data_4OVE # _model_server_result.job_id S9MilFuZTE21flt6yoS9mQ _model_server_result.datetime_utc '2024-12-26 20:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ove # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":510}' # _entry.id 4OVE # _exptl.entry_id 4OVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OVE _cell.length_a 69.754 _cell.length_b 69.754 _cell.length_c 334.802 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 111.600667 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 1 NAG 2 n B NAG 2 B 2 NAG C 2 NAG 2 n B BMA 3 B 3 BMA C 3 BMA 2 n B MAN 4 B 4 MAN C 4 MAN 2 n B MAN 5 B 5 MAN C 5 MAN 3 n C NAG 1 C 1 NAG D 1 NAG 3 n C NAG 2 C 2 NAG D 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 41 1_555 A SG CYS 29 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 48 A CYS 70 1_555 A SG CYS 72 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 A SG CYS 56 A CYS 78 1_555 A SG CYS 69 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 97 A CYS 119 1_555 A SG CYS 130 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf5 A SG CYS 159 A CYS 181 1_555 A SG CYS 181 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf6 A SG CYS 263 A CYS 285 1_555 A SG CYS 272 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf7 A SG CYS 265 A CYS 287 1_555 A SG CYS 282 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf8 A SG CYS 284 A CYS 306 1_555 A SG CYS 293 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf9 A SG CYS 296 A CYS 318 1_555 A SG CYS 316 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf10 A SG CYS 319 A CYS 341 1_555 A SG CYS 328 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf11 A SG CYS 321 A CYS 343 1_555 A SG CYS 346 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf12 A SG CYS 349 A CYS 371 1_555 A SG CYS 358 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf13 A SG CYS 361 A CYS 383 1_555 A SG CYS 379 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf14 A SG CYS 382 A CYS 404 1_555 A SG CYS 394 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf15 A SG CYS 384 A CYS 406 1_555 A SG CYS 401 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf16 A SG CYS 403 A CYS 425 1_555 A SG CYS 412 A CYS 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf17 A SG CYS 415 A CYS 437 1_555 A SG CYS 429 A CYS 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 73 A ASN 95 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 94 A ASN 116 1_555 D C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 109 A ASN 131 1_555 C C1 NAG . C NAG 1 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.455 ? covale ? covale4 A ND2 ASN 109 A ASN 131 1_555 C C1 NAG . C NAG 1 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.459 ? covale ? covale5 A ND2 ASN 109 A ASN 131 1_555 C C1 NAG . C NAG 1 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.465 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale8 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.44 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.442 ? covale ? covale12 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O PHE 85 A PHE 107 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc2 A OD1 ASP 88 A ASP 110 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 A OD1 ASN 90 A ASN 112 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc4 A OG1 THR 96 A THR 118 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 A O THR 96 A THR 118 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 A O SER 255 A SER 277 1_555 E CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc7 E CA CA . A CA 509 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OVE _atom_sites.fract_transf_matrix[1][1] 0.014336 _atom_sites.fract_transf_matrix[1][2] 0.008277 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 508 1 NAG NAG . E 5 CA A 1 509 1 CA CA . F 6 CL A 1 510 1 CL CL . G 7 HOH A 1 601 1 HOH HOH . G 7 HOH A 2 602 2 HOH HOH . G 7 HOH A 3 603 3 HOH HOH . G 7 HOH A 4 604 4 HOH HOH . G 7 HOH A 5 605 5 HOH HOH . G 7 HOH A 6 606 6 HOH HOH . G 7 HOH A 7 607 7 HOH HOH . G 7 HOH A 8 608 8 HOH HOH . G 7 HOH A 9 609 9 HOH HOH . G 7 HOH A 10 610 10 HOH HOH . G 7 HOH A 11 611 11 HOH HOH . G 7 HOH A 12 612 12 HOH HOH . G 7 HOH A 13 613 13 HOH HOH . G 7 HOH A 14 614 14 HOH HOH . G 7 HOH A 15 615 15 HOH HOH . G 7 HOH A 16 616 16 HOH HOH . G 7 HOH A 17 617 17 HOH HOH . G 7 HOH A 18 618 18 HOH HOH . G 7 HOH A 19 619 19 HOH HOH . G 7 HOH A 20 620 20 HOH HOH . G 7 HOH A 21 621 21 HOH HOH . G 7 HOH A 22 622 22 HOH HOH . G 7 HOH A 23 623 23 HOH HOH . G 7 HOH A 24 624 24 HOH HOH . G 7 HOH A 25 625 25 HOH HOH . G 7 HOH A 26 626 26 HOH HOH . G 7 HOH A 27 627 27 HOH HOH . G 7 HOH A 28 628 28 HOH HOH . G 7 HOH A 29 629 29 HOH HOH . G 7 HOH A 30 630 30 HOH HOH . G 7 HOH A 31 631 31 HOH HOH . G 7 HOH A 32 632 32 HOH HOH . G 7 HOH A 33 633 33 HOH HOH . G 7 HOH A 34 634 34 HOH HOH . G 7 HOH A 35 635 35 HOH HOH . G 7 HOH A 36 636 36 HOH HOH . G 7 HOH A 37 637 37 HOH HOH . G 7 HOH A 38 638 38 HOH HOH . G 7 HOH A 39 639 39 HOH HOH . G 7 HOH A 40 640 40 HOH HOH . G 7 HOH A 41 641 41 HOH HOH . G 7 HOH A 42 642 42 HOH HOH . G 7 HOH A 43 643 43 HOH HOH . G 7 HOH A 44 644 44 HOH HOH . G 7 HOH A 45 645 45 HOH HOH . G 7 HOH A 46 646 46 HOH HOH . G 7 HOH A 47 647 47 HOH HOH . G 7 HOH A 48 648 48 HOH HOH . G 7 HOH A 49 649 49 HOH HOH . G 7 HOH A 50 650 50 HOH HOH . G 7 HOH A 51 651 51 HOH HOH . G 7 HOH A 52 652 52 HOH HOH . G 7 HOH A 53 653 53 HOH HOH . G 7 HOH A 54 654 54 HOH HOH . G 7 HOH A 55 655 55 HOH HOH . G 7 HOH A 56 656 56 HOH HOH . G 7 HOH A 57 657 57 HOH HOH . G 7 HOH A 58 658 58 HOH HOH . G 7 HOH A 59 659 59 HOH HOH . G 7 HOH A 60 660 60 HOH HOH . G 7 HOH A 61 661 61 HOH HOH . G 7 HOH A 62 662 62 HOH HOH . G 7 HOH A 63 663 63 HOH HOH . G 7 HOH A 64 664 64 HOH HOH . G 7 HOH A 65 665 65 HOH HOH . G 7 HOH A 66 666 66 HOH HOH . G 7 HOH A 67 667 67 HOH HOH . G 7 HOH A 68 668 68 HOH HOH . G 7 HOH A 69 669 69 HOH HOH . G 7 HOH A 70 670 70 HOH HOH . G 7 HOH A 71 671 71 HOH HOH . G 7 HOH A 72 672 72 HOH HOH . G 7 HOH A 73 673 73 HOH HOH . G 7 HOH A 74 674 74 HOH HOH . G 7 HOH A 75 675 75 HOH HOH . G 7 HOH A 76 676 76 HOH HOH . G 7 HOH A 77 677 77 HOH HOH . G 7 HOH A 78 678 78 HOH HOH . G 7 HOH A 79 679 79 HOH HOH . G 7 HOH A 80 680 80 HOH HOH . G 7 HOH A 81 681 81 HOH HOH . G 7 HOH A 82 682 82 HOH HOH . G 7 HOH A 83 683 83 HOH HOH . G 7 HOH A 84 684 84 HOH HOH . G 7 HOH A 85 685 85 HOH HOH . G 7 HOH A 86 686 86 HOH HOH . G 7 HOH A 87 687 87 HOH HOH . G 7 HOH A 88 688 88 HOH HOH . G 7 HOH A 89 689 89 HOH HOH . G 7 HOH A 90 690 90 HOH HOH . G 7 HOH A 91 691 91 HOH HOH . G 7 HOH A 92 692 92 HOH HOH . G 7 HOH A 93 693 93 HOH HOH . G 7 HOH A 94 694 94 HOH HOH . G 7 HOH A 95 695 95 HOH HOH . G 7 HOH A 96 696 96 HOH HOH . G 7 HOH A 97 697 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 31.466 _atom_site.Cartn_y 13.55 _atom_site.Cartn_z 27.041 _atom_site.occupancy 0.74 _atom_site.B_iso_or_equiv 38.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 510 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #