data_4OXN # _model_server_result.job_id ZYx--BREzVpNDVinOKi9LA _model_server_result.datetime_utc '2024-11-27 12:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 4OXN # _exptl.entry_id 4OXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.373 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-pentaoxaoctadecan-17-amine _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OXN _cell.length_a 88.952 _cell.length_b 97.15 _cell.length_c 187.009 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OXN _symmetry.cell_setting . _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 48.575 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # _chem_comp.formula 'C13 H29 N O5' _chem_comp.formula_weight 279.373 _chem_comp.id 2NV _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-pentaoxaoctadecan-17-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Jeffamine ED-2001' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 2NV sing 51 n n N1 HN1 2NV sing 52 n n N1 HN1A 2NV sing 53 n n C3 C2 2NV sing 54 n n C2 C2A 2NV sing 55 n n C2 H2 2NV sing 56 n n O4 C3 2NV sing 57 n n C3 H3 2NV sing 58 n n C3 H3A 2NV sing 59 n n C5 O4 2NV sing 60 n n C5 C6 2NV sing 61 n n C5 H5 2NV sing 62 n n C5 H5A 2NV sing 63 n n O7 C6 2NV sing 64 n n C6 H6 2NV sing 65 n n C6 H6A 2NV sing 66 n n O7 C8 2NV sing 67 n n C8 C9 2NV sing 68 n n C8 H8 2NV sing 69 n n C8 H8A 2NV sing 70 n n O10 C9 2NV sing 71 n n C9 H9 2NV sing 72 n n C9 H9A 2NV sing 73 n n O10 C11 2NV sing 74 n n C11 C12 2NV sing 75 n n C11 H11 2NV sing 76 n n C11 H11A 2NV sing 77 n n C12 O13 2NV sing 78 n n C12 H12 2NV sing 79 n n C12 H12A 2NV sing 80 n n O13 C14 2NV sing 81 n n C14 C15 2NV sing 82 n n C14 H14 2NV sing 83 n n C14 H14A 2NV sing 84 n n C15 O16 2NV sing 85 n n C15 H15 2NV sing 86 n n C15 H15A 2NV sing 87 n n O16 C17 2NV sing 88 n n C17 C18 2NV sing 89 n n C17 H17 2NV sing 90 n n C17 H17A 2NV sing 91 n n C18 H18 2NV sing 92 n n C18 H18A 2NV sing 93 n n C18 H18B 2NV sing 94 n n C2A H2A 2NV sing 95 n n C2A H2AA 2NV sing 96 n n C2A H2AB 2NV sing 97 n n # _atom_sites.entry_id 4OXN _atom_sites.fract_transf_matrix[1][1] 0.011242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 300 NAD NAD . D 3 1S5 A 1 302 301 1S5 55P . E 4 CL A 1 303 9 CL CLO . F 5 2NV A 1 304 6 2NV JEF . G 5 2NV A 1 305 7 2NV JEF . H 5 2NV A 1 306 8 2NV JEF . I 5 2NV A 1 307 9 2NV JEF . J 2 NAD B 1 301 300 NAD NAD . K 3 1S5 B 1 302 301 1S5 55P . L 6 EPE B 1 303 1 EPE HEP . M 4 CL B 1 304 10 CL CLO . N 5 2NV B 1 305 2 2NV JEF . O 5 2NV B 1 306 3 2NV JEF . P 5 2NV B 1 307 4 2NV JEF . Q 5 2NV B 1 308 5 2NV JEF . R 7 HOH A 1 401 14 HOH HOH . R 7 HOH A 2 402 74 HOH HOH . R 7 HOH A 3 403 305 HOH HOH . R 7 HOH A 4 404 139 HOH HOH . R 7 HOH A 5 405 123 HOH HOH . R 7 HOH A 6 406 153 HOH HOH . R 7 HOH A 7 407 36 HOH HOH . R 7 HOH A 8 408 46 HOH HOH . R 7 HOH A 9 409 39 HOH HOH . R 7 HOH A 10 410 67 HOH HOH . R 7 HOH A 11 411 59 HOH HOH . R 7 HOH A 12 412 140 HOH HOH . R 7 HOH A 13 413 254 HOH HOH . R 7 HOH A 14 414 307 HOH HOH . R 7 HOH A 15 415 170 HOH HOH . R 7 HOH A 16 416 285 HOH HOH . R 7 HOH A 17 417 1 HOH HOH . R 7 HOH A 18 418 10 HOH HOH . R 7 HOH A 19 419 11 HOH HOH . R 7 HOH A 20 420 12 HOH HOH . R 7 HOH A 21 421 16 HOH HOH . R 7 HOH A 22 422 17 HOH HOH . R 7 HOH A 23 423 18 HOH HOH . R 7 HOH A 24 424 20 HOH HOH . R 7 HOH A 25 425 23 HOH HOH . R 7 HOH A 26 426 24 HOH HOH . R 7 HOH A 27 427 25 HOH HOH . R 7 HOH A 28 428 28 HOH HOH . R 7 HOH A 29 429 32 HOH HOH . R 7 HOH A 30 430 37 HOH HOH . R 7 HOH A 31 431 38 HOH HOH . R 7 HOH A 32 432 42 HOH HOH . R 7 HOH A 33 433 53 HOH HOH . R 7 HOH A 34 434 56 HOH HOH . R 7 HOH A 35 435 57 HOH HOH . R 7 HOH A 36 436 61 HOH HOH . R 7 HOH A 37 437 66 HOH HOH . R 7 HOH A 38 438 73 HOH HOH . R 7 HOH A 39 439 77 HOH HOH . R 7 HOH A 40 440 81 HOH HOH . R 7 HOH A 41 441 84 HOH HOH . R 7 HOH A 42 442 91 HOH HOH . R 7 HOH A 43 443 92 HOH HOH . R 7 HOH A 44 444 99 HOH HOH . R 7 HOH A 45 445 102 HOH HOH . R 7 HOH A 46 446 103 HOH HOH . R 7 HOH A 47 447 115 HOH HOH . R 7 HOH A 48 448 122 HOH HOH . R 7 HOH A 49 449 125 HOH HOH . R 7 HOH A 50 450 127 HOH HOH . R 7 HOH A 51 451 131 HOH HOH . R 7 HOH A 52 452 135 HOH HOH . R 7 HOH A 53 453 167 HOH HOH . R 7 HOH A 54 454 172 HOH HOH . R 7 HOH A 55 455 177 HOH HOH . R 7 HOH A 56 456 178 HOH HOH . R 7 HOH A 57 457 183 HOH HOH . R 7 HOH A 58 458 198 HOH HOH . R 7 HOH A 59 459 201 HOH HOH . R 7 HOH A 60 460 228 HOH HOH . R 7 HOH A 61 461 293 HOH HOH . R 7 HOH A 62 462 308 HOH HOH . S 7 HOH B 1 401 33 HOH HOH . S 7 HOH B 2 402 165 HOH HOH . S 7 HOH B 3 403 129 HOH HOH . S 7 HOH B 4 404 113 HOH HOH . S 7 HOH B 5 405 62 HOH HOH . S 7 HOH B 6 406 114 HOH HOH . S 7 HOH B 7 407 90 HOH HOH . S 7 HOH B 8 408 30 HOH HOH . S 7 HOH B 9 409 193 HOH HOH . S 7 HOH B 10 410 106 HOH HOH . S 7 HOH B 11 411 237 HOH HOH . S 7 HOH B 12 412 63 HOH HOH . S 7 HOH B 13 413 6 HOH HOH . S 7 HOH B 14 414 2 HOH HOH . S 7 HOH B 15 415 134 HOH HOH . S 7 HOH B 16 416 133 HOH HOH . S 7 HOH B 17 417 52 HOH HOH . S 7 HOH B 18 418 105 HOH HOH . S 7 HOH B 19 419 49 HOH HOH . S 7 HOH B 20 420 3 HOH HOH . S 7 HOH B 21 421 4 HOH HOH . S 7 HOH B 22 422 5 HOH HOH . S 7 HOH B 23 423 7 HOH HOH . S 7 HOH B 24 424 9 HOH HOH . S 7 HOH B 25 425 13 HOH HOH . S 7 HOH B 26 426 15 HOH HOH . S 7 HOH B 27 427 19 HOH HOH . S 7 HOH B 28 428 21 HOH HOH . S 7 HOH B 29 429 22 HOH HOH . S 7 HOH B 30 430 27 HOH HOH . S 7 HOH B 31 431 29 HOH HOH . S 7 HOH B 32 432 31 HOH HOH . S 7 HOH B 33 433 34 HOH HOH . S 7 HOH B 34 434 35 HOH HOH . S 7 HOH B 35 435 41 HOH HOH . S 7 HOH B 36 436 43 HOH HOH . S 7 HOH B 37 437 44 HOH HOH . S 7 HOH B 38 438 45 HOH HOH . S 7 HOH B 39 439 47 HOH HOH . S 7 HOH B 40 440 48 HOH HOH . S 7 HOH B 41 441 51 HOH HOH . S 7 HOH B 42 442 58 HOH HOH . S 7 HOH B 43 443 64 HOH HOH . S 7 HOH B 44 444 65 HOH HOH . S 7 HOH B 45 445 69 HOH HOH . S 7 HOH B 46 446 70 HOH HOH . S 7 HOH B 47 447 71 HOH HOH . S 7 HOH B 48 448 78 HOH HOH . S 7 HOH B 49 449 80 HOH HOH . S 7 HOH B 50 450 83 HOH HOH . S 7 HOH B 51 451 89 HOH HOH . S 7 HOH B 52 452 97 HOH HOH . S 7 HOH B 53 453 108 HOH HOH . S 7 HOH B 54 454 110 HOH HOH . S 7 HOH B 55 455 117 HOH HOH . S 7 HOH B 56 456 119 HOH HOH . S 7 HOH B 57 457 130 HOH HOH . S 7 HOH B 58 458 141 HOH HOH . S 7 HOH B 59 459 142 HOH HOH . S 7 HOH B 60 460 143 HOH HOH . S 7 HOH B 61 461 144 HOH HOH . S 7 HOH B 62 462 152 HOH HOH . S 7 HOH B 63 463 154 HOH HOH . S 7 HOH B 64 464 160 HOH HOH . S 7 HOH B 65 465 164 HOH HOH . S 7 HOH B 66 466 168 HOH HOH . S 7 HOH B 67 467 169 HOH HOH . S 7 HOH B 68 468 175 HOH HOH . S 7 HOH B 69 469 179 HOH HOH . S 7 HOH B 70 470 211 HOH HOH . S 7 HOH B 71 471 235 HOH HOH . S 7 HOH B 72 472 239 HOH HOH . S 7 HOH B 73 473 268 HOH HOH . S 7 HOH B 74 474 309 HOH HOH . S 7 HOH B 75 475 310 HOH HOH . S 7 HOH B 76 476 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 2NV . . . I 5 -17.459 -1.449 15.401 1 67.27 ? C2 2NV 307 A 1 HETATM 2 C C3 2NV . . . I 5 -16.593 -2.508 16.082 1 71.67 ? C3 2NV 307 A 1 HETATM 3 O O4 2NV . . . I 5 -16.595 -2.324 17.503 1 74.45 ? O4 2NV 307 A 1 HETATM 4 C C5 2NV . . . I 5 -16.89 -3.541 18.194 1 71.46 ? C5 2NV 307 A 1 HETATM 5 C C6 2NV . . . I 5 -16.601 -3.441 19.693 1 65.45 ? C6 2NV 307 A 1 HETATM 6 O O7 2NV . . . I 5 -17.626 -2.731 20.4 1 64.38 ? O7 2NV 307 A 1 HETATM 7 C C8 2NV . . . I 5 -18.018 -3.428 21.591 1 66.06 ? C8 2NV 307 A 1 HETATM 8 C C9 2NV . . . I 5 -17.795 -2.559 22.828 1 64.91 ? C9 2NV 307 A 1 HETATM 9 O O10 2NV . . . I 5 -18.125 -3.258 24.034 1 63.52 ? O10 2NV 307 A 1 HETATM 10 C C11 2NV . . . I 5 -17.416 -2.722 25.154 1 60.58 ? C11 2NV 307 A 1 HETATM 11 C C12 2NV . . . I 5 -18.158 -2.951 26.471 1 62.23 ? C12 2NV 307 A 1 HETATM 12 O O13 2NV . . . I 5 -18.528 -1.681 27.017 1 61.52 ? O13 2NV 307 A 1 HETATM 13 C C14 2NV . . . I 5 -18.542 -1.663 28.446 1 58.66 ? C14 2NV 307 A 1 HETATM 14 C C2A 2NV . . . I 5 -16.758 -0.805 14.212 1 62.87 ? C2A 2NV 307 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #