data_4P0W # _model_server_result.job_id QDpQRpPAC_rZBX9jNHdOLA _model_server_result.datetime_utc '2024-11-23 23:12:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4P0W # _exptl.entry_id 4P0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(1S,2R,4aS,8aR)-1,2,4a-trimethyl-5-methylidenedecahydronaphthalen-1-yl]methyl}cyclohexa-2,5-diene-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P0W _cell.length_a 111.239 _cell.length_b 111.239 _cell.length_c 67.292 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 98 A ASP 103 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc2 A OD1 ASP 98 A ASP 103 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc3 A OD2 ASP 102 A ASP 107 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A OD2 ASP 102 A ASP 107 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 A OD2 ASP 238 A ASP 243 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 C O16 ZOL . A ZOL 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc7 C O12 ZOL . A ZOL 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 C O17 ZOL . A ZOL 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc9 C O11 ZOL . A ZOL 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc10 C O12 ZOL . A ZOL 501 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc11 D MG MG . A MG 502 1_555 G O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc12 D MG MG . A MG 502 1_555 G O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc13 E MG MG . A MG 503 1_555 G O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc14 E MG MG . A MG 503 1_555 G O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc15 E MG MG . A MG 503 1_555 G O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc16 F MG MG . A MG 504 1_555 G O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc17 F MG MG . A MG 504 1_555 G O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc18 F MG MG . A MG 504 1_555 G O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? # _chem_comp.formula 'C21 H28 O2' _chem_comp.formula_weight 312.446 _chem_comp.id 1XH _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[(1S,2R,4aS,8aR)-1,2,4a-trimethyl-5-methylidenedecahydronaphthalen-1-yl]methyl}cyclohexa-2,5-diene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Arenarone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAP 1XH doub 1 n n CAB CAT 1XH sing 2 n n CAC CAV 1XH sing 3 n n CAD CAW 1XH sing 4 n n OAE CAR 1XH doub 5 n n OAF CAS 1XH doub 6 n n CAG CAH 1XH doub 7 n n CAG CAR 1XH sing 8 n n CAH CAS 1XH sing 9 n n CAI CAQ 1XH doub 10 n n CAI CAR 1XH sing 11 n n CAJ CAK 1XH sing 12 n n CAJ CAL 1XH sing 13 n n CAK CAP 1XH sing 14 n n CAL CAU 1XH sing 15 n n CAM CAN 1XH sing 16 n n CAM CAT 1XH sing 17 n n CAN CAV 1XH sing 18 n n CAO CAQ 1XH sing 19 n n CAO CAW 1XH sing 20 n n CAP CAV 1XH sing 21 n n CAQ CAS 1XH sing 22 n n CAT CAW 1XH sing 23 n n CAU CAV 1XH sing 24 n n CAU CAW 1XH sing 25 n n CAA HAA 1XH sing 26 n n CAA HAAA 1XH sing 27 n n CAB HAB 1XH sing 28 n n CAB HABA 1XH sing 29 n n CAB HABB 1XH sing 30 n n CAC HAC 1XH sing 31 n n CAC HACA 1XH sing 32 n n CAC HACB 1XH sing 33 n n CAD HAD 1XH sing 34 n n CAD HADA 1XH sing 35 n n CAD HADB 1XH sing 36 n n CAG H12 1XH sing 37 n n CAH HAH 1XH sing 38 n n CAI HAI 1XH sing 39 n n CAJ HAJ 1XH sing 40 n n CAJ HAJA 1XH sing 41 n n CAK HAK 1XH sing 42 n n CAK HAKA 1XH sing 43 n n CAL HAL 1XH sing 44 n n CAL HALA 1XH sing 45 n n CAM HAM 1XH sing 46 n n CAM HAMA 1XH sing 47 n n CAN HAN 1XH sing 48 n n CAN HANA 1XH sing 49 n n CAO HAO 1XH sing 50 n n CAO H26 1XH sing 51 n n CAT HAT 1XH sing 52 n n CAU HAU 1XH sing 53 n n # _atom_sites.entry_id 4P0W _atom_sites.fract_transf_matrix[1][1] 0.00899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1XH A 1 500 500 1XH 1XH . C 3 ZOL A 1 501 501 ZOL ZOL . D 4 MG A 1 502 502 MG MG . E 4 MG A 1 503 503 MG MG . F 4 MG A 1 504 504 MG MG . G 5 HOH A 1 601 375 HOH HOH . G 5 HOH A 2 602 405 HOH HOH . G 5 HOH A 3 603 388 HOH HOH . G 5 HOH A 4 604 372 HOH HOH . G 5 HOH A 5 605 360 HOH HOH . G 5 HOH A 6 606 403 HOH HOH . G 5 HOH A 7 607 366 HOH HOH . G 5 HOH A 8 608 382 HOH HOH . G 5 HOH A 9 609 387 HOH HOH . G 5 HOH A 10 610 391 HOH HOH . G 5 HOH A 11 611 369 HOH HOH . G 5 HOH A 12 612 374 HOH HOH . G 5 HOH A 13 613 386 HOH HOH . G 5 HOH A 14 614 379 HOH HOH . G 5 HOH A 15 615 413 HOH HOH . G 5 HOH A 16 616 411 HOH HOH . G 5 HOH A 17 617 384 HOH HOH . G 5 HOH A 18 618 404 HOH HOH . G 5 HOH A 19 619 356 HOH HOH . G 5 HOH A 20 620 357 HOH HOH . G 5 HOH A 21 621 358 HOH HOH . G 5 HOH A 22 622 359 HOH HOH . G 5 HOH A 23 623 362 HOH HOH . G 5 HOH A 24 624 363 HOH HOH . G 5 HOH A 25 625 364 HOH HOH . G 5 HOH A 26 626 365 HOH HOH . G 5 HOH A 27 627 367 HOH HOH . G 5 HOH A 28 628 368 HOH HOH . G 5 HOH A 29 629 370 HOH HOH . G 5 HOH A 30 630 371 HOH HOH . G 5 HOH A 31 631 373 HOH HOH . G 5 HOH A 32 632 376 HOH HOH . G 5 HOH A 33 633 377 HOH HOH . G 5 HOH A 34 634 378 HOH HOH . G 5 HOH A 35 635 380 HOH HOH . G 5 HOH A 36 636 381 HOH HOH . G 5 HOH A 37 637 383 HOH HOH . G 5 HOH A 38 638 385 HOH HOH . G 5 HOH A 39 639 389 HOH HOH . G 5 HOH A 40 640 392 HOH HOH . G 5 HOH A 41 641 393 HOH HOH . G 5 HOH A 42 642 394 HOH HOH . G 5 HOH A 43 643 395 HOH HOH . G 5 HOH A 44 644 396 HOH HOH . G 5 HOH A 45 645 397 HOH HOH . G 5 HOH A 46 646 398 HOH HOH . G 5 HOH A 47 647 399 HOH HOH . G 5 HOH A 48 648 400 HOH HOH . G 5 HOH A 49 649 401 HOH HOH . G 5 HOH A 50 650 402 HOH HOH . G 5 HOH A 51 651 406 HOH HOH . G 5 HOH A 52 652 407 HOH HOH . G 5 HOH A 53 653 408 HOH HOH . G 5 HOH A 54 654 409 HOH HOH . G 5 HOH A 55 655 410 HOH HOH . G 5 HOH A 56 656 412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 1XH . . . B 2 34.85 10.329 6.434 1 38.9 ? CAA 1XH 500 A 1 HETATM 2 C CAB 1XH . . . B 2 36.396 8.157 1.043 1 34.18 ? CAB 1XH 500 A 1 HETATM 3 C CAC 1XH . . . B 2 34.543 10.536 3.85 1 56.54 ? CAC 1XH 500 A 1 HETATM 4 C CAD 1XH . . . B 2 35.276 6.205 2.437 1 44.77 ? CAD 1XH 500 A 1 HETATM 5 O OAE 1XH . . . B 2 30.123 5.234 -2.05 1 63.24 ? OAE 1XH 500 A 1 HETATM 6 O OAF 1XH . . . B 2 32.329 5.386 2.569 1 50.78 ? OAF 1XH 500 A 1 HETATM 7 C CAG 1XH . . . B 2 30.16 4.623 -0.042 1 39.61 ? CAG 1XH 500 A 1 HETATM 8 C CAH 1XH . . . B 2 30.768 4.688 1.193 1 46.35 ? CAH 1XH 500 A 1 HETATM 9 C CAI 1XH . . . B 2 31.895 6.194 -0.841 1 49.48 ? CAI 1XH 500 A 1 HETATM 10 C CAJ 1XH . . . B 2 32.083 7.696 5.55 1 46.69 ? CAJ 1XH 500 A 1 HETATM 11 C CAK 1XH . . . B 2 33.285 8.296 6.4 1 49.98 ? CAK 1XH 500 A 1 HETATM 12 C CAL 1XH . . . B 2 32.626 7.103 4.231 1 46.71 ? CAL 1XH 500 A 1 HETATM 13 C CAM 1XH . . . B 2 36.199 8.614 3.082 1 44.31 ? CAM 1XH 500 A 1 HETATM 14 C CAN 1XH . . . B 2 35.648 8.357 4.43 1 46.73 ? CAN 1XH 500 A 1 HETATM 15 C CAO 1XH . . . B 2 33.698 7.132 0.621 1 46.53 ? CAO 1XH 500 A 1 HETATM 16 C CAP 1XH . . . B 2 34.189 9.238 5.756 1 50.51 ? CAP 1XH 500 A 1 HETATM 17 C CAQ 1XH . . . B 2 32.564 6.257 0.433 1 52.12 ? CAQ 1XH 500 A 1 HETATM 18 C CAR 1XH . . . B 2 30.731 5.393 -1.008 1 43.25 ? CAR 1XH 500 A 1 HETATM 19 C CAS 1XH . . . B 2 31.907 5.47 1.442 1 51.36 ? CAS 1XH 500 A 1 HETATM 20 C CAT 1XH . . . B 2 35.354 8.404 1.932 1 27.46 ? CAT 1XH 500 A 1 HETATM 21 C CAU 1XH . . . B 2 33.567 8.085 3.393 1 51.7 ? CAU 1XH 500 A 1 HETATM 22 C CAV 1XH . . . B 2 34.481 9.064 4.406 1 49.55 ? CAV 1XH 500 A 1 HETATM 23 C CAW 1XH . . . B 2 34.464 7.458 2.095 1 37.94 ? CAW 1XH 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #