data_4OVZ # _model_server_result.job_id RzLd5Oqbibv-EKPUl5qdMg _model_server_result.datetime_utc '2024-11-22 06:08:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ovz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":903}' # _entry.id 4OVZ # _exptl.entry_id 4OVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.66 _cell.angle_gamma 90 _cell.entry_id 4OVZ _cell.length_a 119.772 _cell.length_b 73.508 _cell.length_c 98.269 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OVZ _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,M 1 1 B,F,G,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 111 A ASN 111 1_555 A N OCS 112 A OCS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C OCS 112 A OCS 112 1_555 A N TYR 113 A TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C GLN 270 A GLN 270 1_555 A N CSO 271 A CSO 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C CSO 271 A CSO 271 1_555 A N GLY 272 A GLY 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 B C ASN 111 B ASN 111 1_555 B N OCS 112 B OCS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C OCS 112 B OCS 112 1_555 B N TYR 113 B TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 190 A CYS 190 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc2 A SG CYS 193 A CYS 193 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc3 A SG CYS 225 A CYS 225 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc4 A SG CYS 227 A CYS 227 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc5 B SG CYS 190 B CYS 190 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc6 B SG CYS 193 B CYS 193 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc7 B O LYS 218 B LYS 218 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc8 B SG CYS 227 B CYS 227 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc9 B O LEU 235 B LEU 235 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc10 B OH TYR 311 B TYR 311 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc11 B OG1 THR 313 B THR 313 1_555 H NA NA . B NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OVZ _atom_sites.fract_transf_matrix[1][1] 0.008349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002029 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 901 901 ZN ZN . D 4 P85 A 1 902 1 P85 P85 . E 5 DMS A 1 903 5 DMS DMS . F 3 ZN B 1 901 901 ZN ZN . G 4 P85 B 1 902 1 P85 P85 . H 6 NA B 1 903 1 NA NA . I 5 DMS B 1 904 2 DMS DMS . J 5 DMS B 1 905 3 DMS DMS . K 5 DMS B 1 906 4 DMS DMS . L 5 DMS B 1 907 6 DMS DMS . M 7 HOH A 1 1001 4 HOH HOH . M 7 HOH A 2 1002 5 HOH HOH . M 7 HOH A 3 1003 8 HOH HOH . M 7 HOH A 4 1004 9 HOH HOH . M 7 HOH A 5 1005 10 HOH HOH . M 7 HOH A 6 1006 11 HOH HOH . M 7 HOH A 7 1007 13 HOH HOH . M 7 HOH A 8 1008 14 HOH HOH . M 7 HOH A 9 1009 15 HOH HOH . M 7 HOH A 10 1010 16 HOH HOH . M 7 HOH A 11 1011 17 HOH HOH . M 7 HOH A 12 1012 21 HOH HOH . M 7 HOH A 13 1013 22 HOH HOH . M 7 HOH A 14 1014 27 HOH HOH . M 7 HOH A 15 1015 28 HOH HOH . M 7 HOH A 16 1016 29 HOH HOH . M 7 HOH A 17 1017 30 HOH HOH . M 7 HOH A 18 1018 34 HOH HOH . M 7 HOH A 19 1019 35 HOH HOH . M 7 HOH A 20 1020 37 HOH HOH . M 7 HOH A 21 1021 38 HOH HOH . M 7 HOH A 22 1022 39 HOH HOH . M 7 HOH A 23 1023 40 HOH HOH . M 7 HOH A 24 1024 41 HOH HOH . M 7 HOH A 25 1025 46 HOH HOH . M 7 HOH A 26 1026 50 HOH HOH . M 7 HOH A 27 1027 51 HOH HOH . M 7 HOH A 28 1028 55 HOH HOH . M 7 HOH A 29 1029 56 HOH HOH . M 7 HOH A 30 1030 59 HOH HOH . M 7 HOH A 31 1031 63 HOH HOH . M 7 HOH A 32 1032 65 HOH HOH . M 7 HOH A 33 1033 66 HOH HOH . M 7 HOH A 34 1034 69 HOH HOH . M 7 HOH A 35 1035 71 HOH HOH . M 7 HOH A 36 1036 72 HOH HOH . M 7 HOH A 37 1037 73 HOH HOH . M 7 HOH A 38 1038 74 HOH HOH . M 7 HOH A 39 1039 75 HOH HOH . M 7 HOH A 40 1040 76 HOH HOH . M 7 HOH A 41 1041 77 HOH HOH . N 7 HOH B 1 1001 67 HOH HOH . N 7 HOH B 2 1002 12 HOH HOH . N 7 HOH B 3 1003 68 HOH HOH . N 7 HOH B 4 1004 1 HOH HOH . N 7 HOH B 5 1005 2 HOH HOH . N 7 HOH B 6 1006 3 HOH HOH . N 7 HOH B 7 1007 6 HOH HOH . N 7 HOH B 8 1008 7 HOH HOH . N 7 HOH B 9 1009 18 HOH HOH . N 7 HOH B 10 1010 19 HOH HOH . N 7 HOH B 11 1011 23 HOH HOH . N 7 HOH B 12 1012 24 HOH HOH . N 7 HOH B 13 1013 25 HOH HOH . N 7 HOH B 14 1014 31 HOH HOH . N 7 HOH B 15 1015 32 HOH HOH . N 7 HOH B 16 1016 36 HOH HOH . N 7 HOH B 17 1017 42 HOH HOH . N 7 HOH B 18 1018 43 HOH HOH . N 7 HOH B 19 1019 44 HOH HOH . N 7 HOH B 20 1020 45 HOH HOH . N 7 HOH B 21 1021 47 HOH HOH . N 7 HOH B 22 1022 49 HOH HOH . N 7 HOH B 23 1023 52 HOH HOH . N 7 HOH B 24 1024 53 HOH HOH . N 7 HOH B 25 1025 54 HOH HOH . N 7 HOH B 26 1026 57 HOH HOH . N 7 HOH B 27 1027 58 HOH HOH . N 7 HOH B 28 1028 60 HOH HOH . N 7 HOH B 29 1029 61 HOH HOH . N 7 HOH B 30 1030 62 HOH HOH . N 7 HOH B 31 1031 64 HOH HOH . N 7 HOH B 32 1032 70 HOH HOH . N 7 HOH B 33 1033 78 HOH HOH . N 7 HOH B 34 1034 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 11.529 _atom_site.Cartn_y 50.463 _atom_site.Cartn_z -43.01 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 903 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 122 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #