data_4OYF # _model_server_result.job_id Wmie-_ivovcMwSZOa8ybmg _model_server_result.datetime_utc '2024-11-16 10:59:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 4OYF # _exptl.entry_id 4OYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OYF _cell.length_a 110.579 _cell.length_b 110.579 _cell.length_c 306.923 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OYF _symmetry.cell_setting . _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 306 A GLY 306 1_555 G NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc2 A O ASN 310 A ASN 310 1_555 G NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc3 A OD2 ASP 405 A ASP 405 1_555 G NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc4 B O GLY 306 B GLY 306 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc5 B O ASN 310 B ASN 310 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc6 B OD2 ASP 405 B ASP 405 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc7 C O GLY 306 C GLY 306 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc8 C O ASN 310 C ASN 310 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc9 C OD2 ASP 405 C ASP 405 1_555 I NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc10 D O GLY 306 D GLY 306 1_555 J NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc11 D O ASN 310 D ASN 310 1_555 J NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc12 D OD2 ASP 405 D ASP 405 1_555 J NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc13 E O GLY 306 E GLY 306 1_555 K NA NA . E NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc14 E O ASN 310 E ASN 310 1_555 K NA NA . E NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc15 E OD2 ASP 405 E ASP 405 1_555 K NA NA . E NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc16 F O GLY 306 F GLY 306 1_555 L NA NA . F NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc17 F O ASN 310 F ASN 310 1_555 L NA NA . F NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc18 F OD2 ASP 405 F ASP 405 1_555 L NA NA . F NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OYF _atom_sites.fract_transf_matrix[1][1] 0.009043 _atom_sites.fract_transf_matrix[1][2] 0.005221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NA A 1 501 422 NA NA . H 2 NA B 1 501 422 NA NA . I 2 NA C 1 501 422 NA NA . J 2 NA D 1 501 422 NA NA . K 2 NA E 1 501 422 NA NA . L 2 NA F 1 501 422 NA NA . M 3 HOH A 1 601 501 HOH HOH . N 3 HOH B 1 601 501 HOH HOH . O 3 HOH C 1 601 501 HOH HOH . P 3 HOH D 1 601 501 HOH HOH . Q 3 HOH E 1 601 501 HOH HOH . R 3 HOH F 1 601 501 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x 54.3 _atom_site.Cartn_y 269.098 _atom_site.Cartn_z -39.835 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 226.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #