data_4OYR
#
_model_server_result.job_id            Xo0RGE2ul0T9LGHVuG-4Kg 
_model_server_result.datetime_utc      '2024-11-08 06:14:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oyr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    4OYR 
#
_exptl.entry_id    4OYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OYR 
_cell.length_a            74.842 
_cell.length_b            90.653 
_cell.length_c            164.436 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OYR 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 280 n n 
PA O2A NAD sing 281 n n 
PA O5B NAD sing 282 n n 
PA O3 NAD sing 283 n n 
O2A HOA2 NAD sing 284 n n 
O5B C5B NAD sing 285 n n 
C5B C4B NAD sing 286 n n 
C5B H51A NAD sing 287 n n 
C5B H52A NAD sing 288 n n 
C4B O4B NAD sing 289 n n 
C4B C3B NAD sing 290 n n 
C4B H4B NAD sing 291 n n 
O4B C1B NAD sing 292 n n 
C3B O3B NAD sing 293 n n 
C3B C2B NAD sing 294 n n 
C3B H3B NAD sing 295 n n 
O3B HO3A NAD sing 296 n n 
C2B O2B NAD sing 297 n n 
C2B C1B NAD sing 298 n n 
C2B H2B NAD sing 299 n n 
O2B HO2A NAD sing 300 n n 
C1B N9A NAD sing 301 n n 
C1B H1B NAD sing 302 n n 
N9A C8A NAD sing 303 n y 
N9A C4A NAD sing 304 n y 
C8A N7A NAD doub 305 n y 
C8A H8A NAD sing 306 n n 
N7A C5A NAD sing 307 n y 
C5A C6A NAD sing 308 n y 
C5A C4A NAD doub 309 n y 
C6A N6A NAD sing 310 n n 
C6A N1A NAD doub 311 n y 
N6A H61A NAD sing 312 n n 
N6A H62A NAD sing 313 n n 
N1A C2A NAD sing 314 n y 
C2A N3A NAD doub 315 n y 
C2A H2A NAD sing 316 n n 
N3A C4A NAD sing 317 n y 
O3 PN NAD sing 318 n n 
PN O1N NAD doub 319 n n 
PN O2N NAD sing 320 n n 
PN O5D NAD sing 321 n n 
O5D C5D NAD sing 322 n n 
C5D C4D NAD sing 323 n n 
C5D H51N NAD sing 324 n n 
C5D H52N NAD sing 325 n n 
C4D O4D NAD sing 326 n n 
C4D C3D NAD sing 327 n n 
C4D H4D NAD sing 328 n n 
O4D C1D NAD sing 329 n n 
C3D O3D NAD sing 330 n n 
C3D C2D NAD sing 331 n n 
C3D H3D NAD sing 332 n n 
O3D HO3N NAD sing 333 n n 
C2D O2D NAD sing 334 n n 
C2D C1D NAD sing 335 n n 
C2D H2D NAD sing 336 n n 
O2D HO2N NAD sing 337 n n 
C1D N1N NAD sing 338 n n 
C1D H1D NAD sing 339 n n 
N1N C2N NAD sing 340 n y 
N1N C6N NAD doub 341 n y 
C2N C3N NAD doub 342 n y 
C2N H2N NAD sing 343 n n 
C3N C7N NAD sing 344 n n 
C3N C4N NAD sing 345 n y 
C7N O7N NAD doub 346 n n 
C7N N7N NAD sing 347 n n 
N7N H71N NAD sing 348 n n 
N7N H72N NAD sing 349 n n 
C4N C5N NAD doub 350 n y 
C4N H4N NAD sing 351 n n 
C5N C6N NAD sing 352 n y 
C5N H5N NAD sing 353 n n 
C6N H6N NAD sing 354 n n 
#
_atom_sites.entry_id                     4OYR 
_atom_sites.fract_transf_matrix[1][1]    0.013361 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011031 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 301 5461 NAD NAD . 
F 3 1US A 1 302 1 1US LIG . 
G 2 NAD B 1 301 5462 NAD NAD . 
H 3 1US B 1 302 1 1US LIG . 
I 2 NAD C 1 301 5463 NAD NAD . 
J 3 1US C 1 302 1 1US LIG . 
K 2 NAD D 1 301 5464 NAD NAD . 
L 3 1US D 1 302 1 1US LIG . 
M 4 HOH A 1 401 70 HOH HOH . 
M 4 HOH A 2 402 49 HOH HOH . 
M 4 HOH A 3 403 59 HOH HOH . 
M 4 HOH A 4 404 96 HOH HOH . 
M 4 HOH A 5 405 1 HOH HOH . 
M 4 HOH A 6 406 3 HOH HOH . 
M 4 HOH A 7 407 4 HOH HOH . 
M 4 HOH A 8 408 5 HOH HOH . 
M 4 HOH A 9 409 8 HOH HOH . 
M 4 HOH A 10 410 10 HOH HOH . 
M 4 HOH A 11 411 11 HOH HOH . 
M 4 HOH A 12 412 12 HOH HOH . 
M 4 HOH A 13 413 14 HOH HOH . 
M 4 HOH A 14 414 15 HOH HOH . 
M 4 HOH A 15 415 18 HOH HOH . 
M 4 HOH A 16 416 22 HOH HOH . 
M 4 HOH A 17 417 24 HOH HOH . 
M 4 HOH A 18 418 31 HOH HOH . 
M 4 HOH A 19 419 37 HOH HOH . 
M 4 HOH A 20 420 38 HOH HOH . 
M 4 HOH A 21 421 42 HOH HOH . 
M 4 HOH A 22 422 48 HOH HOH . 
M 4 HOH A 23 423 55 HOH HOH . 
M 4 HOH A 24 424 58 HOH HOH . 
M 4 HOH A 25 425 60 HOH HOH . 
M 4 HOH A 26 426 61 HOH HOH . 
M 4 HOH A 27 427 62 HOH HOH . 
M 4 HOH A 28 428 64 HOH HOH . 
M 4 HOH A 29 429 65 HOH HOH . 
M 4 HOH A 30 430 66 HOH HOH . 
M 4 HOH A 31 431 72 HOH HOH . 
M 4 HOH A 32 432 73 HOH HOH . 
M 4 HOH A 33 433 79 HOH HOH . 
M 4 HOH A 34 434 80 HOH HOH . 
M 4 HOH A 35 435 90 HOH HOH . 
M 4 HOH A 36 436 95 HOH HOH . 
M 4 HOH A 37 437 111 HOH HOH . 
M 4 HOH A 38 438 124 HOH HOH . 
M 4 HOH A 39 439 130 HOH HOH . 
M 4 HOH A 40 440 147 HOH HOH . 
M 4 HOH A 41 441 166 HOH HOH . 
M 4 HOH A 42 442 171 HOH HOH . 
M 4 HOH A 43 443 174 HOH HOH . 
M 4 HOH A 44 444 176 HOH HOH . 
N 4 HOH B 1 401 54 HOH HOH . 
N 4 HOH B 2 402 7 HOH HOH . 
N 4 HOH B 3 403 9 HOH HOH . 
N 4 HOH B 4 404 17 HOH HOH . 
N 4 HOH B 5 405 20 HOH HOH . 
N 4 HOH B 6 406 23 HOH HOH . 
N 4 HOH B 7 407 26 HOH HOH . 
N 4 HOH B 8 408 28 HOH HOH . 
N 4 HOH B 9 409 35 HOH HOH . 
N 4 HOH B 10 410 36 HOH HOH . 
N 4 HOH B 11 411 40 HOH HOH . 
N 4 HOH B 12 412 41 HOH HOH . 
N 4 HOH B 13 413 44 HOH HOH . 
N 4 HOH B 14 414 50 HOH HOH . 
N 4 HOH B 15 415 51 HOH HOH . 
N 4 HOH B 16 416 56 HOH HOH . 
N 4 HOH B 17 417 57 HOH HOH . 
N 4 HOH B 18 418 69 HOH HOH . 
N 4 HOH B 19 419 75 HOH HOH . 
N 4 HOH B 20 420 77 HOH HOH . 
N 4 HOH B 21 421 82 HOH HOH . 
N 4 HOH B 22 422 87 HOH HOH . 
N 4 HOH B 23 423 92 HOH HOH . 
N 4 HOH B 24 424 105 HOH HOH . 
N 4 HOH B 25 425 145 HOH HOH . 
N 4 HOH B 26 426 175 HOH HOH . 
N 4 HOH B 27 427 185 HOH HOH . 
N 4 HOH B 28 428 188 HOH HOH . 
N 4 HOH B 29 429 189 HOH HOH . 
N 4 HOH B 30 430 193 HOH HOH . 
N 4 HOH B 31 431 194 HOH HOH . 
O 4 HOH C 1 401 2 HOH HOH . 
O 4 HOH C 2 402 6 HOH HOH . 
O 4 HOH C 3 403 21 HOH HOH . 
O 4 HOH C 4 404 27 HOH HOH . 
O 4 HOH C 5 405 29 HOH HOH . 
O 4 HOH C 6 406 39 HOH HOH . 
O 4 HOH C 7 407 43 HOH HOH . 
O 4 HOH C 8 408 46 HOH HOH . 
O 4 HOH C 9 409 47 HOH HOH . 
O 4 HOH C 10 410 52 HOH HOH . 
O 4 HOH C 11 411 63 HOH HOH . 
O 4 HOH C 12 412 67 HOH HOH . 
O 4 HOH C 13 413 74 HOH HOH . 
O 4 HOH C 14 414 78 HOH HOH . 
O 4 HOH C 15 415 86 HOH HOH . 
O 4 HOH C 16 416 91 HOH HOH . 
O 4 HOH C 17 417 97 HOH HOH . 
O 4 HOH C 18 418 103 HOH HOH . 
O 4 HOH C 19 419 106 HOH HOH . 
O 4 HOH C 20 420 108 HOH HOH . 
O 4 HOH C 21 421 114 HOH HOH . 
O 4 HOH C 22 422 116 HOH HOH . 
O 4 HOH C 23 423 133 HOH HOH . 
O 4 HOH C 24 424 148 HOH HOH . 
O 4 HOH C 25 425 151 HOH HOH . 
O 4 HOH C 26 426 153 HOH HOH . 
O 4 HOH C 27 427 154 HOH HOH . 
O 4 HOH C 28 428 163 HOH HOH . 
P 4 HOH D 1 401 13 HOH HOH . 
P 4 HOH D 2 402 16 HOH HOH . 
P 4 HOH D 3 403 19 HOH HOH . 
P 4 HOH D 4 404 34 HOH HOH . 
P 4 HOH D 5 405 81 HOH HOH . 
P 4 HOH D 6 406 84 HOH HOH . 
P 4 HOH D 7 407 110 HOH HOH . 
P 4 HOH D 8 408 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . E 2 -5.969 -22.892 31.024 1 29.63 ? PA NAD 301 A 1 
HETATM 2 O O1A NAD . . . E 2 -6.958 -23.502 32.195 1 50.19 ? O1A NAD 301 A 1 
HETATM 3 O O2A NAD . . . E 2 -4.626 -23.45 31.152 1 32.79 ? O2A NAD 301 A 1 
HETATM 4 O O5B NAD . . . E 2 -6.625 -23.181 29.539 1 33.66 ? O5B NAD 301 A 1 
HETATM 5 C C5B NAD . . . E 2 -5.804 -23.087 28.399 1 20.62 ? C5B NAD 301 A 1 
HETATM 6 C C4B NAD . . . E 2 -6.327 -24.109 27.385 1 32.56 ? C4B NAD 301 A 1 
HETATM 7 O O4B NAD . . . E 2 -5.721 -24.081 26.037 1 32.74 ? O4B NAD 301 A 1 
HETATM 8 C C3B NAD . . . E 2 -6.083 -25.61 27.898 1 38.72 ? C3B NAD 301 A 1 
HETATM 9 O O3B NAD . . . E 2 -7.219 -26.342 28.265 1 39.17 ? O3B NAD 301 A 1 
HETATM 10 C C2B NAD . . . E 2 -5.264 -26.179 26.76 1 34.13 ? C2B NAD 301 A 1 
HETATM 11 O O2B NAD . . . E 2 -5.278 -27.576 26.675 1 37.84 ? O2B NAD 301 A 1 
HETATM 12 C C1B NAD . . . E 2 -5.843 -25.397 25.626 1 34.13 ? C1B NAD 301 A 1 
HETATM 13 N N9A NAD . . . E 2 -4.952 -25.567 24.465 1 29.78 ? N9A NAD 301 A 1 
HETATM 14 C C8A NAD . . . E 2 -3.599 -25.262 24.392 1 21.92 ? C8A NAD 301 A 1 
HETATM 15 N N7A NAD . . . E 2 -3.114 -25.703 23.12 1 20.01 ? N7A NAD 301 A 1 
HETATM 16 C C5A NAD . . . E 2 -4.214 -26.284 22.437 1 26.38 ? C5A NAD 301 A 1 
HETATM 17 C C6A NAD . . . E 2 -4.335 -26.881 21.155 1 25.59 ? C6A NAD 301 A 1 
HETATM 18 N N6A NAD . . . E 2 -3.169 -26.995 20.281 1 27.95 ? N6A NAD 301 A 1 
HETATM 19 N N1A NAD . . . E 2 -5.522 -27.332 20.763 1 30.87 ? N1A NAD 301 A 1 
HETATM 20 C C2A NAD . . . E 2 -6.653 -27.266 21.603 1 30.76 ? C2A NAD 301 A 1 
HETATM 21 N N3A NAD . . . E 2 -6.541 -26.686 22.879 1 34.45 ? N3A NAD 301 A 1 
HETATM 22 C C4A NAD . . . E 2 -5.342 -26.208 23.26 1 26.19 ? C4A NAD 301 A 1 
HETATM 23 O O3 NAD . . . E 2 -5.827 -21.239 31.156 1 35.12 ? O3 NAD 301 A 1 
HETATM 24 P PN NAD . . . E 2 -7.127 -20.25 30.95 1 29.4 ? PN NAD 301 A 1 
HETATM 25 O O1N NAD . . . E 2 -6.804 -18.869 31.794 1 32.31 ? O1N NAD 301 A 1 
HETATM 26 O O2N NAD . . . E 2 -8.375 -20.859 31.398 1 31.41 ? O2N NAD 301 A 1 
HETATM 27 O O5D NAD . . . E 2 -7.183 -19.915 29.314 1 41.85 ? O5D NAD 301 A 1 
HETATM 28 C C5D NAD . . . E 2 -8.317 -20.135 28.488 1 33.7 ? C5D NAD 301 A 1 
HETATM 29 C C4D NAD . . . E 2 -8.614 -18.871 27.657 1 32.05 ? C4D NAD 301 A 1 
HETATM 30 O O4D NAD . . . E 2 -8.884 -17.681 28.454 1 32.2 ? O4D NAD 301 A 1 
HETATM 31 C C3D NAD . . . E 2 -7.453 -18.358 26.71 1 31.98 ? C3D NAD 301 A 1 
HETATM 32 O O3D NAD . . . E 2 -7.865 -17.881 25.451 1 34.57 ? O3D NAD 301 A 1 
HETATM 33 C C2D NAD . . . E 2 -6.751 -17.295 27.598 1 35.67 ? C2D NAD 301 A 1 
HETATM 34 O O2D NAD . . . E 2 -5.739 -16.511 27.017 1 44.14 ? O2D NAD 301 A 1 
HETATM 35 C C1D NAD . . . E 2 -8 -16.638 28.095 1 31.82 ? C1D NAD 301 A 1 
HETATM 36 N N1N NAD . . . E 2 -7.837 -15.663 29.208 1 38.61 ? N1N NAD 301 A 1 
HETATM 37 C C2N NAD . . . E 2 -7.181 -16.015 30.46 1 41.06 ? C2N NAD 301 A 1 
HETATM 38 C C3N NAD . . . E 2 -7.111 -15.04 31.542 1 39.64 ? C3N NAD 301 A 1 
HETATM 39 C C7N NAD . . . E 2 -6.44 -15.389 32.89 1 36.74 ? C7N NAD 301 A 1 
HETATM 40 O O7N NAD . . . E 2 -6.085 -14.524 33.621 1 28.14 ? O7N NAD 301 A 1 
HETATM 41 N N7N NAD . . . E 2 -6.249 -16.804 33.24 1 25.21 ? N7N NAD 301 A 1 
HETATM 42 C C4N NAD . . . E 2 -7.712 -13.69 31.367 1 40.14 ? C4N NAD 301 A 1 
HETATM 43 C C5N NAD . . . E 2 -8.364 -13.341 30.125 1 41.19 ? C5N NAD 301 A 1 
HETATM 44 C C6N NAD . . . E 2 -8.444 -14.316 29.044 1 39.16 ? C6N NAD 301 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           44 
#