data_4OXN # _model_server_result.job_id loY66gnPyytOITQGQDy-Dg _model_server_result.datetime_utc '2024-10-13 22:20:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4OXN # _exptl.entry_id 4OXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.422 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-amino-2-methylphenoxy)-2-hexyl-4-hydroxy-1-methylpyridinium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OXN _cell.length_a 88.952 _cell.length_b 97.15 _cell.length_c 187.009 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OXN _symmetry.cell_setting . _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 48.575 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # _chem_comp.formula 'C19 H26 N2 O2' _chem_comp.formula_weight 314.422 _chem_comp.id 1S5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-amino-2-methylphenoxy)-2-hexyl-4-hydroxy-1-methylpyridinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAB 1S5 doub 1 n n CAB CAC 1S5 sing 2 n n CAB CAH 1S5 sing 3 n n CAC OAD 1S5 sing 4 n n CAC CAI 1S5 doub 5 n n OAD CAE 1S5 sing 6 n n CAE CAF 1S5 doub 7 n y CAE CAJ 1S5 sing 8 n y CAF CAG 1S5 sing 9 n n CAF CAK 1S5 sing 10 n y CAH CAL 1S5 doub 11 n n CAI NAM 1S5 sing 12 n n CAJ CAN 1S5 doub 13 n y CAK CAO 1S5 doub 14 n y CAL NAM 1S5 sing 15 n n CAL CAQ 1S5 sing 16 n n NAM CAR 1S5 sing 17 n n CAN CAO 1S5 sing 18 n y CAO NAP 1S5 sing 19 n n CAQ CAS 1S5 sing 20 n n CAS CAT 1S5 sing 21 n n CAT CAU 1S5 sing 22 n n CAU CAV 1S5 sing 23 n n CAV CAW 1S5 sing 24 n n CAG HAG 1S5 sing 25 n n CAG HAGA 1S5 sing 26 n n CAG HAGB 1S5 sing 27 n n CAH HAH 1S5 sing 28 n n CAI HAI 1S5 sing 29 n n CAJ HAJ 1S5 sing 30 n n CAK HAK 1S5 sing 31 n n CAN HAN 1S5 sing 32 n n NAP HNAP 1S5 sing 33 n n NAP HNAA 1S5 sing 34 n n CAQ HAQ 1S5 sing 35 n n CAQ HAQA 1S5 sing 36 n n CAR HAR 1S5 sing 37 n n CAR HARA 1S5 sing 38 n n CAR HARB 1S5 sing 39 n n CAS HAS 1S5 sing 40 n n CAS HASA 1S5 sing 41 n n CAT HAT 1S5 sing 42 n n CAT HATA 1S5 sing 43 n n CAU HAU 1S5 sing 44 n n CAU HAUA 1S5 sing 45 n n CAV HAV 1S5 sing 46 n n CAV HAVA 1S5 sing 47 n n CAW HAW 1S5 sing 48 n n CAW HAWA 1S5 sing 49 n n CAW HAWB 1S5 sing 50 n n # _atom_sites.entry_id 4OXN _atom_sites.fract_transf_matrix[1][1] 0.011242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 300 NAD NAD . D 3 1S5 A 1 302 301 1S5 55P . E 4 CL A 1 303 9 CL CLO . F 5 2NV A 1 304 6 2NV JEF . G 5 2NV A 1 305 7 2NV JEF . H 5 2NV A 1 306 8 2NV JEF . I 5 2NV A 1 307 9 2NV JEF . J 2 NAD B 1 301 300 NAD NAD . K 3 1S5 B 1 302 301 1S5 55P . L 6 EPE B 1 303 1 EPE HEP . M 4 CL B 1 304 10 CL CLO . N 5 2NV B 1 305 2 2NV JEF . O 5 2NV B 1 306 3 2NV JEF . P 5 2NV B 1 307 4 2NV JEF . Q 5 2NV B 1 308 5 2NV JEF . R 7 HOH A 1 401 14 HOH HOH . R 7 HOH A 2 402 74 HOH HOH . R 7 HOH A 3 403 305 HOH HOH . R 7 HOH A 4 404 139 HOH HOH . R 7 HOH A 5 405 123 HOH HOH . R 7 HOH A 6 406 153 HOH HOH . R 7 HOH A 7 407 36 HOH HOH . R 7 HOH A 8 408 46 HOH HOH . R 7 HOH A 9 409 39 HOH HOH . R 7 HOH A 10 410 67 HOH HOH . R 7 HOH A 11 411 59 HOH HOH . R 7 HOH A 12 412 140 HOH HOH . R 7 HOH A 13 413 254 HOH HOH . R 7 HOH A 14 414 307 HOH HOH . R 7 HOH A 15 415 170 HOH HOH . R 7 HOH A 16 416 285 HOH HOH . R 7 HOH A 17 417 1 HOH HOH . R 7 HOH A 18 418 10 HOH HOH . R 7 HOH A 19 419 11 HOH HOH . R 7 HOH A 20 420 12 HOH HOH . R 7 HOH A 21 421 16 HOH HOH . R 7 HOH A 22 422 17 HOH HOH . R 7 HOH A 23 423 18 HOH HOH . R 7 HOH A 24 424 20 HOH HOH . R 7 HOH A 25 425 23 HOH HOH . R 7 HOH A 26 426 24 HOH HOH . R 7 HOH A 27 427 25 HOH HOH . R 7 HOH A 28 428 28 HOH HOH . R 7 HOH A 29 429 32 HOH HOH . R 7 HOH A 30 430 37 HOH HOH . R 7 HOH A 31 431 38 HOH HOH . R 7 HOH A 32 432 42 HOH HOH . R 7 HOH A 33 433 53 HOH HOH . R 7 HOH A 34 434 56 HOH HOH . R 7 HOH A 35 435 57 HOH HOH . R 7 HOH A 36 436 61 HOH HOH . R 7 HOH A 37 437 66 HOH HOH . R 7 HOH A 38 438 73 HOH HOH . R 7 HOH A 39 439 77 HOH HOH . R 7 HOH A 40 440 81 HOH HOH . R 7 HOH A 41 441 84 HOH HOH . R 7 HOH A 42 442 91 HOH HOH . R 7 HOH A 43 443 92 HOH HOH . R 7 HOH A 44 444 99 HOH HOH . R 7 HOH A 45 445 102 HOH HOH . R 7 HOH A 46 446 103 HOH HOH . R 7 HOH A 47 447 115 HOH HOH . R 7 HOH A 48 448 122 HOH HOH . R 7 HOH A 49 449 125 HOH HOH . R 7 HOH A 50 450 127 HOH HOH . R 7 HOH A 51 451 131 HOH HOH . R 7 HOH A 52 452 135 HOH HOH . R 7 HOH A 53 453 167 HOH HOH . R 7 HOH A 54 454 172 HOH HOH . R 7 HOH A 55 455 177 HOH HOH . R 7 HOH A 56 456 178 HOH HOH . R 7 HOH A 57 457 183 HOH HOH . R 7 HOH A 58 458 198 HOH HOH . R 7 HOH A 59 459 201 HOH HOH . R 7 HOH A 60 460 228 HOH HOH . R 7 HOH A 61 461 293 HOH HOH . R 7 HOH A 62 462 308 HOH HOH . S 7 HOH B 1 401 33 HOH HOH . S 7 HOH B 2 402 165 HOH HOH . S 7 HOH B 3 403 129 HOH HOH . S 7 HOH B 4 404 113 HOH HOH . S 7 HOH B 5 405 62 HOH HOH . S 7 HOH B 6 406 114 HOH HOH . S 7 HOH B 7 407 90 HOH HOH . S 7 HOH B 8 408 30 HOH HOH . S 7 HOH B 9 409 193 HOH HOH . S 7 HOH B 10 410 106 HOH HOH . S 7 HOH B 11 411 237 HOH HOH . S 7 HOH B 12 412 63 HOH HOH . S 7 HOH B 13 413 6 HOH HOH . S 7 HOH B 14 414 2 HOH HOH . S 7 HOH B 15 415 134 HOH HOH . S 7 HOH B 16 416 133 HOH HOH . S 7 HOH B 17 417 52 HOH HOH . S 7 HOH B 18 418 105 HOH HOH . S 7 HOH B 19 419 49 HOH HOH . S 7 HOH B 20 420 3 HOH HOH . S 7 HOH B 21 421 4 HOH HOH . S 7 HOH B 22 422 5 HOH HOH . S 7 HOH B 23 423 7 HOH HOH . S 7 HOH B 24 424 9 HOH HOH . S 7 HOH B 25 425 13 HOH HOH . S 7 HOH B 26 426 15 HOH HOH . S 7 HOH B 27 427 19 HOH HOH . S 7 HOH B 28 428 21 HOH HOH . S 7 HOH B 29 429 22 HOH HOH . S 7 HOH B 30 430 27 HOH HOH . S 7 HOH B 31 431 29 HOH HOH . S 7 HOH B 32 432 31 HOH HOH . S 7 HOH B 33 433 34 HOH HOH . S 7 HOH B 34 434 35 HOH HOH . S 7 HOH B 35 435 41 HOH HOH . S 7 HOH B 36 436 43 HOH HOH . S 7 HOH B 37 437 44 HOH HOH . S 7 HOH B 38 438 45 HOH HOH . S 7 HOH B 39 439 47 HOH HOH . S 7 HOH B 40 440 48 HOH HOH . S 7 HOH B 41 441 51 HOH HOH . S 7 HOH B 42 442 58 HOH HOH . S 7 HOH B 43 443 64 HOH HOH . S 7 HOH B 44 444 65 HOH HOH . S 7 HOH B 45 445 69 HOH HOH . S 7 HOH B 46 446 70 HOH HOH . S 7 HOH B 47 447 71 HOH HOH . S 7 HOH B 48 448 78 HOH HOH . S 7 HOH B 49 449 80 HOH HOH . S 7 HOH B 50 450 83 HOH HOH . S 7 HOH B 51 451 89 HOH HOH . S 7 HOH B 52 452 97 HOH HOH . S 7 HOH B 53 453 108 HOH HOH . S 7 HOH B 54 454 110 HOH HOH . S 7 HOH B 55 455 117 HOH HOH . S 7 HOH B 56 456 119 HOH HOH . S 7 HOH B 57 457 130 HOH HOH . S 7 HOH B 58 458 141 HOH HOH . S 7 HOH B 59 459 142 HOH HOH . S 7 HOH B 60 460 143 HOH HOH . S 7 HOH B 61 461 144 HOH HOH . S 7 HOH B 62 462 152 HOH HOH . S 7 HOH B 63 463 154 HOH HOH . S 7 HOH B 64 464 160 HOH HOH . S 7 HOH B 65 465 164 HOH HOH . S 7 HOH B 66 466 168 HOH HOH . S 7 HOH B 67 467 169 HOH HOH . S 7 HOH B 68 468 175 HOH HOH . S 7 HOH B 69 469 179 HOH HOH . S 7 HOH B 70 470 211 HOH HOH . S 7 HOH B 71 471 235 HOH HOH . S 7 HOH B 72 472 239 HOH HOH . S 7 HOH B 73 473 268 HOH HOH . S 7 HOH B 74 474 309 HOH HOH . S 7 HOH B 75 475 310 HOH HOH . S 7 HOH B 76 476 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 1S5 . . . D 3 -17.613 24.841 12.822 1 21.95 ? OAA 1S5 302 A 1 HETATM 2 C CAB 1S5 . . . D 3 -17.613 24.457 11.493 1 25.93 ? CAB 1S5 302 A 1 HETATM 3 C CAC 1S5 . . . D 3 -18.8 24.364 10.811 1 28.06 ? CAC 1S5 302 A 1 HETATM 4 O OAD 1S5 . . . D 3 -20.028 24.546 11.465 1 29.97 ? OAD 1S5 302 A 1 HETATM 5 C CAE 1S5 . . . D 3 -20.644 25.786 11.273 1 25.37 ? CAE 1S5 302 A 1 HETATM 6 C CAF 1S5 . . . D 3 -21.994 25.909 11.614 1 27.84 ? CAF 1S5 302 A 1 HETATM 7 C CAG 1S5 . . . D 3 -22.733 24.686 12.166 1 20.04 ? CAG 1S5 302 A 1 HETATM 8 C CAH 1S5 . . . D 3 -16.42 24.217 10.87 1 23.72 ? CAH 1S5 302 A 1 HETATM 9 C CAI 1S5 . . . D 3 -18.79 23.996 9.461 1 28.8 ? CAI 1S5 302 A 1 HETATM 10 C CAJ 1S5 . . . D 3 -19.942 26.894 10.777 1 28.95 ? CAJ 1S5 302 A 1 HETATM 11 C CAK 1S5 . . . D 3 -22.668 27.136 11.448 1 22.71 ? CAK 1S5 302 A 1 HETATM 12 C CAL 1S5 . . . D 3 -16.419 23.854 9.52 1 29.06 ? CAL 1S5 302 A 1 HETATM 13 N NAM 1S5 . . . D 3 -17.607 23.698 8.847 1 29.96 ? NAM 1S5 302 A 1 HETATM 14 C CAN 1S5 . . . D 3 -20.6 28.117 10.629 1 20.09 ? CAN 1S5 302 A 1 HETATM 15 C CAO 1S5 . . . D 3 -21.961 28.241 10.96 1 25.1 ? CAO 1S5 302 A 1 HETATM 16 N NAP 1S5 . . . D 3 -22.639 29.513 10.758 1 21.63 ? NAP 1S5 302 A 1 HETATM 17 C CAQ 1S5 . . . D 3 -15.093 23.649 8.799 1 31.54 ? CAQ 1S5 302 A 1 HETATM 18 C CAR 1S5 . . . D 3 -17.63 23.295 7.454 1 21.85 ? CAR 1S5 302 A 1 HETATM 19 C CAS 1S5 . . . D 3 -14.38 24.938 8.386 1 32.03 ? CAS 1S5 302 A 1 HETATM 20 C CAT 1S5 . . . D 3 -13.25 24.867 7.362 1 31.73 ? CAT 1S5 302 A 1 HETATM 21 C CAU 1S5 . . . D 3 -12.28 26.05 7.288 1 35.96 ? CAU 1S5 302 A 1 HETATM 22 C CAV 1S5 . . . D 3 -11.191 25.979 6.218 1 47.59 ? CAV 1S5 302 A 1 HETATM 23 C CAW 1S5 . . . D 3 -9.744 26.31 6.577 1 47.36 ? CAW 1S5 302 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #