L 26 426 424 HOH HOH . J 6 HOH L 27 427 425 HOH HOH . J 6 HOH L 28 428 426 HOH HOH . J 6 HOH L 29 429 427 HOH HOH . J 6 HOH L 30 430 428 HOH HOH . J 6 HOH L 31 431 429 HOH HOH . J 6 HOH L 32 432 430 HOH HOH . J 6 HOH L 33 433 431 HOH HOH . J 6 HOH L 34 434 432 HOH HOH . J 6 HOH L 35 435 433 HOH HOH . J 6 HOH L 36 436 434 HOH HOH . J 6 HOH L 37 437 435 HOH HOH . J 6 HOH L 38 438 436 HOH HOH . J 6 HOH L 39 439 437 HOH HOH . J 6 HOH L 40 440 438 HOH HOH . J 6 HOH L 41 441 439 HOH HOH . J 6 HOH L 42 442 440 HOH HOH . J 6 HOH L 43 443 441 HOH HOH . J 6 HOH L 44 444 442 HOH HOH . J 6 HOH L 45 445 443 HOH HOH . J 6 HOH L 46 446 444 HOH HOH . J 6 HOH L 47 447 445 HOH HOH . J 6 HOH L 48 448 446 HOH HOH . J 6 HOH L 49 449 447 HOH HOH . J 6 HOH L 50 450 448 HOH HOH . J 6 HOH L 51 451 449 HOH HOH . J 6 HOH L 52 452 450 HOH HOH . J 6 HOH L 53 453 451 HOH HOH . J 6 HOH L 54 454 452 HOH HOH . J 6 HOH L 55 455 453 HOH HOH . J 6 HOH L 56 456 454 HOH HOH . J 6 HOH L 57 457 455 HOH HOH . J 6 HOH L 58 458 456 HOH HOH . J 6 HOH L 59 459 457 HOH HOH . J 6 HOH L 60 460 458 HOH HOH . J 6 HOH L 61 461 459 HOH HOH . J 6 HOH L 62 462 460 HOH HOH . J 6 HOH L 63 463 461 HOH HOH . J 6 HOH L 64 464 462 HOH HOH . J 6 HOH L 65 465 463 HOH HOH . J 6 HOH L 66 466 464 HOH HOH . J 6 HOH L 67 467 465 HOH HOH . J 6 HOH L 68 468 466 HOH HOH . J 6 HOH L 69 469 467 HOH HOH . J 6 HOH L 70 470 468 HOH HOH . J 6 HOH L 71 471 469 HOH HOH . J 6 HOH L 72 472 470 HOH HOH . J 6 HOH L 73 473 471 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -27.628 -8.448 134.643 1 38.03 ? C1 EDO 302 L 1 HETATM 2 O O1 EDO . . . G 4 -27.537 -7.016 134.849 1 44.01 ? O1 EDO 302 L 1 HETATM 3 C C2 EDO . . . G 4 -28.276 -8.776 133.315 1 37.35 ? C2 EDO 302 L 1 HETATM 4 O O2 EDO . . . G 4 -27.368 -9.013 132.192 1 34.4 ? O2 EDO 302 L 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 573 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #