data_4OZQ # _model_server_result.job_id bcA4SGwKK_KoNJjIM6JxRA _model_server_result.datetime_utc '2024-11-22 01:09:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ozq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 4OZQ # _exptl.entry_id 4OZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.43 _cell.angle_beta 87.45 _cell.angle_gamma 89.94 _cell.entry_id 4OZQ _cell.length_a 65.137 _cell.length_b 72.193 _cell.length_c 94.098 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4OZQ _atom_sites.fract_transf_matrix[1][1] 0.015352 _atom_sites.fract_transf_matrix[1][2] -0.000017 _atom_sites.fract_transf_matrix[1][3] -0.000706 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013852 _atom_sites.fract_transf_matrix[2][3] -0.003864 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 801 999 ADP ADP . D 3 EDO A 1 802 1 EDO EDO . E 2 ADP B 1 801 998 ADP ADP . F 3 EDO B 1 802 1 EDO EDO . G 4 HOH A 1 901 9 HOH HOH . G 4 HOH A 2 902 4 HOH HOH . G 4 HOH A 3 903 7 HOH HOH . G 4 HOH A 4 904 8 HOH HOH . G 4 HOH A 5 905 10 HOH HOH . G 4 HOH A 6 906 11 HOH HOH . G 4 HOH A 7 907 12 HOH HOH . G 4 HOH A 8 908 13 HOH HOH . G 4 HOH A 9 909 14 HOH HOH . G 4 HOH A 10 910 15 HOH HOH . G 4 HOH A 11 911 16 HOH HOH . G 4 HOH A 12 912 29 HOH HOH . G 4 HOH A 13 913 31 HOH HOH . G 4 HOH A 14 914 35 HOH HOH . G 4 HOH A 15 915 36 HOH HOH . H 4 HOH B 1 901 17 HOH HOH . H 4 HOH B 2 902 1 HOH HOH . H 4 HOH B 3 903 2 HOH HOH . H 4 HOH B 4 904 3 HOH HOH . H 4 HOH B 5 905 5 HOH HOH . H 4 HOH B 6 906 6 HOH HOH . H 4 HOH B 7 907 18 HOH HOH . H 4 HOH B 8 908 19 HOH HOH . H 4 HOH B 9 909 20 HOH HOH . H 4 HOH B 10 910 21 HOH HOH . H 4 HOH B 11 911 22 HOH HOH . H 4 HOH B 12 912 23 HOH HOH . H 4 HOH B 13 913 24 HOH HOH . H 4 HOH B 14 914 25 HOH HOH . H 4 HOH B 15 915 26 HOH HOH . H 4 HOH B 16 916 27 HOH HOH . H 4 HOH B 17 917 28 HOH HOH . H 4 HOH B 18 918 30 HOH HOH . H 4 HOH B 19 919 32 HOH HOH . H 4 HOH B 20 920 33 HOH HOH . H 4 HOH B 21 921 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 -3.381 -14.484 65.509 1 21.09 ? PB ADP 801 B 1 HETATM 2 O O1B ADP . . . E 2 -3.666 -15.082 64.096 1 17.33 ? O1B ADP 801 B 1 HETATM 3 O O2B ADP . . . E 2 -3.451 -12.945 65.509 1 20.73 ? O2B ADP 801 B 1 HETATM 4 O O3B ADP . . . E 2 -4.218 -15.075 66.687 1 20.67 ? O3B ADP 801 B 1 HETATM 5 P PA ADP . . . E 2 -0.94 -13.594 66.046 1 20.22 ? PA ADP 801 B 1 HETATM 6 O O1A ADP . . . E 2 -0.885 -13.241 64.555 1 18.37 ? O1A ADP 801 B 1 HETATM 7 O O2A ADP . . . E 2 -1.6 -12.71 67.09 1 18.76 ? O2A ADP 801 B 1 HETATM 8 O O3A ADP . . . E 2 -1.911 -14.87 66.098 1 17.76 ? O3A ADP 801 B 1 HETATM 9 O O5' ADP . . . E 2 0.618 -13.934 66.494 1 19.51 ? O5' ADP 801 B 1 HETATM 10 C C5' ADP . . . E 2 0.805 -14.812 67.615 1 19.34 ? C5' ADP 801 B 1 HETATM 11 C C4' ADP . . . E 2 2.236 -14.737 68.167 1 19.88 ? C4' ADP 801 B 1 HETATM 12 O O4' ADP . . . E 2 3.132 -15.673 67.508 1 20.26 ? O4' ADP 801 B 1 HETATM 13 C C3' ADP . . . E 2 2.857 -13.355 67.97 1 19.19 ? C3' ADP 801 B 1 HETATM 14 O O3' ADP . . . E 2 2.549 -12.434 69.029 1 18.11 ? O3' ADP 801 B 1 HETATM 15 C C2' ADP . . . E 2 4.351 -13.654 67.813 1 19.38 ? C2' ADP 801 B 1 HETATM 16 O O2' ADP . . . E 2 5.053 -13.685 69.065 1 19.6 ? O2' ADP 801 B 1 HETATM 17 C C1' ADP . . . E 2 4.4 -15.022 67.212 1 18.78 ? C1' ADP 801 B 1 HETATM 18 N N9 ADP . . . E 2 4.537 -14.904 65.766 1 17.22 ? N9 ADP 801 B 1 HETATM 19 C C8 ADP . . . E 2 3.537 -14.96 64.864 1 16.63 ? C8 ADP 801 B 1 HETATM 20 N N7 ADP . . . E 2 4.046 -14.879 63.599 1 15.16 ? N7 ADP 801 B 1 HETATM 21 C C5 ADP . . . E 2 5.361 -14.801 63.725 1 15.53 ? C5 ADP 801 B 1 HETATM 22 C C6 ADP . . . E 2 6.468 -14.713 62.781 1 17.44 ? C6 ADP 801 B 1 HETATM 23 N N6 ADP . . . E 2 6.147 -14.661 61.467 1 17.94 ? N6 ADP 801 B 1 HETATM 24 N N1 ADP . . . E 2 7.758 -14.704 63.26 1 18.09 ? N1 ADP 801 B 1 HETATM 25 C C2 ADP . . . E 2 7.953 -14.717 64.613 1 17.95 ? C2 ADP 801 B 1 HETATM 26 N N3 ADP . . . E 2 6.949 -14.788 65.539 1 16.72 ? N3 ADP 801 B 1 HETATM 27 C C4 ADP . . . E 2 5.682 -14.827 65.147 1 16.38 ? C4 ADP 801 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #