data_4OYS # _model_server_result.job_id ObthJtBECzgUG0L4Lm98lQ _model_server_result.datetime_utc '2024-11-12 20:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":905}' # _entry.id 4OYS # _exptl.entry_id 4OYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.866 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8S)-9-[(5-chloranylpyridin-3-yl)methyl]-2-[(3R)-3-methylmorpholin-4-yl]-8-(trifluoromethyl)-6,7,8,9a-tetrahydro-3H-pyrimido[1,2-a]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OYS _cell.length_a 89.81 _cell.length_b 145.7 _cell.length_c 61.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OYS _symmetry.cell_setting . _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 Cl F3 N5 O2' _chem_comp.formula_weight 445.866 _chem_comp.id 1TT _chem_comp.mon_nstd_flag . _chem_comp.name (8S)-9-[(5-chloranylpyridin-3-yl)methyl]-2-[(3R)-3-methylmorpholin-4-yl]-8-(trifluoromethyl)-6,7,8,9a-tetrahydro-3H-pyrimido[1,2-a]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F16 C13 1TT sing 1 n n F15 C13 1TT sing 2 n n F14 C13 1TT sing 3 n n C13 C8 1TT sing 4 n n C8 C9 1TT sing 5 n n C8 N7 1TT sing 6 n n C30 C21 1TT sing 7 n n C10 C9 1TT sing 8 n n C10 N5 1TT sing 9 n n C22 N7 1TT sing 10 n n C22 C23 1TT sing 11 n n N7 C6 1TT sing 12 n n N5 C6 1TT sing 13 n n N5 C1 1TT sing 14 n n O12 C1 1TT doub 15 n n C6 N4 1TT sing 16 n n C1 C2 1TT sing 17 n n N4 C3 1TT doub 18 n n C2 C3 1TT sing 19 n n C3 N11 1TT sing 20 n n C21 N11 1TT sing 21 n n C21 C20 1TT sing 22 n n N11 C17 1TT sing 23 n n C17 C18 1TT sing 24 n n C23 C24 1TT doub 25 n y C23 C28 1TT sing 26 n y C24 C25 1TT sing 27 n y O19 C20 1TT sing 28 n n O19 C18 1TT sing 29 n n C28 N27 1TT doub 30 n y C25 CL1 1TT sing 31 n n C25 C26 1TT doub 32 n y N27 C26 1TT sing 33 n y C2 H1 1TT sing 34 n n C2 H2 1TT sing 35 n n C8 H3 1TT sing 36 n n C9 H4 1TT sing 37 n n C9 H5 1TT sing 38 n n C10 H6 1TT sing 39 n n C10 H7 1TT sing 40 n n C20 H8 1TT sing 41 n n C20 H9 1TT sing 42 n n C21 H10 1TT sing 43 n n C22 H11 1TT sing 44 n n C22 H12 1TT sing 45 n n C24 H13 1TT sing 46 n n C30 H14 1TT sing 47 n n C30 H15 1TT sing 48 n n C30 H16 1TT sing 49 n n C6 H17 1TT sing 50 n n C17 H19 1TT sing 51 n n C17 H20 1TT sing 52 n n C18 H21 1TT sing 53 n n C18 H22 1TT sing 54 n n C26 H23 1TT sing 55 n n C28 H24 1TT sing 56 n n # _atom_sites.entry_id 4OYS _atom_sites.fract_transf_matrix[1][1] 0.011135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 1 SO4 SO4 . C 2 SO4 A 1 902 2 SO4 SO4 . D 2 SO4 A 1 903 3 SO4 SO4 . E 2 SO4 A 1 904 4 SO4 SO4 . F 3 1TT A 1 905 1 1TT INH . G 4 HOH A 1 1001 11 HOH HOH . G 4 HOH A 2 1002 12 HOH HOH . G 4 HOH A 3 1003 1 HOH HOH . G 4 HOH A 4 1004 2 HOH HOH . G 4 HOH A 5 1005 4 HOH HOH . G 4 HOH A 6 1006 5 HOH HOH . G 4 HOH A 7 1007 6 HOH HOH . G 4 HOH A 8 1008 7 HOH HOH . G 4 HOH A 9 1009 8 HOH HOH . G 4 HOH A 10 1010 9 HOH HOH . G 4 HOH A 11 1011 10 HOH HOH . G 4 HOH A 12 1012 13 HOH HOH . G 4 HOH A 13 1013 14 HOH HOH . G 4 HOH A 14 1014 15 HOH HOH . G 4 HOH A 15 1015 16 HOH HOH . G 4 HOH A 16 1016 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1TT . . . F 3 17.365 -17.532 -23.292 1 41.04 ? C1 1TT 905 A 1 HETATM 2 C C2 1TT . . . F 3 16.783 -16.238 -22.949 1 37.22 ? C2 1TT 905 A 1 HETATM 3 C C3 1TT . . . F 3 17.587 -15.073 -22.826 1 36.03 ? C3 1TT 905 A 1 HETATM 4 C C8 1TT . . . F 3 21.52 -17.483 -24.333 1 45.7 ? C8 1TT 905 A 1 HETATM 5 C C9 1TT . . . F 3 20.961 -18.749 -23.665 1 43.81 ? C9 1TT 905 A 1 HETATM 6 C C10 1TT . . . F 3 19.443 -18.837 -23.837 1 39.75 ? C10 1TT 905 A 1 HETATM 7 C C13 1TT . . . F 3 21.323 -17.436 -25.836 1 46.98 ? C13 1TT 905 A 1 HETATM 8 C C20 1TT . . . F 3 15.291 -12.347 -21.809 1 37.49 ? C20 1TT 905 A 1 HETATM 9 C C21 1TT . . . F 3 15.664 -13.439 -22.791 1 36.58 ? C21 1TT 905 A 1 HETATM 10 C C22 1TT . . . F 3 21.637 -14.943 -23.703 1 46.98 ? C22 1TT 905 A 1 HETATM 11 C C24 1TT . . . F 3 21.642 -13.055 -22.002 1 57.06 ? C24 1TT 905 A 1 HETATM 12 C C30 1TT . . . F 3 15.324 -13.09 -24.231 1 35.25 ? C30 1TT 905 A 1 HETATM 13 N N4 1TT . . . F 3 18.957 -15.145 -23.116 1 38.64 ? N4 1TT 905 A 1 HETATM 14 N N5 1TT . . . F 3 18.807 -17.546 -23.515 1 40.55 ? N5 1TT 905 A 1 HETATM 15 C C6 1TT . . . F 3 19.536 -16.328 -23.394 1 42.49 ? C6 1TT 905 A 1 HETATM 16 N N7 1TT . . . F 3 20.955 -16.298 -23.661 1 45.79 ? N7 1TT 905 A 1 HETATM 17 N N11 1TT . . . F 3 17.127 -13.851 -22.643 1 36.91 ? N11 1TT 905 A 1 HETATM 18 O O12 1TT . . . F 3 16.796 -18.625 -23.408 1 43.75 ? O12 1TT 905 A 1 HETATM 19 F F14 1TT . . . F 3 20.103 -17.02 -26.18 1 47.35 ? F14 1TT 905 A 1 HETATM 20 F F15 1TT . . . F 3 22.186 -16.598 -26.401 1 49.3 ? F15 1TT 905 A 1 HETATM 21 F F16 1TT . . . F 3 21.5 -18.622 -26.42 1 45.47 ? F16 1TT 905 A 1 HETATM 22 C C17 1TT . . . F 3 18.085 -12.751 -22.452 1 38.27 ? C17 1TT 905 A 1 HETATM 23 C C18 1TT . . . F 3 17.55 -11.75 -21.453 1 39.79 ? C18 1TT 905 A 1 HETATM 24 O O19 1TT . . . F 3 16.253 -11.273 -21.817 1 39.5 ? O19 1TT 905 A 1 HETATM 25 C C23 1TT . . . F 3 21.882 -14.403 -22.325 1 52.31 ? C23 1TT 905 A 1 HETATM 26 C C25 1TT . . . F 3 21.879 -12.622 -20.668 1 60.6 ? C25 1TT 905 A 1 HETATM 27 C C26 1TT . . . F 3 22.343 -13.543 -19.686 1 57.87 ? C26 1TT 905 A 1 HETATM 28 N N27 1TT . . . F 3 22.568 -14.856 -19.993 1 54.71 ? N27 1TT 905 A 1 HETATM 29 C C28 1TT . . . F 3 22.334 -15.263 -21.278 1 53.42 ? C28 1TT 905 A 1 HETATM 30 CL CL1 1TT . . . F 3 21.567 -10.986 -20.218 1 64.38 ? CL1 1TT 905 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #