data_4P0P # _model_server_result.job_id WuZ_wixAbbwe1OJ3KzRR6Q _model_server_result.datetime_utc '2025-08-01 07:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 4P0P # _exptl.entry_id 4P0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P0P _cell.length_a 85.023 _cell.length_b 226.499 _cell.length_c 52.457 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 29 A ASP 274 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A OE1 GLU 32 A GLU 277 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A OD1 ASP 62 A ASP 307 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 F MG MG . A MG 601 1_555 G O HOH . A HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? hydrog WATSON-CRICK hydrog1 C N1 DA 3 E DA 3 1_555 E N3 DT 15 G DT 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N6 DA 3 E DA 3 1_555 E O4 DT 15 G DT 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog3 C O4 DT 4 E DT 4 1_555 E N6 DA 14 G DA 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DG 5 E DG 5 1_555 E N3 DC 13 G DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N2 DG 5 E DG 5 1_555 E O2 DC 13 G DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C O6 DG 5 E DG 5 1_555 E N4 DC 13 G DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DC MISPAIR' hydrog7 C O4 DT 6 E DT 6 1_555 E N4 DC 11 G DC 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 DG 7 E DG 7 1_555 E N3 DC 11 G DC 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N2 DG 7 E DG 7 1_555 E O2 DC 11 G DC 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O6 DG 7 E DG 7 1_555 E N4 DC 11 G DC 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 DT 8 E DT 8 1_555 E N1 DA 10 G DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O4 DT 8 E DT 8 1_555 E N6 DA 10 G DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DG 9 E DG 9 1_555 E N3 DC 9 G DC 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 DG 9 E DG 9 1_555 E O2 DC 9 G DC 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 DG 9 E DG 9 1_555 E N4 DC 9 G DC 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N3 DT 10 E DT 10 1_555 E N1 DA 8 G DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C O4 DT 10 E DT 10 1_555 E N6 DA 8 G DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog18 C O2 DC 11 E DC 11 1_555 E N1 DG 7 G DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N3 DT 12 E DT 12 1_555 E N1 DA 6 G DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C O4 DT 12 E DT 12 1_555 E N6 DA 6 G DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog21 C N3 DC 13 E DC 13 1_555 D N2 DG 6 F DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N1 DA 14 E DA 14 1_555 D N3 DT 5 F DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N6 DA 14 E DA 14 1_555 D O4 DT 5 F DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog24 C N1 DA 15 E DA 15 1_555 D N3 DT 4 F DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog25 C N1 DA 15 E DA 15 1_555 D N3 DT 5 F DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N3 DT 16 E DT 16 1_555 D N1 DA 3 F DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O4 DT 16 E DT 16 1_555 D N6 DA 3 F DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog28 C O2 DC 17 E DC 17 1_555 D N2 DG 2 F DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4P0P _atom_sites.fract_transf_matrix[1][1] 0.011762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 MG A 1 601 1 MG MG . G 7 HOH A 1 701 40 HOH HOH . G 7 HOH A 2 702 10 HOH HOH . G 7 HOH A 3 703 42 HOH HOH . G 7 HOH A 4 704 2 HOH HOH . G 7 HOH A 5 705 3 HOH HOH . G 7 HOH A 6 706 8 HOH HOH . G 7 HOH A 7 707 9 HOH HOH . G 7 HOH A 8 708 14 HOH HOH . G 7 HOH A 9 709 17 HOH HOH . G 7 HOH A 10 710 19 HOH HOH . G 7 HOH A 11 711 23 HOH HOH . G 7 HOH A 12 712 27 HOH HOH . G 7 HOH A 13 713 29 HOH HOH . G 7 HOH A 14 714 30 HOH HOH . G 7 HOH A 15 715 32 HOH HOH . G 7 HOH A 16 716 33 HOH HOH . G 7 HOH A 17 717 36 HOH HOH . G 7 HOH A 18 718 41 HOH HOH . G 7 HOH A 19 719 51 HOH HOH . G 7 HOH A 20 720 54 HOH HOH . G 7 HOH A 21 721 55 HOH HOH . H 7 HOH B 1 601 16 HOH HOH . H 7 HOH B 2 602 37 HOH HOH . H 7 HOH B 3 603 48 HOH HOH . H 7 HOH B 4 604 25 HOH HOH . H 7 HOH B 5 605 1 HOH HOH . H 7 HOH B 6 606 6 HOH HOH . H 7 HOH B 7 607 7 HOH HOH . H 7 HOH B 8 608 13 HOH HOH . H 7 HOH B 9 609 18 HOH HOH . H 7 HOH B 10 610 20 HOH HOH . H 7 HOH B 11 611 24 HOH HOH . H 7 HOH B 12 612 28 HOH HOH . H 7 HOH B 13 613 34 HOH HOH . H 7 HOH B 14 614 43 HOH HOH . H 7 HOH B 15 615 44 HOH HOH . H 7 HOH B 16 616 45 HOH HOH . H 7 HOH B 17 617 46 HOH HOH . H 7 HOH B 18 618 47 HOH HOH . I 7 HOH E 1 101 15 HOH HOH . I 7 HOH E 2 102 26 HOH HOH . I 7 HOH E 3 103 31 HOH HOH . I 7 HOH E 4 104 35 HOH HOH . J 7 HOH F 1 101 21 HOH HOH . K 7 HOH G 1 101 12 HOH HOH . K 7 HOH G 2 102 22 HOH HOH . K 7 HOH G 3 103 56 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 54.943 _atom_site.Cartn_y 37.823 _atom_site.Cartn_z 24.418 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 76.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 150 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #