data_4OZO # _model_server_result.job_id n6vx6relpy_B0KiGADZCsg _model_server_result.datetime_utc '2024-11-05 04:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ozo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4OZO # _exptl.entry_id 4OZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.315 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-nitrophenyl 1-thio-beta-D-galactopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OZO _cell.length_a 125.3 _cell.length_b 122.17 _cell.length_c 159.65 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OZO _symmetry.cell_setting . _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C12 H15 N O7 S' _chem_comp.formula_weight 317.315 _chem_comp.id OTN _chem_comp.mon_nstd_flag . _chem_comp.name '2-nitrophenyl 1-thio-beta-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-(2-nitrophenyl)sulfanyl-oxane-3,4,5-triol;2-nitrophenyl 1-thio-beta-D-galactoside;2-nitrophenyl 1-thio-D-galactoside;2-nitrophenyl 1-thio-galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' N1' OTN sing 250 n n C3' C4' OTN doub 251 n y C3' C2' OTN sing 252 n y N1' C2' OTN sing 253 n n N1' O3' OTN doub 254 n n C4' C5' OTN sing 255 n y C2' C1' OTN doub 256 n y C5' C6' OTN doub 257 n y C1' C6' OTN sing 258 n y C1' S01 OTN sing 259 n n S01 C1 OTN sing 260 n n O2 C2 OTN sing 261 n n C1 C2 OTN sing 262 n n C1 O5 OTN sing 263 n n C2 C3 OTN sing 264 n n O5 C5 OTN sing 265 n n C3 O3 OTN sing 266 n n C3 C4 OTN sing 267 n n C5 C4 OTN sing 268 n n C5 C6 OTN sing 269 n n O6 C6 OTN sing 270 n n C4 O4 OTN sing 271 n n C3' H1A OTN sing 272 n n C4' H2A OTN sing 273 n n C5' H3A OTN sing 274 n n C6' H4A OTN sing 275 n n C1 H1 OTN sing 276 n n C5 H5 OTN sing 277 n n C6 H61 OTN sing 278 n n C6 H62 OTN sing 279 n n O6 HO6 OTN sing 280 n n C4 H4 OTN sing 281 n n O4 HO4 OTN sing 282 n n C3 H3 OTN sing 283 n n O3 HO3 OTN sing 284 n n C2 H2 OTN sing 285 n n O2 HO2 OTN sing 286 n n # _atom_sites.entry_id 4OZO _atom_sites.fract_transf_matrix[1][1] 0.007981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 501 GOL GOL . D 2 GOL A 1 502 502 GOL GOL . E 3 OTN A 1 503 500 OTN OTN . F 2 GOL B 1 501 501 GOL GOL . G 2 GOL B 1 502 502 GOL GOL . H 3 OTN B 1 503 500 OTN OTN . I 4 HOH A 1 601 168 HOH HOH . I 4 HOH A 2 602 79 HOH HOH . I 4 HOH A 3 603 88 HOH HOH . I 4 HOH A 4 604 204 HOH HOH . I 4 HOH A 5 605 8 HOH HOH . I 4 HOH A 6 606 63 HOH HOH . I 4 HOH A 7 607 113 HOH HOH . I 4 HOH A 8 608 198 HOH HOH . I 4 HOH A 9 609 147 HOH HOH . I 4 HOH A 10 610 2 HOH HOH . I 4 HOH A 11 611 5 HOH HOH . I 4 HOH A 12 612 6 HOH HOH . I 4 HOH A 13 613 7 HOH HOH . I 4 HOH A 14 614 10 HOH HOH . I 4 HOH A 15 615 11 HOH HOH . I 4 HOH A 16 616 13 HOH HOH . I 4 HOH A 17 617 16 HOH HOH . I 4 HOH A 18 618 17 HOH HOH . I 4 HOH A 19 619 29 HOH HOH . I 4 HOH A 20 620 32 HOH HOH . I 4 HOH A 21 621 33 HOH HOH . I 4 HOH A 22 622 38 HOH HOH . I 4 HOH A 23 623 42 HOH HOH . I 4 HOH A 24 624 43 HOH HOH . I 4 HOH A 25 625 45 HOH HOH . I 4 HOH A 26 626 49 HOH HOH . I 4 HOH A 27 627 50 HOH HOH . I 4 HOH A 28 628 53 HOH HOH . I 4 HOH A 29 629 54 HOH HOH . I 4 HOH A 30 630 58 HOH HOH . I 4 HOH A 31 631 60 HOH HOH . I 4 HOH A 32 632 62 HOH HOH . I 4 HOH A 33 633 64 HOH HOH . I 4 HOH A 34 634 68 HOH HOH . I 4 HOH A 35 635 70 HOH HOH . I 4 HOH A 36 636 71 HOH HOH . I 4 HOH A 37 637 72 HOH HOH . I 4 HOH A 38 638 74 HOH HOH . I 4 HOH A 39 639 76 HOH HOH . I 4 HOH A 40 640 77 HOH HOH . I 4 HOH A 41 641 78 HOH HOH . I 4 HOH A 42 642 82 HOH HOH . I 4 HOH A 43 643 83 HOH HOH . I 4 HOH A 44 644 85 HOH HOH . I 4 HOH A 45 645 86 HOH HOH . I 4 HOH A 46 646 87 HOH HOH . I 4 HOH A 47 647 91 HOH HOH . I 4 HOH A 48 648 92 HOH HOH . I 4 HOH A 49 649 95 HOH HOH . I 4 HOH A 50 650 96 HOH HOH . I 4 HOH A 51 651 98 HOH HOH . I 4 HOH A 52 652 100 HOH HOH . I 4 HOH A 53 653 105 HOH HOH . I 4 HOH A 54 654 106 HOH HOH . I 4 HOH A 55 655 107 HOH HOH . I 4 HOH A 56 656 108 HOH HOH . I 4 HOH A 57 657 109 HOH HOH . I 4 HOH A 58 658 110 HOH HOH . I 4 HOH A 59 659 112 HOH HOH . I 4 HOH A 60 660 117 HOH HOH . I 4 HOH A 61 661 118 HOH HOH . I 4 HOH A 62 662 119 HOH HOH . I 4 HOH A 63 663 120 HOH HOH . I 4 HOH A 64 664 122 HOH HOH . I 4 HOH A 65 665 126 HOH HOH . I 4 HOH A 66 666 128 HOH HOH . I 4 HOH A 67 667 129 HOH HOH . I 4 HOH A 68 668 131 HOH HOH . I 4 HOH A 69 669 132 HOH HOH . I 4 HOH A 70 670 133 HOH HOH . I 4 HOH A 71 671 134 HOH HOH . I 4 HOH A 72 672 135 HOH HOH . I 4 HOH A 73 673 138 HOH HOH . I 4 HOH A 74 674 139 HOH HOH . I 4 HOH A 75 675 143 HOH HOH . I 4 HOH A 76 676 144 HOH HOH . I 4 HOH A 77 677 146 HOH HOH . I 4 HOH A 78 678 149 HOH HOH . I 4 HOH A 79 679 150 HOH HOH . I 4 HOH A 80 680 151 HOH HOH . I 4 HOH A 81 681 155 HOH HOH . I 4 HOH A 82 682 156 HOH HOH . I 4 HOH A 83 683 163 HOH HOH . I 4 HOH A 84 684 170 HOH HOH . I 4 HOH A 85 685 171 HOH HOH . I 4 HOH A 86 686 173 HOH HOH . I 4 HOH A 87 687 176 HOH HOH . I 4 HOH A 88 688 182 HOH HOH . I 4 HOH A 89 689 185 HOH HOH . I 4 HOH A 90 690 186 HOH HOH . I 4 HOH A 91 691 187 HOH HOH . I 4 HOH A 92 692 189 HOH HOH . I 4 HOH A 93 693 190 HOH HOH . I 4 HOH A 94 694 192 HOH HOH . I 4 HOH A 95 695 194 HOH HOH . I 4 HOH A 96 696 202 HOH HOH . I 4 HOH A 97 697 203 HOH HOH . I 4 HOH A 98 698 205 HOH HOH . I 4 HOH A 99 699 206 HOH HOH . I 4 HOH A 100 700 211 HOH HOH . I 4 HOH A 101 701 213 HOH HOH . I 4 HOH A 102 702 214 HOH HOH . I 4 HOH A 103 703 215 HOH HOH . I 4 HOH A 104 704 217 HOH HOH . I 4 HOH A 105 705 218 HOH HOH . I 4 HOH A 106 706 220 HOH HOH . J 4 HOH B 1 601 30 HOH HOH . J 4 HOH B 2 602 55 HOH HOH . J 4 HOH B 3 603 51 HOH HOH . J 4 HOH B 4 604 115 HOH HOH . J 4 HOH B 5 605 31 HOH HOH . J 4 HOH B 6 606 197 HOH HOH . J 4 HOH B 7 607 52 HOH HOH . J 4 HOH B 8 608 114 HOH HOH . J 4 HOH B 9 609 111 HOH HOH . J 4 HOH B 10 610 172 HOH HOH . J 4 HOH B 11 611 67 HOH HOH . J 4 HOH B 12 612 145 HOH HOH . J 4 HOH B 13 613 116 HOH HOH . J 4 HOH B 14 614 209 HOH HOH . J 4 HOH B 15 615 103 HOH HOH . J 4 HOH B 16 616 164 HOH HOH . J 4 HOH B 17 617 193 HOH HOH . J 4 HOH B 18 618 216 HOH HOH . J 4 HOH B 19 619 9 HOH HOH . J 4 HOH B 20 620 12 HOH HOH . J 4 HOH B 21 621 14 HOH HOH . J 4 HOH B 22 622 15 HOH HOH . J 4 HOH B 23 623 18 HOH HOH . J 4 HOH B 24 624 19 HOH HOH . J 4 HOH B 25 625 21 HOH HOH . J 4 HOH B 26 626 25 HOH HOH . J 4 HOH B 27 627 26 HOH HOH . J 4 HOH B 28 628 27 HOH HOH . J 4 HOH B 29 629 28 HOH HOH . J 4 HOH B 30 630 34 HOH HOH . J 4 HOH B 31 631 35 HOH HOH . J 4 HOH B 32 632 36 HOH HOH . J 4 HOH B 33 633 37 HOH HOH . J 4 HOH B 34 634 39 HOH HOH . J 4 HOH B 35 635 40 HOH HOH . J 4 HOH B 36 636 41 HOH HOH . J 4 HOH B 37 637 44 HOH HOH . J 4 HOH B 38 638 47 HOH HOH . J 4 HOH B 39 639 48 HOH HOH . J 4 HOH B 40 640 56 HOH HOH . J 4 HOH B 41 641 57 HOH HOH . J 4 HOH B 42 642 65 HOH HOH . J 4 HOH B 43 643 66 HOH HOH . J 4 HOH B 44 644 69 HOH HOH . J 4 HOH B 45 645 75 HOH HOH . J 4 HOH B 46 646 80 HOH HOH . J 4 HOH B 47 647 84 HOH HOH . J 4 HOH B 48 648 89 HOH HOH . J 4 HOH B 49 649 90 HOH HOH . J 4 HOH B 50 650 93 HOH HOH . J 4 HOH B 51 651 94 HOH HOH . J 4 HOH B 52 652 97 HOH HOH . J 4 HOH B 53 653 99 HOH HOH . J 4 HOH B 54 654 102 HOH HOH . J 4 HOH B 55 655 104 HOH HOH . J 4 HOH B 56 656 121 HOH HOH . J 4 HOH B 57 657 123 HOH HOH . J 4 HOH B 58 658 124 HOH HOH . J 4 HOH B 59 659 125 HOH HOH . J 4 HOH B 60 660 127 HOH HOH . J 4 HOH B 61 661 130 HOH HOH . J 4 HOH B 62 662 136 HOH HOH . J 4 HOH B 63 663 137 HOH HOH . J 4 HOH B 64 664 141 HOH HOH . J 4 HOH B 65 665 142 HOH HOH . J 4 HOH B 66 666 148 HOH HOH . J 4 HOH B 67 667 152 HOH HOH . J 4 HOH B 68 668 153 HOH HOH . J 4 HOH B 69 669 154 HOH HOH . J 4 HOH B 70 670 160 HOH HOH . J 4 HOH B 71 671 161 HOH HOH . J 4 HOH B 72 672 162 HOH HOH . J 4 HOH B 73 673 165 HOH HOH . J 4 HOH B 74 674 167 HOH HOH . J 4 HOH B 75 675 169 HOH HOH . J 4 HOH B 76 676 175 HOH HOH . J 4 HOH B 77 677 177 HOH HOH . J 4 HOH B 78 678 178 HOH HOH . J 4 HOH B 79 679 179 HOH HOH . J 4 HOH B 80 680 180 HOH HOH . J 4 HOH B 81 681 181 HOH HOH . J 4 HOH B 82 682 183 HOH HOH . J 4 HOH B 83 683 184 HOH HOH . J 4 HOH B 84 684 188 HOH HOH . J 4 HOH B 85 685 191 HOH HOH . J 4 HOH B 86 686 195 HOH HOH . J 4 HOH B 87 687 196 HOH HOH . J 4 HOH B 88 688 199 HOH HOH . J 4 HOH B 89 689 200 HOH HOH . J 4 HOH B 90 690 201 HOH HOH . J 4 HOH B 91 691 207 HOH HOH . J 4 HOH B 92 692 208 HOH HOH . J 4 HOH B 93 693 210 HOH HOH . J 4 HOH B 94 694 212 HOH HOH . J 4 HOH B 95 695 219 HOH HOH . J 4 HOH B 96 696 221 HOH HOH . J 4 HOH B 97 697 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2' OTN . . . E 3 29.818 -32.047 1.168 1 54.05 ? O2' OTN 503 A 1 HETATM 2 N N1' OTN . . . E 3 29.027 -32.134 2.386 1 31.17 ? N1' OTN 503 A 1 HETATM 3 O O3' OTN . . . E 3 28.915 -33.324 3.024 1 34.26 ? O3' OTN 503 A 1 HETATM 4 C C2' OTN . . . E 3 28.46 -30.998 2.833 1 27.83 ? C2' OTN 503 A 1 HETATM 5 C C3' OTN . . . E 3 28.614 -29.845 2.068 1 29.01 ? C3' OTN 503 A 1 HETATM 6 C C4' OTN . . . E 3 28.056 -28.642 2.466 1 21.18 ? C4' OTN 503 A 1 HETATM 7 C C5' OTN . . . E 3 27.317 -28.589 3.635 1 25.19 ? C5' OTN 503 A 1 HETATM 8 C C6' OTN . . . E 3 27.145 -29.742 4.39 1 23.58 ? C6' OTN 503 A 1 HETATM 9 C C1' OTN . . . E 3 27.684 -30.962 3.997 1 22.16 ? C1' OTN 503 A 1 HETATM 10 S S01 OTN . . . E 3 27.42 -32.324 5.061 1 29.31 ? S01 OTN 503 A 1 HETATM 11 C C1 OTN . . . E 3 26.113 -31.721 6.122 1 26.96 ? C1 OTN 503 A 1 HETATM 12 O O5 OTN . . . E 3 26.564 -30.803 7.179 1 25.3 ? O5 OTN 503 A 1 HETATM 13 C C5 OTN . . . E 3 25.443 -30.396 7.977 1 18.61 ? C5 OTN 503 A 1 HETATM 14 C C6 OTN . . . E 3 25.95 -29.429 9.048 1 16.25 ? C6 OTN 503 A 1 HETATM 15 O O6 OTN . . . E 3 26.544 -28.293 8.417 1 17.33 ? O6 OTN 503 A 1 HETATM 16 C C4 OTN . . . E 3 24.782 -31.607 8.647 1 17.98 ? C4 OTN 503 A 1 HETATM 17 O O4 OTN . . . E 3 25.723 -32.294 9.478 1 22.2 ? O4 OTN 503 A 1 HETATM 18 C C3 OTN . . . E 3 24.334 -32.531 7.551 1 25.2 ? C3 OTN 503 A 1 HETATM 19 O O3 OTN . . . E 3 23.666 -33.716 8.074 1 29.91 ? O3 OTN 503 A 1 HETATM 20 C C2 OTN . . . E 3 25.561 -32.945 6.76 1 19.75 ? C2 OTN 503 A 1 HETATM 21 O O2 OTN . . . E 3 25.085 -33.805 5.745 1 25.78 ? O2 OTN 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #