data_4OV9
#
_model_server_result.job_id            69NbrWGKGDekXS1YuAYrlg 
_model_server_result.datetime_utc      '2024-10-13 03:28:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ov9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    4OV9 
#
_exptl.entry_id    4OV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              176.167 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-hydroxy-2-(propan-2-yl)butanedioic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4OV9 
_cell.length_a            131.354 
_cell.length_b            131.354 
_cell.length_c            46.719 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 197.031 113.755901 15.573 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 35 A ASP 15 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc2 A NE2 HIS 227 A HIS 207 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc3 A NE2 HIS 229 A HIS 209 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc4 B ZN ZN . A ZN 401 1_555 C OAD VPM . A VPM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc5 B ZN ZN . A ZN 401 1_555 C OAG VPM . A VPM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc6 B ZN ZN . A ZN 401 1_555 D O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'C7 H12 O5' 
_chem_comp.formula_weight    176.167 
_chem_comp.id                VPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-hydroxy-2-(propan-2-yl)butanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAK VPM sing 376 n n 
CAA CAK VPM sing 377 n n 
OAG CAL VPM sing 378 n n 
CAK CAL VPM sing 379 n n 
CAL CAJ VPM sing 380 n n 
CAL CAH VPM sing 381 n n 
OAD CAJ VPM doub 382 n n 
CAJ OAF VPM sing 383 n n 
OAE CAI VPM doub 384 n n 
OAC CAI VPM sing 385 n n 
CAI CAH VPM sing 386 n n 
CAA H1 VPM sing 387 n n 
CAA H2 VPM sing 388 n n 
CAA H3 VPM sing 389 n n 
CAK H4 VPM sing 390 n n 
CAB H5 VPM sing 391 n n 
CAB H6 VPM sing 392 n n 
CAB H7 VPM sing 393 n n 
OAF H8 VPM sing 394 n n 
OAG H9 VPM sing 395 n n 
CAH H10 VPM sing 396 n n 
CAH H11 VPM sing 397 n n 
OAC H12 VPM sing 398 n n 
#
_atom_sites.entry_id                     4OV9 
_atom_sites.fract_transf_matrix[1][1]    0.007613 
_atom_sites.fract_transf_matrix[1][2]    0.004395 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008791 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 401 ZN ZN . 
C 3 VPM A 1 402 501 VPM IPM . 
D 4 HOH A 1 501 1 HOH HOH . 
D 4 HOH A 2 502 2 HOH HOH . 
D 4 HOH A 3 503 3 HOH HOH . 
D 4 HOH A 4 504 4 HOH HOH . 
D 4 HOH A 5 505 5 HOH HOH . 
D 4 HOH A 6 506 6 HOH HOH . 
D 4 HOH A 7 507 7 HOH HOH . 
D 4 HOH A 8 508 8 HOH HOH . 
D 4 HOH A 9 509 9 HOH HOH . 
D 4 HOH A 10 510 10 HOH HOH . 
D 4 HOH A 11 511 11 HOH HOH . 
D 4 HOH A 12 512 12 HOH HOH . 
D 4 HOH A 13 513 13 HOH HOH . 
D 4 HOH A 14 514 14 HOH HOH . 
D 4 HOH A 15 515 15 HOH HOH . 
D 4 HOH A 16 516 16 HOH HOH . 
D 4 HOH A 17 517 17 HOH HOH . 
D 4 HOH A 18 518 18 HOH HOH . 
D 4 HOH A 19 519 19 HOH HOH . 
D 4 HOH A 20 520 20 HOH HOH . 
D 4 HOH A 21 521 21 HOH HOH . 
D 4 HOH A 22 522 22 HOH HOH . 
D 4 HOH A 23 523 23 HOH HOH . 
D 4 HOH A 24 524 24 HOH HOH . 
D 4 HOH A 25 525 25 HOH HOH . 
D 4 HOH A 26 526 27 HOH HOH . 
D 4 HOH A 27 527 28 HOH HOH . 
D 4 HOH A 28 528 29 HOH HOH . 
D 4 HOH A 29 529 30 HOH HOH . 
D 4 HOH A 30 530 31 HOH HOH . 
D 4 HOH A 31 531 32 HOH HOH . 
D 4 HOH A 32 532 33 HOH HOH . 
D 4 HOH A 33 533 34 HOH HOH . 
D 4 HOH A 34 534 35 HOH HOH . 
D 4 HOH A 35 535 36 HOH HOH . 
D 4 HOH A 36 536 37 HOH HOH . 
D 4 HOH A 37 537 38 HOH HOH . 
D 4 HOH A 38 538 39 HOH HOH . 
D 4 HOH A 39 539 40 HOH HOH . 
D 4 HOH A 40 540 41 HOH HOH . 
D 4 HOH A 41 541 42 HOH HOH . 
D 4 HOH A 42 542 43 HOH HOH . 
D 4 HOH A 43 543 44 HOH HOH . 
D 4 HOH A 44 544 45 HOH HOH . 
D 4 HOH A 45 545 46 HOH HOH . 
D 4 HOH A 46 546 47 HOH HOH . 
D 4 HOH A 47 547 48 HOH HOH . 
D 4 HOH A 48 548 49 HOH HOH . 
D 4 HOH A 49 549 50 HOH HOH . 
D 4 HOH A 50 550 51 HOH HOH . 
D 4 HOH A 51 551 52 HOH HOH . 
D 4 HOH A 52 552 53 HOH HOH . 
D 4 HOH A 53 553 54 HOH HOH . 
D 4 HOH A 54 554 55 HOH HOH . 
D 4 HOH A 55 555 56 HOH HOH . 
D 4 HOH A 56 556 57 HOH HOH . 
D 4 HOH A 57 557 58 HOH HOH . 
D 4 HOH A 58 558 59 HOH HOH . 
D 4 HOH A 59 559 60 HOH HOH . 
D 4 HOH A 60 560 61 HOH HOH . 
D 4 HOH A 61 561 62 HOH HOH . 
D 4 HOH A 62 562 63 HOH HOH . 
D 4 HOH A 63 563 64 HOH HOH . 
D 4 HOH A 64 564 65 HOH HOH . 
D 4 HOH A 65 565 66 HOH HOH . 
D 4 HOH A 66 566 67 HOH HOH . 
D 4 HOH A 67 567 68 HOH HOH . 
D 4 HOH A 68 568 69 HOH HOH . 
D 4 HOH A 69 569 70 HOH HOH . 
D 4 HOH A 70 570 71 HOH HOH . 
D 4 HOH A 71 571 72 HOH HOH . 
D 4 HOH A 72 572 73 HOH HOH . 
D 4 HOH A 73 573 74 HOH HOH . 
D 4 HOH A 74 574 75 HOH HOH . 
D 4 HOH A 75 575 76 HOH HOH . 
D 4 HOH A 76 576 77 HOH HOH . 
D 4 HOH A 77 577 78 HOH HOH . 
D 4 HOH A 78 578 79 HOH HOH . 
D 4 HOH A 79 579 80 HOH HOH . 
D 4 HOH A 80 580 81 HOH HOH . 
D 4 HOH A 81 581 82 HOH HOH . 
D 4 HOH A 82 582 83 HOH HOH . 
D 4 HOH A 83 583 84 HOH HOH . 
D 4 HOH A 84 584 85 HOH HOH . 
D 4 HOH A 85 585 86 HOH HOH . 
D 4 HOH A 86 586 87 HOH HOH . 
D 4 HOH A 87 587 88 HOH HOH . 
D 4 HOH A 88 588 89 HOH HOH . 
D 4 HOH A 89 589 90 HOH HOH . 
D 4 HOH A 90 590 91 HOH HOH . 
D 4 HOH A 91 591 92 HOH HOH . 
D 4 HOH A 92 592 93 HOH HOH . 
D 4 HOH A 93 593 94 HOH HOH . 
D 4 HOH A 94 594 95 HOH HOH . 
D 4 HOH A 95 595 96 HOH HOH . 
D 4 HOH A 96 596 97 HOH HOH . 
D 4 HOH A 97 597 98 HOH HOH . 
D 4 HOH A 98 598 99 HOH HOH . 
D 4 HOH A 99 599 100 HOH HOH . 
D 4 HOH A 100 600 101 HOH HOH . 
D 4 HOH A 101 601 102 HOH HOH . 
D 4 HOH A 102 602 103 HOH HOH . 
D 4 HOH A 103 603 104 HOH HOH . 
D 4 HOH A 104 604 105 HOH HOH . 
D 4 HOH A 105 605 106 HOH HOH . 
D 4 HOH A 106 606 107 HOH HOH . 
D 4 HOH A 107 607 108 HOH HOH . 
D 4 HOH A 108 608 109 HOH HOH . 
D 4 HOH A 109 609 110 HOH HOH . 
D 4 HOH A 110 610 111 HOH HOH . 
D 4 HOH A 111 611 112 HOH HOH . 
D 4 HOH A 112 612 113 HOH HOH . 
D 4 HOH A 113 613 114 HOH HOH . 
D 4 HOH A 114 614 115 HOH HOH . 
D 4 HOH A 115 615 116 HOH HOH . 
D 4 HOH A 116 616 117 HOH HOH . 
D 4 HOH A 117 617 118 HOH HOH . 
D 4 HOH A 118 618 119 HOH HOH . 
D 4 HOH A 119 619 120 HOH HOH . 
D 4 HOH A 120 620 121 HOH HOH . 
D 4 HOH A 121 621 122 HOH HOH . 
D 4 HOH A 122 622 123 HOH HOH . 
D 4 HOH A 123 623 124 HOH HOH . 
D 4 HOH A 124 624 125 HOH HOH . 
D 4 HOH A 125 625 126 HOH HOH . 
D 4 HOH A 126 626 127 HOH HOH . 
D 4 HOH A 127 627 128 HOH HOH . 
D 4 HOH A 128 628 129 HOH HOH . 
D 4 HOH A 129 629 130 HOH HOH . 
D 4 HOH A 130 630 131 HOH HOH . 
D 4 HOH A 131 631 132 HOH HOH . 
D 4 HOH A 132 632 133 HOH HOH . 
D 4 HOH A 133 633 134 HOH HOH . 
D 4 HOH A 134 634 135 HOH HOH . 
D 4 HOH A 135 635 136 HOH HOH . 
D 4 HOH A 136 636 137 HOH HOH . 
D 4 HOH A 137 637 138 HOH HOH . 
D 4 HOH A 138 638 139 HOH HOH . 
D 4 HOH A 139 639 140 HOH HOH . 
D 4 HOH A 140 640 141 HOH HOH . 
D 4 HOH A 141 641 142 HOH HOH . 
D 4 HOH A 142 642 143 HOH HOH . 
D 4 HOH A 143 643 144 HOH HOH . 
D 4 HOH A 144 644 145 HOH HOH . 
D 4 HOH A 145 645 146 HOH HOH . 
D 4 HOH A 146 646 147 HOH HOH . 
D 4 HOH A 147 647 149 HOH HOH . 
D 4 HOH A 148 648 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA VPM . . . C 3 73.904 56.751 9.057 1 19.89 ? CAA VPM 402 A 1 
HETATM 2 C CAK VPM . . . C 3 75.367 56.963 9.447 1 22.2 ? CAK VPM 402 A 1 
HETATM 3 C CAB VPM . . . C 3 76.302 56.689 8.263 1 19.41 ? CAB VPM 402 A 1 
HETATM 4 C CAL VPM . . . C 3 75.677 58.263 10.226 1 25.41 ? CAL VPM 402 A 1 
HETATM 5 C CAJ VPM . . . C 3 77.105 58.223 10.791 1 24.48 ? CAJ VPM 402 A 1 
HETATM 6 O OAF VPM . . . C 3 77.435 57.349 11.523 1 23.16 ? OAF VPM 402 A 1 
HETATM 7 O OAD VPM . . . C 3 77.877 59.392 10.751 1 21.7 ? OAD VPM 402 A 1 
HETATM 8 O OAG VPM . . . C 3 75.554 59.36 9.35 1 25.34 ? OAG VPM 402 A 1 
HETATM 9 C CAH VPM . . . C 3 74.747 58.486 11.427 1 29.04 ? CAH VPM 402 A 1 
HETATM 10 C CAI VPM . . . C 3 73.571 59.458 11.294 1 32.98 ? CAI VPM 402 A 1 
HETATM 11 O OAE VPM . . . C 3 73.747 60.622 11.129 1 36.76 ? OAE VPM 402 A 1 
HETATM 12 O OAC VPM . . . C 3 72.281 58.941 11.227 1 36.19 ? OAC VPM 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           12 
#