data_4OT2 # _model_server_result.job_id dcpEkDHNcHxmzwGK9ygYWg _model_server_result.datetime_utc '2024-11-23 18:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ot2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 4OT2 # _exptl.entry_id 4OT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OT2 _cell.length_a 93.77 _cell.length_b 93.77 _cell.length_c 142.41 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 224 n n C1 C3 MLI sing 225 n n C1 H11 MLI sing 226 n n C1 H12 MLI sing 227 n n C2 O6 MLI doub 228 n n C2 O7 MLI sing 229 n n C3 O8 MLI doub 230 n n C3 O9 MLI sing 231 n n # _atom_sites.entry_id 4OT2 _atom_sites.fract_transf_matrix[1][1] 0.010664 _atom_sites.fract_transf_matrix[1][2] 0.006157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NPS A 1 601 1 NPS NPS . C 2 NPS A 1 602 2 NPS NPS . D 3 SIN A 1 603 1 SIN SIN . E 4 ACT A 1 604 1 ACT ACT . F 4 ACT A 1 605 2 ACT ACT . G 5 MLI A 1 606 1 MLI MLI . H 5 MLI A 1 607 2 MLI MLI . I 5 MLI A 1 608 3 MLI MLI . J 5 MLI A 1 609 4 MLI MLI . K 6 HOH A 1 701 1 HOH HOH . K 6 HOH A 2 702 2 HOH HOH . K 6 HOH A 3 703 3 HOH HOH . K 6 HOH A 4 704 4 HOH HOH . K 6 HOH A 5 705 5 HOH HOH . K 6 HOH A 6 706 6 HOH HOH . K 6 HOH A 7 707 7 HOH HOH . K 6 HOH A 8 708 8 HOH HOH . K 6 HOH A 9 709 9 HOH HOH . K 6 HOH A 10 710 10 HOH HOH . K 6 HOH A 11 711 11 HOH HOH . K 6 HOH A 12 712 12 HOH HOH . K 6 HOH A 13 713 13 HOH HOH . K 6 HOH A 14 714 14 HOH HOH . K 6 HOH A 15 715 15 HOH HOH . K 6 HOH A 16 716 16 HOH HOH . K 6 HOH A 17 717 17 HOH HOH . K 6 HOH A 18 718 18 HOH HOH . K 6 HOH A 19 719 19 HOH HOH . K 6 HOH A 20 720 20 HOH HOH . K 6 HOH A 21 721 21 HOH HOH . K 6 HOH A 22 722 22 HOH HOH . K 6 HOH A 23 723 23 HOH HOH . K 6 HOH A 24 724 24 HOH HOH . K 6 HOH A 25 725 25 HOH HOH . K 6 HOH A 26 726 26 HOH HOH . K 6 HOH A 27 727 27 HOH HOH . K 6 HOH A 28 728 28 HOH HOH . K 6 HOH A 29 729 29 HOH HOH . K 6 HOH A 30 730 30 HOH HOH . K 6 HOH A 31 731 31 HOH HOH . K 6 HOH A 32 732 32 HOH HOH . K 6 HOH A 33 733 33 HOH HOH . K 6 HOH A 34 734 34 HOH HOH . K 6 HOH A 35 735 35 HOH HOH . K 6 HOH A 36 736 36 HOH HOH . K 6 HOH A 37 737 37 HOH HOH . K 6 HOH A 38 738 38 HOH HOH . K 6 HOH A 39 739 39 HOH HOH . K 6 HOH A 40 740 40 HOH HOH . K 6 HOH A 41 741 41 HOH HOH . K 6 HOH A 42 742 42 HOH HOH . K 6 HOH A 43 743 43 HOH HOH . K 6 HOH A 44 744 44 HOH HOH . K 6 HOH A 45 745 45 HOH HOH . K 6 HOH A 46 746 46 HOH HOH . K 6 HOH A 47 747 47 HOH HOH . K 6 HOH A 48 748 48 HOH HOH . K 6 HOH A 49 749 49 HOH HOH . K 6 HOH A 50 750 50 HOH HOH . K 6 HOH A 51 751 51 HOH HOH . K 6 HOH A 52 752 52 HOH HOH . K 6 HOH A 53 753 53 HOH HOH . K 6 HOH A 54 754 54 HOH HOH . K 6 HOH A 55 755 55 HOH HOH . K 6 HOH A 56 756 56 HOH HOH . K 6 HOH A 57 757 57 HOH HOH . K 6 HOH A 58 758 58 HOH HOH . K 6 HOH A 59 759 59 HOH HOH . K 6 HOH A 60 760 60 HOH HOH . K 6 HOH A 61 761 61 HOH HOH . K 6 HOH A 62 762 62 HOH HOH . K 6 HOH A 63 763 63 HOH HOH . K 6 HOH A 64 764 64 HOH HOH . K 6 HOH A 65 765 65 HOH HOH . K 6 HOH A 66 766 66 HOH HOH . K 6 HOH A 67 767 67 HOH HOH . K 6 HOH A 68 768 68 HOH HOH . K 6 HOH A 69 769 69 HOH HOH . K 6 HOH A 70 770 70 HOH HOH . K 6 HOH A 71 771 71 HOH HOH . K 6 HOH A 72 772 72 HOH HOH . K 6 HOH A 73 773 73 HOH HOH . K 6 HOH A 74 774 74 HOH HOH . K 6 HOH A 75 775 75 HOH HOH . K 6 HOH A 76 776 76 HOH HOH . K 6 HOH A 77 777 77 HOH HOH . K 6 HOH A 78 778 78 HOH HOH . K 6 HOH A 79 779 79 HOH HOH . K 6 HOH A 80 780 80 HOH HOH . K 6 HOH A 81 781 81 HOH HOH . K 6 HOH A 82 782 82 HOH HOH . K 6 HOH A 83 783 83 HOH HOH . K 6 HOH A 84 784 84 HOH HOH . K 6 HOH A 85 785 85 HOH HOH . K 6 HOH A 86 786 86 HOH HOH . K 6 HOH A 87 787 87 HOH HOH . K 6 HOH A 88 788 88 HOH HOH . K 6 HOH A 89 789 89 HOH HOH . K 6 HOH A 90 790 90 HOH HOH . K 6 HOH A 91 791 91 HOH HOH . K 6 HOH A 92 792 92 HOH HOH . K 6 HOH A 93 793 93 HOH HOH . K 6 HOH A 94 794 94 HOH HOH . K 6 HOH A 95 795 95 HOH HOH . K 6 HOH A 96 796 96 HOH HOH . K 6 HOH A 97 797 97 HOH HOH . K 6 HOH A 98 798 98 HOH HOH . K 6 HOH A 99 799 99 HOH HOH . K 6 HOH A 100 800 100 HOH HOH . K 6 HOH A 101 801 101 HOH HOH . K 6 HOH A 102 802 102 HOH HOH . K 6 HOH A 103 803 103 HOH HOH . K 6 HOH A 104 804 104 HOH HOH . K 6 HOH A 105 805 105 HOH HOH . K 6 HOH A 106 806 106 HOH HOH . K 6 HOH A 107 807 107 HOH HOH . K 6 HOH A 108 808 108 HOH HOH . K 6 HOH A 109 809 109 HOH HOH . K 6 HOH A 110 810 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . H 5 53.856 36.946 66.19 1 74.05 ? C1 MLI 607 A 1 HETATM 2 C C2 MLI . . . H 5 54.668 35.772 65.622 1 78.1 ? C2 MLI 607 A 1 HETATM 3 C C3 MLI . . . H 5 53.271 37.948 65.181 1 75.4 ? C3 MLI 607 A 1 HETATM 4 O O6 MLI . . . H 5 55.339 35.007 66.394 1 77.87 ? O6 MLI 607 A 1 HETATM 5 O O7 MLI . . . H 5 54.638 35.574 64.386 1 70.08 ? O7 MLI 607 A 1 HETATM 6 O O8 MLI . . . H 5 53.942 38.222 64.165 1 69.58 ? O8 MLI 607 A 1 HETATM 7 O O9 MLI . . . H 5 52.15 38.515 65.388 1 68.05 ? O9 MLI 607 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #