data_4OXN # _model_server_result.job_id lIInlCi8mTGjhqcz3ahjGQ _model_server_result.datetime_utc '2024-10-13 22:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4OXN # _exptl.entry_id 4OXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OXN _cell.length_a 88.952 _cell.length_b 97.15 _cell.length_c 187.009 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OXN _symmetry.cell_setting . _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 48.575 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 367 n n PA O2A NAD sing 368 n n PA O5B NAD sing 369 n n PA O3 NAD sing 370 n n O2A HOA2 NAD sing 371 n n O5B C5B NAD sing 372 n n C5B C4B NAD sing 373 n n C5B H51A NAD sing 374 n n C5B H52A NAD sing 375 n n C4B O4B NAD sing 376 n n C4B C3B NAD sing 377 n n C4B H4B NAD sing 378 n n O4B C1B NAD sing 379 n n C3B O3B NAD sing 380 n n C3B C2B NAD sing 381 n n C3B H3B NAD sing 382 n n O3B HO3A NAD sing 383 n n C2B O2B NAD sing 384 n n C2B C1B NAD sing 385 n n C2B H2B NAD sing 386 n n O2B HO2A NAD sing 387 n n C1B N9A NAD sing 388 n n C1B H1B NAD sing 389 n n N9A C8A NAD sing 390 n y N9A C4A NAD sing 391 n y C8A N7A NAD doub 392 n y C8A H8A NAD sing 393 n n N7A C5A NAD sing 394 n y C5A C6A NAD sing 395 n y C5A C4A NAD doub 396 n y C6A N6A NAD sing 397 n n C6A N1A NAD doub 398 n y N6A H61A NAD sing 399 n n N6A H62A NAD sing 400 n n N1A C2A NAD sing 401 n y C2A N3A NAD doub 402 n y C2A H2A NAD sing 403 n n N3A C4A NAD sing 404 n y O3 PN NAD sing 405 n n PN O1N NAD doub 406 n n PN O2N NAD sing 407 n n PN O5D NAD sing 408 n n O5D C5D NAD sing 409 n n C5D C4D NAD sing 410 n n C5D H51N NAD sing 411 n n C5D H52N NAD sing 412 n n C4D O4D NAD sing 413 n n C4D C3D NAD sing 414 n n C4D H4D NAD sing 415 n n O4D C1D NAD sing 416 n n C3D O3D NAD sing 417 n n C3D C2D NAD sing 418 n n C3D H3D NAD sing 419 n n O3D HO3N NAD sing 420 n n C2D O2D NAD sing 421 n n C2D C1D NAD sing 422 n n C2D H2D NAD sing 423 n n O2D HO2N NAD sing 424 n n C1D N1N NAD sing 425 n n C1D H1D NAD sing 426 n n N1N C2N NAD sing 427 n y N1N C6N NAD doub 428 n y C2N C3N NAD doub 429 n y C2N H2N NAD sing 430 n n C3N C7N NAD sing 431 n n C3N C4N NAD sing 432 n y C7N O7N NAD doub 433 n n C7N N7N NAD sing 434 n n N7N H71N NAD sing 435 n n N7N H72N NAD sing 436 n n C4N C5N NAD doub 437 n y C4N H4N NAD sing 438 n n C5N C6N NAD sing 439 n y C5N H5N NAD sing 440 n n C6N H6N NAD sing 441 n n # _atom_sites.entry_id 4OXN _atom_sites.fract_transf_matrix[1][1] 0.011242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 300 NAD NAD . D 3 1S5 A 1 302 301 1S5 55P . E 4 CL A 1 303 9 CL CLO . F 5 2NV A 1 304 6 2NV JEF . G 5 2NV A 1 305 7 2NV JEF . H 5 2NV A 1 306 8 2NV JEF . I 5 2NV A 1 307 9 2NV JEF . J 2 NAD B 1 301 300 NAD NAD . K 3 1S5 B 1 302 301 1S5 55P . L 6 EPE B 1 303 1 EPE HEP . M 4 CL B 1 304 10 CL CLO . N 5 2NV B 1 305 2 2NV JEF . O 5 2NV B 1 306 3 2NV JEF . P 5 2NV B 1 307 4 2NV JEF . Q 5 2NV B 1 308 5 2NV JEF . R 7 HOH A 1 401 14 HOH HOH . R 7 HOH A 2 402 74 HOH HOH . R 7 HOH A 3 403 305 HOH HOH . R 7 HOH A 4 404 139 HOH HOH . R 7 HOH A 5 405 123 HOH HOH . R 7 HOH A 6 406 153 HOH HOH . R 7 HOH A 7 407 36 HOH HOH . R 7 HOH A 8 408 46 HOH HOH . R 7 HOH A 9 409 39 HOH HOH . R 7 HOH A 10 410 67 HOH HOH . R 7 HOH A 11 411 59 HOH HOH . R 7 HOH A 12 412 140 HOH HOH . R 7 HOH A 13 413 254 HOH HOH . R 7 HOH A 14 414 307 HOH HOH . R 7 HOH A 15 415 170 HOH HOH . R 7 HOH A 16 416 285 HOH HOH . R 7 HOH A 17 417 1 HOH HOH . R 7 HOH A 18 418 10 HOH HOH . R 7 HOH A 19 419 11 HOH HOH . R 7 HOH A 20 420 12 HOH HOH . R 7 HOH A 21 421 16 HOH HOH . R 7 HOH A 22 422 17 HOH HOH . R 7 HOH A 23 423 18 HOH HOH . R 7 HOH A 24 424 20 HOH HOH . R 7 HOH A 25 425 23 HOH HOH . R 7 HOH A 26 426 24 HOH HOH . R 7 HOH A 27 427 25 HOH HOH . R 7 HOH A 28 428 28 HOH HOH . R 7 HOH A 29 429 32 HOH HOH . R 7 HOH A 30 430 37 HOH HOH . R 7 HOH A 31 431 38 HOH HOH . R 7 HOH A 32 432 42 HOH HOH . R 7 HOH A 33 433 53 HOH HOH . R 7 HOH A 34 434 56 HOH HOH . R 7 HOH A 35 435 57 HOH HOH . R 7 HOH A 36 436 61 HOH HOH . R 7 HOH A 37 437 66 HOH HOH . R 7 HOH A 38 438 73 HOH HOH . R 7 HOH A 39 439 77 HOH HOH . R 7 HOH A 40 440 81 HOH HOH . R 7 HOH A 41 441 84 HOH HOH . R 7 HOH A 42 442 91 HOH HOH . R 7 HOH A 43 443 92 HOH HOH . R 7 HOH A 44 444 99 HOH HOH . R 7 HOH A 45 445 102 HOH HOH . R 7 HOH A 46 446 103 HOH HOH . R 7 HOH A 47 447 115 HOH HOH . R 7 HOH A 48 448 122 HOH HOH . R 7 HOH A 49 449 125 HOH HOH . R 7 HOH A 50 450 127 HOH HOH . R 7 HOH A 51 451 131 HOH HOH . R 7 HOH A 52 452 135 HOH HOH . R 7 HOH A 53 453 167 HOH HOH . R 7 HOH A 54 454 172 HOH HOH . R 7 HOH A 55 455 177 HOH HOH . R 7 HOH A 56 456 178 HOH HOH . R 7 HOH A 57 457 183 HOH HOH . R 7 HOH A 58 458 198 HOH HOH . R 7 HOH A 59 459 201 HOH HOH . R 7 HOH A 60 460 228 HOH HOH . R 7 HOH A 61 461 293 HOH HOH . R 7 HOH A 62 462 308 HOH HOH . S 7 HOH B 1 401 33 HOH HOH . S 7 HOH B 2 402 165 HOH HOH . S 7 HOH B 3 403 129 HOH HOH . S 7 HOH B 4 404 113 HOH HOH . S 7 HOH B 5 405 62 HOH HOH . S 7 HOH B 6 406 114 HOH HOH . S 7 HOH B 7 407 90 HOH HOH . S 7 HOH B 8 408 30 HOH HOH . S 7 HOH B 9 409 193 HOH HOH . S 7 HOH B 10 410 106 HOH HOH . S 7 HOH B 11 411 237 HOH HOH . S 7 HOH B 12 412 63 HOH HOH . S 7 HOH B 13 413 6 HOH HOH . S 7 HOH B 14 414 2 HOH HOH . S 7 HOH B 15 415 134 HOH HOH . S 7 HOH B 16 416 133 HOH HOH . S 7 HOH B 17 417 52 HOH HOH . S 7 HOH B 18 418 105 HOH HOH . S 7 HOH B 19 419 49 HOH HOH . S 7 HOH B 20 420 3 HOH HOH . S 7 HOH B 21 421 4 HOH HOH . S 7 HOH B 22 422 5 HOH HOH . S 7 HOH B 23 423 7 HOH HOH . S 7 HOH B 24 424 9 HOH HOH . S 7 HOH B 25 425 13 HOH HOH . S 7 HOH B 26 426 15 HOH HOH . S 7 HOH B 27 427 19 HOH HOH . S 7 HOH B 28 428 21 HOH HOH . S 7 HOH B 29 429 22 HOH HOH . S 7 HOH B 30 430 27 HOH HOH . S 7 HOH B 31 431 29 HOH HOH . S 7 HOH B 32 432 31 HOH HOH . S 7 HOH B 33 433 34 HOH HOH . S 7 HOH B 34 434 35 HOH HOH . S 7 HOH B 35 435 41 HOH HOH . S 7 HOH B 36 436 43 HOH HOH . S 7 HOH B 37 437 44 HOH HOH . S 7 HOH B 38 438 45 HOH HOH . S 7 HOH B 39 439 47 HOH HOH . S 7 HOH B 40 440 48 HOH HOH . S 7 HOH B 41 441 51 HOH HOH . S 7 HOH B 42 442 58 HOH HOH . S 7 HOH B 43 443 64 HOH HOH . S 7 HOH B 44 444 65 HOH HOH . S 7 HOH B 45 445 69 HOH HOH . S 7 HOH B 46 446 70 HOH HOH . S 7 HOH B 47 447 71 HOH HOH . S 7 HOH B 48 448 78 HOH HOH . S 7 HOH B 49 449 80 HOH HOH . S 7 HOH B 50 450 83 HOH HOH . S 7 HOH B 51 451 89 HOH HOH . S 7 HOH B 52 452 97 HOH HOH . S 7 HOH B 53 453 108 HOH HOH . S 7 HOH B 54 454 110 HOH HOH . S 7 HOH B 55 455 117 HOH HOH . S 7 HOH B 56 456 119 HOH HOH . S 7 HOH B 57 457 130 HOH HOH . S 7 HOH B 58 458 141 HOH HOH . S 7 HOH B 59 459 142 HOH HOH . S 7 HOH B 60 460 143 HOH HOH . S 7 HOH B 61 461 144 HOH HOH . S 7 HOH B 62 462 152 HOH HOH . S 7 HOH B 63 463 154 HOH HOH . S 7 HOH B 64 464 160 HOH HOH . S 7 HOH B 65 465 164 HOH HOH . S 7 HOH B 66 466 168 HOH HOH . S 7 HOH B 67 467 169 HOH HOH . S 7 HOH B 68 468 175 HOH HOH . S 7 HOH B 69 469 179 HOH HOH . S 7 HOH B 70 470 211 HOH HOH . S 7 HOH B 71 471 235 HOH HOH . S 7 HOH B 72 472 239 HOH HOH . S 7 HOH B 73 473 268 HOH HOH . S 7 HOH B 74 474 309 HOH HOH . S 7 HOH B 75 475 310 HOH HOH . S 7 HOH B 76 476 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . J 2 7.484 0.028 35.362 1 23.77 ? PA NAD 301 B 1 HETATM 2 O O1A NAD . . . J 2 6.46 -1.098 35.999 1 32.45 ? O1A NAD 301 B 1 HETATM 3 O O2A NAD . . . J 2 8.832 -0.025 35.94 1 23.93 ? O2A NAD 301 B 1 HETATM 4 O O5B NAD . . . J 2 7.506 -0.146 33.72 1 29.23 ? O5B NAD 301 B 1 HETATM 5 C C5B NAD . . . J 2 8.645 0.306 33.03 1 17.85 ? C5B NAD 301 B 1 HETATM 6 C C4B NAD . . . J 2 9.154 -0.798 32.09 1 20.91 ? C4B NAD 301 B 1 HETATM 7 O O4B NAD . . . J 2 10.298 -0.381 31.259 1 25.23 ? O4B NAD 301 B 1 HETATM 8 C C3B NAD . . . J 2 9.66 -2.14 32.827 1 24.69 ? C3B NAD 301 B 1 HETATM 9 O O3B NAD . . . J 2 8.859 -3.28 32.602 1 26.59 ? O3B NAD 301 B 1 HETATM 10 C C2B NAD . . . J 2 11.088 -2.229 32.3 1 20.34 ? C2B NAD 301 B 1 HETATM 11 O O2B NAD . . . J 2 11.653 -3.509 32.282 1 25.98 ? O2B NAD 301 B 1 HETATM 12 C C1B NAD . . . J 2 10.885 -1.601 30.969 1 18.76 ? C1B NAD 301 B 1 HETATM 13 N N9A NAD . . . J 2 12.211 -1.356 30.397 1 22.42 ? N9A NAD 301 B 1 HETATM 14 C C8A NAD . . . J 2 13.242 -0.621 30.977 1 26.37 ? C8A NAD 301 B 1 HETATM 15 N N7A NAD . . . J 2 14.387 -0.746 30.118 1 22.6 ? N7A NAD 301 B 1 HETATM 16 C C5A NAD . . . J 2 14.006 -1.572 29.022 1 22.58 ? C5A NAD 301 B 1 HETATM 17 C C6A NAD . . . J 2 14.717 -2.031 27.885 1 20.36 ? C6A NAD 301 B 1 HETATM 18 N N6A NAD . . . J 2 16.117 -1.662 27.735 1 22.81 ? N6A NAD 301 B 1 HETATM 19 N N1A NAD . . . J 2 14.111 -2.808 26.98 1 27.58 ? N1A NAD 301 B 1 HETATM 20 C C2A NAD . . . J 2 12.755 -3.184 27.147 1 28.41 ? C2A NAD 301 B 1 HETATM 21 N N3A NAD . . . J 2 12.037 -2.738 28.283 1 23.94 ? N3A NAD 301 B 1 HETATM 22 C C4A NAD . . . J 2 12.667 -1.946 29.182 1 21.54 ? C4A NAD 301 B 1 HETATM 23 O O3 NAD . . . J 2 6.917 1.544 35.688 1 24.28 ? O3 NAD 301 B 1 HETATM 24 P PN NAD . . . J 2 5.638 2.19 34.864 1 21.33 ? PN NAD 301 B 1 HETATM 25 O O1N NAD . . . J 2 4.402 1.134 34.64 1 19.53 ? O1N NAD 301 B 1 HETATM 26 O O2N NAD . . . J 2 5.183 3.328 35.655 1 25.86 ? O2N NAD 301 B 1 HETATM 27 O O5D NAD . . . J 2 6.198 2.714 33.412 1 24.55 ? O5D NAD 301 B 1 HETATM 28 C C5D NAD . . . J 2 5.593 2.267 32.215 1 25.64 ? C5D NAD 301 B 1 HETATM 29 C C4D NAD . . . J 2 5.438 3.455 31.252 1 14.61 ? C4D NAD 301 B 1 HETATM 30 O O4D NAD . . . J 2 4.493 4.452 31.716 1 18.59 ? O4D NAD 301 B 1 HETATM 31 C C3D NAD . . . J 2 6.739 4.318 31.003 1 20.8 ? C3D NAD 301 B 1 HETATM 32 O O3D NAD . . . J 2 6.988 4.782 29.696 1 22.26 ? O3D NAD 301 B 1 HETATM 33 C C2D NAD . . . J 2 6.587 5.453 32.041 1 24.11 ? C2D NAD 301 B 1 HETATM 34 O O2D NAD . . . J 2 7.478 6.511 31.859 1 19.94 ? O2D NAD 301 B 1 HETATM 35 C C1D NAD . . . J 2 5.126 5.707 31.794 1 24.36 ? C1D NAD 301 B 1 HETATM 36 N N1N NAD . . . J 2 4.431 6.538 32.808 1 25.28 ? N1N NAD 301 B 1 HETATM 37 C C2N NAD . . . J 2 4.449 6.206 34.218 1 24.43 ? C2N NAD 301 B 1 HETATM 38 C C3N NAD . . . J 2 3.674 7.035 35.121 1 24.83 ? C3N NAD 301 B 1 HETATM 39 C C7N NAD . . . J 2 3.61 6.703 36.611 1 21.61 ? C7N NAD 301 B 1 HETATM 40 O O7N NAD . . . J 2 3.14 7.489 37.356 1 26.35 ? O7N NAD 301 B 1 HETATM 41 N N7N NAD . . . J 2 3.931 5.347 37.024 1 19.66 ? N7N NAD 301 B 1 HETATM 42 C C4N NAD . . . J 2 2.869 8.194 34.639 1 22.65 ? C4N NAD 301 B 1 HETATM 43 C C5N NAD . . . J 2 2.863 8.5 33.236 1 18.85 ? C5N NAD 301 B 1 HETATM 44 C C6N NAD . . . J 2 3.638 7.688 32.32 1 16.19 ? C6N NAD 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #