data_4OVZ
#
_model_server_result.job_id            '_DaPRr2pSBUQBUNAbjqLIQ' 
_model_server_result.datetime_utc      '2024-11-22 06:27:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ovz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":902}' 
#
_entry.id    4OVZ 
#
_exptl.entry_id    4OVZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              390.493 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(4-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.66 
_cell.angle_gamma         90 
_cell.entry_id            4OVZ 
_cell.length_a            119.772 
_cell.length_b            73.508 
_cell.length_c            98.269 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OVZ 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,M 1 1 
B,F,G,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 111 A ASN 111 1_555 A N OCS 112 A OCS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 A C OCS 112 A OCS 112 1_555 A N TYR 113 A TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C GLN 270 A GLN 270 1_555 A N CSO 271 A CSO 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 A C CSO 271 A CSO 271 1_555 A N GLY 272 A GLY 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 B C ASN 111 B ASN 111 1_555 B N OCS 112 B OCS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 B C OCS 112 B OCS 112 1_555 B N TYR 113 B TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 A SG CYS 190 A CYS 190 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc2 A SG CYS 193 A CYS 193 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc3 A SG CYS 225 A CYS 225 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc4 A SG CYS 227 A CYS 227 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
metalc ? metalc5 B SG CYS 190 B CYS 190 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc6 B SG CYS 193 B CYS 193 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc7 B O LYS 218 B LYS 218 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc8 B SG CYS 227 B CYS 227 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc9 B O LEU 235 B LEU 235 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc10 B OH TYR 311 B TYR 311 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc11 B OG1 THR 313 B THR 313 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
#
_chem_comp.formula           'C25 H27 F N2 O' 
_chem_comp.formula_weight    390.493 
_chem_comp.id                P85 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(4-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 P85 doub 276 n y 
C9 C10 P85 sing 277 n y 
C8 C7 P85 sing 278 n y 
C10 C5 P85 doub 279 n y 
F55 C26 P85 sing 280 n n 
C26 C25 P85 doub 281 n y 
C26 C27 P85 sing 282 n y 
C7 C6 P85 doub 283 n y 
C25 C24 P85 sing 284 n y 
C5 C6 P85 sing 285 n y 
C5 C4 P85 sing 286 n y 
C27 C28 P85 doub 287 n y 
C6 C1 P85 sing 288 n y 
C4 C3 P85 doub 289 n y 
C24 C23 P85 doub 290 n y 
C28 C23 P85 sing 291 n y 
C23 C22 P85 sing 292 n n 
C1 C11 P85 sing 293 n n 
C1 C2 P85 doub 294 n y 
C3 C2 P85 sing 295 n y 
N21 C22 P85 sing 296 n n 
N21 C19 P85 sing 297 n n 
C18 C17 P85 sing 298 n n 
C18 N13 P85 sing 299 n n 
C11 N13 P85 sing 300 n n 
C11 C12 P85 sing 301 n n 
C17 C16 P85 sing 302 n n 
C16 C19 P85 sing 303 n n 
C16 C15 P85 sing 304 n n 
N13 C14 P85 sing 305 n n 
C19 O20 P85 doub 306 n n 
C14 C15 P85 sing 307 n n 
C27 H271 P85 sing 308 n n 
C28 H281 P85 sing 309 n n 
C25 H251 P85 sing 310 n n 
C24 H241 P85 sing 311 n n 
C22 H221 P85 sing 312 n n 
C22 H222 P85 sing 313 n n 
N21 H211 P85 sing 314 n n 
C16 H161 P85 sing 315 n n 
C17 H172 P85 sing 316 n n 
C17 H171 P85 sing 317 n n 
C18 H182 P85 sing 318 n n 
C18 H181 P85 sing 319 n n 
C14 H141 P85 sing 320 n n 
C14 H142 P85 sing 321 n n 
C15 H151 P85 sing 322 n n 
C15 H152 P85 sing 323 n n 
C11 H111 P85 sing 324 n n 
C12 H123 P85 sing 325 n n 
C12 H122 P85 sing 326 n n 
C12 H121 P85 sing 327 n n 
C2 H21 P85 sing 328 n n 
C3 H31 P85 sing 329 n n 
C4 H41 P85 sing 330 n n 
C10 H101 P85 sing 331 n n 
C9 H91 P85 sing 332 n n 
C8 H81 P85 sing 333 n n 
C7 H71 P85 sing 334 n n 
#
_atom_sites.entry_id                     4OVZ 
_atom_sites.fract_transf_matrix[1][1]    0.008349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002029 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010472 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 901 901 ZN ZN . 
D 4 P85 A 1 902 1 P85 P85 . 
E 5 DMS A 1 903 5 DMS DMS . 
F 3 ZN B 1 901 901 ZN ZN . 
G 4 P85 B 1 902 1 P85 P85 . 
H 6 NA B 1 903 1 NA NA . 
I 5 DMS B 1 904 2 DMS DMS . 
J 5 DMS B 1 905 3 DMS DMS . 
K 5 DMS B 1 906 4 DMS DMS . 
L 5 DMS B 1 907 6 DMS DMS . 
M 7 HOH A 1 1001 4 HOH HOH . 
M 7 HOH A 2 1002 5 HOH HOH . 
M 7 HOH A 3 1003 8 HOH HOH . 
M 7 HOH A 4 1004 9 HOH HOH . 
M 7 HOH A 5 1005 10 HOH HOH . 
M 7 HOH A 6 1006 11 HOH HOH . 
M 7 HOH A 7 1007 13 HOH HOH . 
M 7 HOH A 8 1008 14 HOH HOH . 
M 7 HOH A 9 1009 15 HOH HOH . 
M 7 HOH A 10 1010 16 HOH HOH . 
M 7 HOH A 11 1011 17 HOH HOH . 
M 7 HOH A 12 1012 21 HOH HOH . 
M 7 HOH A 13 1013 22 HOH HOH . 
M 7 HOH A 14 1014 27 HOH HOH . 
M 7 HOH A 15 1015 28 HOH HOH . 
M 7 HOH A 16 1016 29 HOH HOH . 
M 7 HOH A 17 1017 30 HOH HOH . 
M 7 HOH A 18 1018 34 HOH HOH . 
M 7 HOH A 19 1019 35 HOH HOH . 
M 7 HOH A 20 1020 37 HOH HOH . 
M 7 HOH A 21 1021 38 HOH HOH . 
M 7 HOH A 22 1022 39 HOH HOH . 
M 7 HOH A 23 1023 40 HOH HOH . 
M 7 HOH A 24 1024 41 HOH HOH . 
M 7 HOH A 25 1025 46 HOH HOH . 
M 7 HOH A 26 1026 50 HOH HOH . 
M 7 HOH A 27 1027 51 HOH HOH . 
M 7 HOH A 28 1028 55 HOH HOH . 
M 7 HOH A 29 1029 56 HOH HOH . 
M 7 HOH A 30 1030 59 HOH HOH . 
M 7 HOH A 31 1031 63 HOH HOH . 
M 7 HOH A 32 1032 65 HOH HOH . 
M 7 HOH A 33 1033 66 HOH HOH . 
M 7 HOH A 34 1034 69 HOH HOH . 
M 7 HOH A 35 1035 71 HOH HOH . 
M 7 HOH A 36 1036 72 HOH HOH . 
M 7 HOH A 37 1037 73 HOH HOH . 
M 7 HOH A 38 1038 74 HOH HOH . 
M 7 HOH A 39 1039 75 HOH HOH . 
M 7 HOH A 40 1040 76 HOH HOH . 
M 7 HOH A 41 1041 77 HOH HOH . 
N 7 HOH B 1 1001 67 HOH HOH . 
N 7 HOH B 2 1002 12 HOH HOH . 
N 7 HOH B 3 1003 68 HOH HOH . 
N 7 HOH B 4 1004 1 HOH HOH . 
N 7 HOH B 5 1005 2 HOH HOH . 
N 7 HOH B 6 1006 3 HOH HOH . 
N 7 HOH B 7 1007 6 HOH HOH . 
N 7 HOH B 8 1008 7 HOH HOH . 
N 7 HOH B 9 1009 18 HOH HOH . 
N 7 HOH B 10 1010 19 HOH HOH . 
N 7 HOH B 11 1011 23 HOH HOH . 
N 7 HOH B 12 1012 24 HOH HOH . 
N 7 HOH B 13 1013 25 HOH HOH . 
N 7 HOH B 14 1014 31 HOH HOH . 
N 7 HOH B 15 1015 32 HOH HOH . 
N 7 HOH B 16 1016 36 HOH HOH . 
N 7 HOH B 17 1017 42 HOH HOH . 
N 7 HOH B 18 1018 43 HOH HOH . 
N 7 HOH B 19 1019 44 HOH HOH . 
N 7 HOH B 20 1020 45 HOH HOH . 
N 7 HOH B 21 1021 47 HOH HOH . 
N 7 HOH B 22 1022 49 HOH HOH . 
N 7 HOH B 23 1023 52 HOH HOH . 
N 7 HOH B 24 1024 53 HOH HOH . 
N 7 HOH B 25 1025 54 HOH HOH . 
N 7 HOH B 26 1026 57 HOH HOH . 
N 7 HOH B 27 1027 58 HOH HOH . 
N 7 HOH B 28 1028 60 HOH HOH . 
N 7 HOH B 29 1029 61 HOH HOH . 
N 7 HOH B 30 1030 62 HOH HOH . 
N 7 HOH B 31 1031 64 HOH HOH . 
N 7 HOH B 32 1032 70 HOH HOH . 
N 7 HOH B 33 1033 78 HOH HOH . 
N 7 HOH B 34 1034 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F55 P85 . . . G 4 -22.884 36.158 -39.853 1 27.92 ? F55 P85 902 B 1 
HETATM 2 C C26 P85 . . . G 4 -21.837 35.345 -39.931 1 32.24 ? C26 P85 902 B 1 
HETATM 3 C C27 P85 . . . G 4 -20.519 35.853 -39.837 1 30.22 ? C27 P85 902 B 1 
HETATM 4 C C28 P85 . . . G 4 -19.418 34.986 -39.903 1 32.48 ? C28 P85 902 B 1 
HETATM 5 C C25 P85 . . . G 4 -21.989 33.912 -40.12 1 34.15 ? C25 P85 902 B 1 
HETATM 6 C C24 P85 . . . G 4 -20.895 33.044 -40.178 1 30.96 ? C24 P85 902 B 1 
HETATM 7 C C23 P85 . . . G 4 -19.587 33.568 -40.055 1 28.21 ? C23 P85 902 B 1 
HETATM 8 C C22 P85 . . . G 4 -18.373 32.707 -40.135 1 23.5 ? C22 P85 902 B 1 
HETATM 9 N N21 P85 . . . G 4 -17.373 33.236 -41.055 1 20.68 ? N21 P85 902 B 1 
HETATM 10 C C19 P85 . . . G 4 -16.093 33.59 -40.6 1 25.17 ? C19 P85 902 B 1 
HETATM 11 O O20 P85 . . . G 4 -15.803 33.459 -39.453 1 23.72 ? O20 P85 902 B 1 
HETATM 12 C C16 P85 . . . G 4 -15.081 34.186 -41.601 1 25.47 ? C16 P85 902 B 1 
HETATM 13 C C17 P85 . . . G 4 -15.105 35.653 -41.409 1 18.51 ? C17 P85 902 B 1 
HETATM 14 C C18 P85 . . . G 4 -13.838 36.333 -41.809 1 20.29 ? C18 P85 902 B 1 
HETATM 15 N N13 P85 . . . G 4 -12.998 35.617 -42.821 1 30.81 ? N13 P85 902 B 1 
HETATM 16 C C14 P85 . . . G 4 -12.888 34.134 -42.625 1 20.63 ? C14 P85 902 B 1 
HETATM 17 C C15 P85 . . . G 4 -13.715 33.617 -41.489 1 17.26 ? C15 P85 902 B 1 
HETATM 18 C C11 P85 . . . G 4 -11.914 36.297 -43.733 1 25.86 ? C11 P85 902 B 1 
HETATM 19 C C12 P85 . . . G 4 -10.487 36.037 -43.361 1 10.19 ? C12 P85 902 B 1 
HETATM 20 C C1 P85 . . . G 4 -12.224 37.877 -43.81 1 19.89 ? C1 P85 902 B 1 
HETATM 21 C C2 P85 . . . G 4 -11.612 38.674 -42.925 1 15.83 ? C2 P85 902 B 1 
HETATM 22 C C3 P85 . . . G 4 -11.858 40.136 -42.924 1 16.75 ? C3 P85 902 B 1 
HETATM 23 C C4 P85 . . . G 4 -12.723 40.701 -43.807 1 17.15 ? C4 P85 902 B 1 
HETATM 24 C C5 P85 . . . G 4 -13.406 39.855 -44.776 1 16.96 ? C5 P85 902 B 1 
HETATM 25 C C6 P85 . . . G 4 -13.172 38.496 -44.788 1 16.29 ? C6 P85 902 B 1 
HETATM 26 C C10 P85 . . . G 4 -14.274 40.475 -45.708 1 13.35 ? C10 P85 902 B 1 
HETATM 27 C C9 P85 . . . G 4 -14.945 39.653 -46.656 1 15.23 ? C9 P85 902 B 1 
HETATM 28 C C8 P85 . . . G 4 -14.733 38.294 -46.674 1 14.9 ? C8 P85 902 B 1 
HETATM 29 C C7 P85 . . . G 4 -13.844 37.691 -45.765 1 18.69 ? C7 P85 902 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#