data_4OY9 # _model_server_result.job_id BIZ7AVNTDHe_B6q-nFhhvQ _model_server_result.datetime_utc '2024-11-04 23:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4OY9 # _exptl.entry_id 4OY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.05 _cell.angle_gamma 90 _cell.entry_id 4OY9 _cell.length_a 75.381 _cell.length_b 40.949 _cell.length_c 72.409 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 11 A GLU 11 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A OE1 GLU 11 A GLU 11 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A OD1 ASP 67 A ASP 67 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A OE1 GLU 69 A GLU 69 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc5 A OE2 GLU 69 A GLU 69 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 A OE1 GLU 69 A GLU 69 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 A OD1 ASP 100 A ASP 100 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 A O GLN 101 A GLN 101 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc9 A OD1 ASN 102 A ASN 102 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc10 A OD1 ASP 103 A ASP 103 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc11 A OD2 ASP 103 A ASP 103 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 A O HIS 104 A HIS 104 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc13 A OD1 ASP 134 A ASP 134 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc14 A OD2 ASP 134 A ASP 134 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc15 A OD2 ASP 136 A ASP 136 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc16 A OD1 ASP 136 A ASP 136 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc17 A O ASN 143 A ASN 143 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc18 A OD1 ASP 195 A ASP 195 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc19 D CA CA . A CA 403 1_555 E O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc20 D CA CA . A CA 403 1_555 E O HOH . A HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OY9 _atom_sites.fract_transf_matrix[1][1] 0.013266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001877 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 3 HOH A 1 501 146 HOH HOH . E 3 HOH A 2 502 3 HOH HOH . E 3 HOH A 3 503 113 HOH HOH . E 3 HOH A 4 504 228 HOH HOH . E 3 HOH A 5 505 137 HOH HOH . E 3 HOH A 6 506 59 HOH HOH . E 3 HOH A 7 507 35 HOH HOH . E 3 HOH A 8 508 229 HOH HOH . E 3 HOH A 9 509 318 HOH HOH . E 3 HOH A 10 510 121 HOH HOH . E 3 HOH A 11 511 57 HOH HOH . E 3 HOH A 12 512 1 HOH HOH . E 3 HOH A 13 513 203 HOH HOH . E 3 HOH A 14 514 233 HOH HOH . E 3 HOH A 15 515 104 HOH HOH . E 3 HOH A 16 516 167 HOH HOH . E 3 HOH A 17 517 201 HOH HOH . E 3 HOH A 18 518 27 HOH HOH . E 3 HOH A 19 519 75 HOH HOH . E 3 HOH A 20 520 48 HOH HOH . E 3 HOH A 21 521 10 HOH HOH . E 3 HOH A 22 522 88 HOH HOH . E 3 HOH A 23 523 5 HOH HOH . E 3 HOH A 24 524 169 HOH HOH . E 3 HOH A 25 525 336 HOH HOH . E 3 HOH A 26 526 301 HOH HOH . E 3 HOH A 27 527 20 HOH HOH . E 3 HOH A 28 528 30 HOH HOH . E 3 HOH A 29 529 316 HOH HOH . E 3 HOH A 30 530 160 HOH HOH . E 3 HOH A 31 531 323 HOH HOH . E 3 HOH A 32 532 92 HOH HOH . E 3 HOH A 33 533 42 HOH HOH . E 3 HOH A 34 534 2 HOH HOH . E 3 HOH A 35 535 135 HOH HOH . E 3 HOH A 36 536 47 HOH HOH . E 3 HOH A 37 537 8 HOH HOH . E 3 HOH A 38 538 69 HOH HOH . E 3 HOH A 39 539 38 HOH HOH . E 3 HOH A 40 540 172 HOH HOH . E 3 HOH A 41 541 39 HOH HOH . E 3 HOH A 42 542 26 HOH HOH . E 3 HOH A 43 543 174 HOH HOH . E 3 HOH A 44 544 70 HOH HOH . E 3 HOH A 45 545 114 HOH HOH . E 3 HOH A 46 546 33 HOH HOH . E 3 HOH A 47 547 44 HOH HOH . E 3 HOH A 48 548 11 HOH HOH . E 3 HOH A 49 549 72 HOH HOH . E 3 HOH A 50 550 56 HOH HOH . E 3 HOH A 51 551 277 HOH HOH . E 3 HOH A 52 552 139 HOH HOH . E 3 HOH A 53 553 24 HOH HOH . E 3 HOH A 54 554 93 HOH HOH . E 3 HOH A 55 555 68 HOH HOH . E 3 HOH A 56 556 313 HOH HOH . E 3 HOH A 57 557 67 HOH HOH . E 3 HOH A 58 558 37 HOH HOH . E 3 HOH A 59 559 220 HOH HOH . E 3 HOH A 60 560 119 HOH HOH . E 3 HOH A 61 561 36 HOH HOH . E 3 HOH A 62 562 303 HOH HOH . E 3 HOH A 63 563 207 HOH HOH . E 3 HOH A 64 564 211 HOH HOH . E 3 HOH A 65 565 128 HOH HOH . E 3 HOH A 66 566 246 HOH HOH . E 3 HOH A 67 567 125 HOH HOH . E 3 HOH A 68 568 65 HOH HOH . E 3 HOH A 69 569 213 HOH HOH . E 3 HOH A 70 570 7 HOH HOH . E 3 HOH A 71 571 322 HOH HOH . E 3 HOH A 72 572 118 HOH HOH . E 3 HOH A 73 573 279 HOH HOH . E 3 HOH A 74 574 71 HOH HOH . E 3 HOH A 75 575 61 HOH HOH . E 3 HOH A 76 576 4 HOH HOH . E 3 HOH A 77 577 28 HOH HOH . E 3 HOH A 78 578 307 HOH HOH . E 3 HOH A 79 579 82 HOH HOH . E 3 HOH A 80 580 249 HOH HOH . E 3 HOH A 81 581 154 HOH HOH . E 3 HOH A 82 582 19 HOH HOH . E 3 HOH A 83 583 306 HOH HOH . E 3 HOH A 84 584 152 HOH HOH . E 3 HOH A 85 585 320 HOH HOH . E 3 HOH A 86 586 23 HOH HOH . E 3 HOH A 87 587 232 HOH HOH . E 3 HOH A 88 588 130 HOH HOH . E 3 HOH A 89 589 94 HOH HOH . E 3 HOH A 90 590 328 HOH HOH . E 3 HOH A 91 591 215 HOH HOH . E 3 HOH A 92 592 278 HOH HOH . E 3 HOH A 93 593 194 HOH HOH . E 3 HOH A 94 594 55 HOH HOH . E 3 HOH A 95 595 197 HOH HOH . E 3 HOH A 96 596 16 HOH HOH . E 3 HOH A 97 597 315 HOH HOH . E 3 HOH A 98 598 221 HOH HOH . E 3 HOH A 99 599 168 HOH HOH . E 3 HOH A 100 600 226 HOH HOH . E 3 HOH A 101 601 204 HOH HOH . E 3 HOH A 102 602 115 HOH HOH . E 3 HOH A 103 603 293 HOH HOH . E 3 HOH A 104 604 258 HOH HOH . E 3 HOH A 105 605 255 HOH HOH . E 3 HOH A 106 606 253 HOH HOH . E 3 HOH A 107 607 337 HOH HOH . E 3 HOH A 108 608 244 HOH HOH . E 3 HOH A 109 609 319 HOH HOH . E 3 HOH A 110 610 150 HOH HOH . E 3 HOH A 111 611 329 HOH HOH . E 3 HOH A 112 612 324 HOH HOH . E 3 HOH A 113 613 294 HOH HOH . E 3 HOH A 114 614 327 HOH HOH . E 3 HOH A 115 615 156 HOH HOH . E 3 HOH A 116 616 283 HOH HOH . E 3 HOH A 117 617 309 HOH HOH . E 3 HOH A 118 618 159 HOH HOH . E 3 HOH A 119 619 62 HOH HOH . E 3 HOH A 120 620 182 HOH HOH . E 3 HOH A 121 621 250 HOH HOH . E 3 HOH A 122 622 198 HOH HOH . E 3 HOH A 123 623 241 HOH HOH . E 3 HOH A 124 624 297 HOH HOH . E 3 HOH A 125 625 171 HOH HOH . E 3 HOH A 126 626 129 HOH HOH . E 3 HOH A 127 627 123 HOH HOH . E 3 HOH A 128 628 140 HOH HOH . E 3 HOH A 129 629 166 HOH HOH . E 3 HOH A 130 630 334 HOH HOH . E 3 HOH A 131 631 86 HOH HOH . E 3 HOH A 132 632 282 HOH HOH . E 3 HOH A 133 633 288 HOH HOH . E 3 HOH A 134 634 6 HOH HOH . E 3 HOH A 135 635 9 HOH HOH . E 3 HOH A 136 636 12 HOH HOH . E 3 HOH A 137 637 13 HOH HOH . E 3 HOH A 138 638 14 HOH HOH . E 3 HOH A 139 639 15 HOH HOH . E 3 HOH A 140 640 17 HOH HOH . E 3 HOH A 141 641 18 HOH HOH . E 3 HOH A 142 642 21 HOH HOH . E 3 HOH A 143 643 22 HOH HOH . E 3 HOH A 144 644 25 HOH HOH . E 3 HOH A 145 645 29 HOH HOH . E 3 HOH A 146 646 32 HOH HOH . E 3 HOH A 147 647 34 HOH HOH . E 3 HOH A 148 648 40 HOH HOH . E 3 HOH A 149 649 41 HOH HOH . E 3 HOH A 150 650 43 HOH HOH . E 3 HOH A 151 651 45 HOH HOH . E 3 HOH A 152 652 46 HOH HOH . E 3 HOH A 153 653 49 HOH HOH . E 3 HOH A 154 654 50 HOH HOH . E 3 HOH A 155 655 51 HOH HOH . E 3 HOH A 156 656 52 HOH HOH . E 3 HOH A 157 657 53 HOH HOH . E 3 HOH A 158 658 54 HOH HOH . E 3 HOH A 159 659 58 HOH HOH . E 3 HOH A 160 660 60 HOH HOH . E 3 HOH A 161 661 63 HOH HOH . E 3 HOH A 162 662 64 HOH HOH . E 3 HOH A 163 663 66 HOH HOH . E 3 HOH A 164 664 73 HOH HOH . E 3 HOH A 165 665 74 HOH HOH . E 3 HOH A 166 666 76 HOH HOH . E 3 HOH A 167 667 78 HOH HOH . E 3 HOH A 168 668 79 HOH HOH . E 3 HOH A 169 669 80 HOH HOH . E 3 HOH A 170 670 83 HOH HOH . E 3 HOH A 171 671 84 HOH HOH . E 3 HOH A 172 672 85 HOH HOH . E 3 HOH A 173 673 90 HOH HOH . E 3 HOH A 174 674 91 HOH HOH . E 3 HOH A 175 675 95 HOH HOH . E 3 HOH A 176 676 98 HOH HOH . E 3 HOH A 177 677 99 HOH HOH . E 3 HOH A 178 678 100 HOH HOH . E 3 HOH A 179 679 101 HOH HOH . E 3 HOH A 180 680 102 HOH HOH . E 3 HOH A 181 681 103 HOH HOH . E 3 HOH A 182 682 105 HOH HOH . E 3 HOH A 183 683 106 HOH HOH . E 3 HOH A 184 684 107 HOH HOH . E 3 HOH A 185 685 108 HOH HOH . E 3 HOH A 186 686 109 HOH HOH . E 3 HOH A 187 687 111 HOH HOH . E 3 HOH A 188 688 112 HOH HOH . E 3 HOH A 189 689 116 HOH HOH . E 3 HOH A 190 690 127 HOH HOH . E 3 HOH A 191 691 133 HOH HOH . E 3 HOH A 192 692 138 HOH HOH . E 3 HOH A 193 693 141 HOH HOH . E 3 HOH A 194 694 142 HOH HOH . E 3 HOH A 195 695 143 HOH HOH . E 3 HOH A 196 696 144 HOH HOH . E 3 HOH A 197 697 147 HOH HOH . E 3 HOH A 198 698 148 HOH HOH . E 3 HOH A 199 699 149 HOH HOH . E 3 HOH A 200 700 151 HOH HOH . E 3 HOH A 201 701 153 HOH HOH . E 3 HOH A 202 702 157 HOH HOH . E 3 HOH A 203 703 158 HOH HOH . E 3 HOH A 204 704 163 HOH HOH . E 3 HOH A 205 705 170 HOH HOH . E 3 HOH A 206 706 175 HOH HOH . E 3 HOH A 207 707 176 HOH HOH . E 3 HOH A 208 708 177 HOH HOH . E 3 HOH A 209 709 178 HOH HOH . E 3 HOH A 210 710 180 HOH HOH . E 3 HOH A 211 711 184 HOH HOH . E 3 HOH A 212 712 185 HOH HOH . E 3 HOH A 213 713 186 HOH HOH . E 3 HOH A 214 714 187 HOH HOH . E 3 HOH A 215 715 188 HOH HOH . E 3 HOH A 216 716 189 HOH HOH . E 3 HOH A 217 717 190 HOH HOH . E 3 HOH A 218 718 192 HOH HOH . E 3 HOH A 219 719 193 HOH HOH . E 3 HOH A 220 720 195 HOH HOH . E 3 HOH A 221 721 199 HOH HOH . E 3 HOH A 222 722 200 HOH HOH . E 3 HOH A 223 723 206 HOH HOH . E 3 HOH A 224 724 210 HOH HOH . E 3 HOH A 225 725 212 HOH HOH . E 3 HOH A 226 726 218 HOH HOH . E 3 HOH A 227 727 223 HOH HOH . E 3 HOH A 228 728 234 HOH HOH . E 3 HOH A 229 729 237 HOH HOH . E 3 HOH A 230 730 242 HOH HOH . E 3 HOH A 231 731 245 HOH HOH . E 3 HOH A 232 732 254 HOH HOH . E 3 HOH A 233 733 259 HOH HOH . E 3 HOH A 234 734 272 HOH HOH . E 3 HOH A 235 735 273 HOH HOH . E 3 HOH A 236 736 275 HOH HOH . E 3 HOH A 237 737 276 HOH HOH . E 3 HOH A 238 738 281 HOH HOH . E 3 HOH A 239 739 284 HOH HOH . E 3 HOH A 240 740 285 HOH HOH . E 3 HOH A 241 741 290 HOH HOH . E 3 HOH A 242 742 298 HOH HOH . E 3 HOH A 243 743 299 HOH HOH . E 3 HOH A 244 744 300 HOH HOH . E 3 HOH A 245 745 312 HOH HOH . E 3 HOH A 246 746 314 HOH HOH . E 3 HOH A 247 747 325 HOH HOH . E 3 HOH A 248 748 330 HOH HOH . E 3 HOH A 249 749 331 HOH HOH . E 3 HOH A 250 750 332 HOH HOH . E 3 HOH A 251 751 333 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.215 _atom_site.Cartn_y 3.623 _atom_site.Cartn_z 4.178 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #