data_4OYR
#
_model_server_result.job_id            8L7xfVZ4qHY5dOJv7DVZAA 
_model_server_result.datetime_utc      '2024-11-08 06:21:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oyr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    4OYR 
#
_exptl.entry_id    4OYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OYR 
_cell.length_a            74.842 
_cell.length_b            90.653 
_cell.length_c            164.436 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OYR 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 280 n n 
PA O2A NAD sing 281 n n 
PA O5B NAD sing 282 n n 
PA O3 NAD sing 283 n n 
O2A HOA2 NAD sing 284 n n 
O5B C5B NAD sing 285 n n 
C5B C4B NAD sing 286 n n 
C5B H51A NAD sing 287 n n 
C5B H52A NAD sing 288 n n 
C4B O4B NAD sing 289 n n 
C4B C3B NAD sing 290 n n 
C4B H4B NAD sing 291 n n 
O4B C1B NAD sing 292 n n 
C3B O3B NAD sing 293 n n 
C3B C2B NAD sing 294 n n 
C3B H3B NAD sing 295 n n 
O3B HO3A NAD sing 296 n n 
C2B O2B NAD sing 297 n n 
C2B C1B NAD sing 298 n n 
C2B H2B NAD sing 299 n n 
O2B HO2A NAD sing 300 n n 
C1B N9A NAD sing 301 n n 
C1B H1B NAD sing 302 n n 
N9A C8A NAD sing 303 n y 
N9A C4A NAD sing 304 n y 
C8A N7A NAD doub 305 n y 
C8A H8A NAD sing 306 n n 
N7A C5A NAD sing 307 n y 
C5A C6A NAD sing 308 n y 
C5A C4A NAD doub 309 n y 
C6A N6A NAD sing 310 n n 
C6A N1A NAD doub 311 n y 
N6A H61A NAD sing 312 n n 
N6A H62A NAD sing 313 n n 
N1A C2A NAD sing 314 n y 
C2A N3A NAD doub 315 n y 
C2A H2A NAD sing 316 n n 
N3A C4A NAD sing 317 n y 
O3 PN NAD sing 318 n n 
PN O1N NAD doub 319 n n 
PN O2N NAD sing 320 n n 
PN O5D NAD sing 321 n n 
O5D C5D NAD sing 322 n n 
C5D C4D NAD sing 323 n n 
C5D H51N NAD sing 324 n n 
C5D H52N NAD sing 325 n n 
C4D O4D NAD sing 326 n n 
C4D C3D NAD sing 327 n n 
C4D H4D NAD sing 328 n n 
O4D C1D NAD sing 329 n n 
C3D O3D NAD sing 330 n n 
C3D C2D NAD sing 331 n n 
C3D H3D NAD sing 332 n n 
O3D HO3N NAD sing 333 n n 
C2D O2D NAD sing 334 n n 
C2D C1D NAD sing 335 n n 
C2D H2D NAD sing 336 n n 
O2D HO2N NAD sing 337 n n 
C1D N1N NAD sing 338 n n 
C1D H1D NAD sing 339 n n 
N1N C2N NAD sing 340 n y 
N1N C6N NAD doub 341 n y 
C2N C3N NAD doub 342 n y 
C2N H2N NAD sing 343 n n 
C3N C7N NAD sing 344 n n 
C3N C4N NAD sing 345 n y 
C7N O7N NAD doub 346 n n 
C7N N7N NAD sing 347 n n 
N7N H71N NAD sing 348 n n 
N7N H72N NAD sing 349 n n 
C4N C5N NAD doub 350 n y 
C4N H4N NAD sing 351 n n 
C5N C6N NAD sing 352 n y 
C5N H5N NAD sing 353 n n 
C6N H6N NAD sing 354 n n 
#
_atom_sites.entry_id                     4OYR 
_atom_sites.fract_transf_matrix[1][1]    0.013361 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011031 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 301 5461 NAD NAD . 
F 3 1US A 1 302 1 1US LIG . 
G 2 NAD B 1 301 5462 NAD NAD . 
H 3 1US B 1 302 1 1US LIG . 
I 2 NAD C 1 301 5463 NAD NAD . 
J 3 1US C 1 302 1 1US LIG . 
K 2 NAD D 1 301 5464 NAD NAD . 
L 3 1US D 1 302 1 1US LIG . 
M 4 HOH A 1 401 70 HOH HOH . 
M 4 HOH A 2 402 49 HOH HOH . 
M 4 HOH A 3 403 59 HOH HOH . 
M 4 HOH A 4 404 96 HOH HOH . 
M 4 HOH A 5 405 1 HOH HOH . 
M 4 HOH A 6 406 3 HOH HOH . 
M 4 HOH A 7 407 4 HOH HOH . 
M 4 HOH A 8 408 5 HOH HOH . 
M 4 HOH A 9 409 8 HOH HOH . 
M 4 HOH A 10 410 10 HOH HOH . 
M 4 HOH A 11 411 11 HOH HOH . 
M 4 HOH A 12 412 12 HOH HOH . 
M 4 HOH A 13 413 14 HOH HOH . 
M 4 HOH A 14 414 15 HOH HOH . 
M 4 HOH A 15 415 18 HOH HOH . 
M 4 HOH A 16 416 22 HOH HOH . 
M 4 HOH A 17 417 24 HOH HOH . 
M 4 HOH A 18 418 31 HOH HOH . 
M 4 HOH A 19 419 37 HOH HOH . 
M 4 HOH A 20 420 38 HOH HOH . 
M 4 HOH A 21 421 42 HOH HOH . 
M 4 HOH A 22 422 48 HOH HOH . 
M 4 HOH A 23 423 55 HOH HOH . 
M 4 HOH A 24 424 58 HOH HOH . 
M 4 HOH A 25 425 60 HOH HOH . 
M 4 HOH A 26 426 61 HOH HOH . 
M 4 HOH A 27 427 62 HOH HOH . 
M 4 HOH A 28 428 64 HOH HOH . 
M 4 HOH A 29 429 65 HOH HOH . 
M 4 HOH A 30 430 66 HOH HOH . 
M 4 HOH A 31 431 72 HOH HOH . 
M 4 HOH A 32 432 73 HOH HOH . 
M 4 HOH A 33 433 79 HOH HOH . 
M 4 HOH A 34 434 80 HOH HOH . 
M 4 HOH A 35 435 90 HOH HOH . 
M 4 HOH A 36 436 95 HOH HOH . 
M 4 HOH A 37 437 111 HOH HOH . 
M 4 HOH A 38 438 124 HOH HOH . 
M 4 HOH A 39 439 130 HOH HOH . 
M 4 HOH A 40 440 147 HOH HOH . 
M 4 HOH A 41 441 166 HOH HOH . 
M 4 HOH A 42 442 171 HOH HOH . 
M 4 HOH A 43 443 174 HOH HOH . 
M 4 HOH A 44 444 176 HOH HOH . 
N 4 HOH B 1 401 54 HOH HOH . 
N 4 HOH B 2 402 7 HOH HOH . 
N 4 HOH B 3 403 9 HOH HOH . 
N 4 HOH B 4 404 17 HOH HOH . 
N 4 HOH B 5 405 20 HOH HOH . 
N 4 HOH B 6 406 23 HOH HOH . 
N 4 HOH B 7 407 26 HOH HOH . 
N 4 HOH B 8 408 28 HOH HOH . 
N 4 HOH B 9 409 35 HOH HOH . 
N 4 HOH B 10 410 36 HOH HOH . 
N 4 HOH B 11 411 40 HOH HOH . 
N 4 HOH B 12 412 41 HOH HOH . 
N 4 HOH B 13 413 44 HOH HOH . 
N 4 HOH B 14 414 50 HOH HOH . 
N 4 HOH B 15 415 51 HOH HOH . 
N 4 HOH B 16 416 56 HOH HOH . 
N 4 HOH B 17 417 57 HOH HOH . 
N 4 HOH B 18 418 69 HOH HOH . 
N 4 HOH B 19 419 75 HOH HOH . 
N 4 HOH B 20 420 77 HOH HOH . 
N 4 HOH B 21 421 82 HOH HOH . 
N 4 HOH B 22 422 87 HOH HOH . 
N 4 HOH B 23 423 92 HOH HOH . 
N 4 HOH B 24 424 105 HOH HOH . 
N 4 HOH B 25 425 145 HOH HOH . 
N 4 HOH B 26 426 175 HOH HOH . 
N 4 HOH B 27 427 185 HOH HOH . 
N 4 HOH B 28 428 188 HOH HOH . 
N 4 HOH B 29 429 189 HOH HOH . 
N 4 HOH B 30 430 193 HOH HOH . 
N 4 HOH B 31 431 194 HOH HOH . 
O 4 HOH C 1 401 2 HOH HOH . 
O 4 HOH C 2 402 6 HOH HOH . 
O 4 HOH C 3 403 21 HOH HOH . 
O 4 HOH C 4 404 27 HOH HOH . 
O 4 HOH C 5 405 29 HOH HOH . 
O 4 HOH C 6 406 39 HOH HOH . 
O 4 HOH C 7 407 43 HOH HOH . 
O 4 HOH C 8 408 46 HOH HOH . 
O 4 HOH C 9 409 47 HOH HOH . 
O 4 HOH C 10 410 52 HOH HOH . 
O 4 HOH C 11 411 63 HOH HOH . 
O 4 HOH C 12 412 67 HOH HOH . 
O 4 HOH C 13 413 74 HOH HOH . 
O 4 HOH C 14 414 78 HOH HOH . 
O 4 HOH C 15 415 86 HOH HOH . 
O 4 HOH C 16 416 91 HOH HOH . 
O 4 HOH C 17 417 97 HOH HOH . 
O 4 HOH C 18 418 103 HOH HOH . 
O 4 HOH C 19 419 106 HOH HOH . 
O 4 HOH C 20 420 108 HOH HOH . 
O 4 HOH C 21 421 114 HOH HOH . 
O 4 HOH C 22 422 116 HOH HOH . 
O 4 HOH C 23 423 133 HOH HOH . 
O 4 HOH C 24 424 148 HOH HOH . 
O 4 HOH C 25 425 151 HOH HOH . 
O 4 HOH C 26 426 153 HOH HOH . 
O 4 HOH C 27 427 154 HOH HOH . 
O 4 HOH C 28 428 163 HOH HOH . 
P 4 HOH D 1 401 13 HOH HOH . 
P 4 HOH D 2 402 16 HOH HOH . 
P 4 HOH D 3 403 19 HOH HOH . 
P 4 HOH D 4 404 34 HOH HOH . 
P 4 HOH D 5 405 81 HOH HOH . 
P 4 HOH D 6 406 84 HOH HOH . 
P 4 HOH D 7 407 110 HOH HOH . 
P 4 HOH D 8 408 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . K 2 -38.056 8.801 22.874 1 67.43 ? PA NAD 301 D 1 
HETATM 2 O O1A NAD . . . K 2 -39.11 7.799 23.664 1 59.28 ? O1A NAD 301 D 1 
HETATM 3 O O2A NAD . . . K 2 -38.786 9.827 22.128 1 70.32 ? O2A NAD 301 D 1 
HETATM 4 O O5B NAD . . . K 2 -36.959 9.467 23.947 1 70.07 ? O5B NAD 301 D 1 
HETATM 5 C C5B NAD . . . K 2 -37.235 10.659 24.648 1 64.54 ? C5B NAD 301 D 1 
HETATM 6 C C4B NAD . . . K 2 -37.503 10.511 26.16 1 66.59 ? C4B NAD 301 D 1 
HETATM 7 O O4B NAD . . . K 2 -36.789 11.524 26.989 1 69.56 ? O4B NAD 301 D 1 
HETATM 8 C C3B NAD . . . K 2 -39.046 10.736 26.534 1 75.28 ? C3B NAD 301 D 1 
HETATM 9 O O3B NAD . . . K 2 -39.743 9.668 27.123 1 72.12 ? O3B NAD 301 D 1 
HETATM 10 C C2B NAD . . . K 2 -38.996 12.08 27.254 1 73.18 ? C2B NAD 301 D 1 
HETATM 11 O O2B NAD . . . K 2 -40.132 12.449 27.988 1 69.07 ? O2B NAD 301 D 1 
HETATM 12 C C1B NAD . . . K 2 -37.693 11.955 27.967 1 70.44 ? C1B NAD 301 D 1 
HETATM 13 N N9A NAD . . . K 2 -37.26 13.29 28.433 1 63.49 ? N9A NAD 301 D 1 
HETATM 14 C C8A NAD . . . K 2 -36.975 14.376 27.614 1 58.8 ? C8A NAD 301 D 1 
HETATM 15 N N7A NAD . . . K 2 -36.626 15.482 28.458 1 63.21 ? N7A NAD 301 D 1 
HETATM 16 C C5A NAD . . . K 2 -36.701 15.042 29.806 1 68.31 ? C5A NAD 301 D 1 
HETATM 17 C C6A NAD . . . K 2 -36.464 15.72 31.04 1 64.48 ? C6A NAD 301 D 1 
HETATM 18 N N6A NAD . . . K 2 -36.062 17.125 31.011 1 54.36 ? N6A NAD 301 D 1 
HETATM 19 N N1A NAD . . . K 2 -36.609 15.063 32.202 1 67.24 ? N1A NAD 301 D 1 
HETATM 20 C C2A NAD . . . K 2 -36.998 13.693 32.202 1 64.43 ? C2A NAD 301 D 1 
HETATM 21 N N3A NAD . . . K 2 -37.233 13.022 30.98 1 60.85 ? N3A NAD 301 D 1 
HETATM 22 C C4A NAD . . . K 2 -37.087 13.692 29.808 1 65.47 ? C4A NAD 301 D 1 
HETATM 23 O O3 NAD . . . K 2 -37.126 7.925 21.82 1 79.08 ? O3 NAD 301 D 1 
HETATM 24 P PN NAD . . . K 2 -35.976 6.924 22.465 1 67.9 ? PN NAD 301 D 1 
HETATM 25 O O1N NAD . . . K 2 -35.037 6.4 21.223 1 103 ? O1N NAD 301 D 1 
HETATM 26 O O2N NAD . . . K 2 -36.64 5.797 23.105 1 80.17 ? O2N NAD 301 D 1 
HETATM 27 O O5D NAD . . . K 2 -35.049 7.722 23.602 1 76.96 ? O5D NAD 301 D 1 
HETATM 28 C C5D NAD . . . K 2 -34.492 7.011 24.702 1 71.53 ? C5D NAD 301 D 1 
HETATM 29 C C4D NAD . . . K 2 -32.949 6.972 24.734 1 66.92 ? C4D NAD 301 D 1 
HETATM 30 O O4D NAD . . . K 2 -32.279 6.088 23.79 1 67.66 ? O4D NAD 301 D 1 
HETATM 31 C C3D NAD . . . K 2 -32.196 8.347 24.542 1 64.13 ? C3D NAD 301 D 1 
HETATM 32 O O3D NAD . . . K 2 -31.204 8.677 25.484 1 61.29 ? O3D NAD 301 D 1 
HETATM 33 C C2D NAD . . . K 2 -31.738 8.243 23.064 1 57.52 ? C2D NAD 301 D 1 
HETATM 34 O O2D NAD . . . K 2 -30.877 9.23 22.564 1 64.96 ? O2D NAD 301 D 1 
HETATM 35 C C1D NAD . . . K 2 -31.282 6.808 23.094 1 65.41 ? C1D NAD 301 D 1 
HETATM 36 N N1N NAD . . . K 2 -31.057 6.239 21.738 1 57.58 ? N1N NAD 301 D 1 
HETATM 37 C C2N NAD . . . K 2 -32.151 6.177 20.793 1 57.92 ? C2N NAD 301 D 1 
HETATM 38 C C3N NAD . . . K 2 -31.933 5.605 19.484 1 66.83 ? C3N NAD 301 D 1 
HETATM 39 C C7N NAD . . . K 2 -33.092 5.546 18.468 1 62.93 ? C7N NAD 301 D 1 
HETATM 40 O O7N NAD . . . K 2 -32.888 5.147 17.378 1 62.57 ? O7N NAD 301 D 1 
HETATM 41 N N7N NAD . . . K 2 -34.413 6.042 18.839 1 62.76 ? N7N NAD 301 D 1 
HETATM 42 C C4N NAD . . . K 2 -30.579 5.085 19.107 1 67.77 ? C4N NAD 301 D 1 
HETATM 43 C C5N NAD . . . K 2 -29.487 5.147 20.051 1 57.99 ? C5N NAD 301 D 1 
HETATM 44 C C6N NAD . . . K 2 -29.717 5.726 21.366 1 55.91 ? C6N NAD 301 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           44 
#