data_4P10
#
_model_server_result.job_id            RYzEAfBOSvR3LvUYmwiiow 
_model_server_result.datetime_utc      '2024-11-22 20:33:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4p10 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    4P10 
#
_exptl.entry_id    4P10 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.12 
_cell.angle_gamma         90 
_cell.entry_id            4P10 
_cell.length_a            49.576 
_cell.length_b            49.243 
_cell.length_c            95.048 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4P10 
_symmetry.cell_setting             . 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    Monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 156 A CYS 178 1_555 A SG CYS 169 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 A SG CYS 228 A CYS 250 1_555 A SG CYS 252 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
disulf ? disulf3 A SG CYS 243 A CYS 265 1_555 A SG CYS 257 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
covale ? covale1 A ND2 ASN 86 A ASN 108 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
metalc ? metalc1 A ND1 HIS 159 A HIS 181 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
metalc ? metalc2 A OE1 GLU 162 A GLU 184 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc3 A OE2 GLU 162 A GLU 184 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc4 A ND1 HIS 288 A HIS 310 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc5 B N6 2B8 . A 2B8 501 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 289 n n 
C1 O1 NAG sing 290 n n 
C1 O5 NAG sing 291 n n 
C1 H1 NAG sing 292 n n 
C2 C3 NAG sing 293 n n 
C2 N2 NAG sing 294 n n 
C2 H2 NAG sing 295 n n 
C3 C4 NAG sing 296 n n 
C3 O3 NAG sing 297 n n 
C3 H3 NAG sing 298 n n 
C4 C5 NAG sing 299 n n 
C4 O4 NAG sing 300 n n 
C4 H4 NAG sing 301 n n 
C5 C6 NAG sing 302 n n 
C5 O5 NAG sing 303 n n 
C5 H5 NAG sing 304 n n 
C6 O6 NAG sing 305 n n 
C6 H61 NAG sing 306 n n 
C6 H62 NAG sing 307 n n 
C7 C8 NAG sing 308 n n 
C7 N2 NAG sing 309 n n 
C7 O7 NAG doub 310 n n 
C8 H81 NAG sing 311 n n 
C8 H82 NAG sing 312 n n 
C8 H83 NAG sing 313 n n 
N2 HN2 NAG sing 314 n n 
O1 HO1 NAG sing 315 n n 
O3 HO3 NAG sing 316 n n 
O4 HO4 NAG sing 317 n n 
O6 HO6 NAG sing 318 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4P10 
_atom_sites.fract_transf_matrix[1][1]    0.020171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001101 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020307 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 2B8 A 1 501 1 2B8 INH . 
C 3 ZN A 1 502 1 ZN ZN . 
D 4 DMS A 1 503 1 DMS DMS . 
E 5 NAG A 1 504 632 NAG NAG . 
F 6 HOH A 1 601 59 HOH HOH . 
F 6 HOH A 2 602 212 HOH HOH . 
F 6 HOH A 3 603 106 HOH HOH . 
F 6 HOH A 4 604 210 HOH HOH . 
F 6 HOH A 5 605 168 HOH HOH . 
F 6 HOH A 6 606 23 HOH HOH . 
F 6 HOH A 7 607 216 HOH HOH . 
F 6 HOH A 8 608 25 HOH HOH . 
F 6 HOH A 9 609 79 HOH HOH . 
F 6 HOH A 10 610 43 HOH HOH . 
F 6 HOH A 11 611 52 HOH HOH . 
F 6 HOH A 12 612 36 HOH HOH . 
F 6 HOH A 13 613 139 HOH HOH . 
F 6 HOH A 14 614 15 HOH HOH . 
F 6 HOH A 15 615 84 HOH HOH . 
F 6 HOH A 16 616 38 HOH HOH . 
F 6 HOH A 17 617 69 HOH HOH . 
F 6 HOH A 18 618 63 HOH HOH . 
F 6 HOH A 19 619 68 HOH HOH . 
F 6 HOH A 20 620 180 HOH HOH . 
F 6 HOH A 21 621 111 HOH HOH . 
F 6 HOH A 22 622 208 HOH HOH . 
F 6 HOH A 23 623 5 HOH HOH . 
F 6 HOH A 24 624 203 HOH HOH . 
F 6 HOH A 25 625 2 HOH HOH . 
F 6 HOH A 26 626 3 HOH HOH . 
F 6 HOH A 27 627 4 HOH HOH . 
F 6 HOH A 28 628 6 HOH HOH . 
F 6 HOH A 29 629 7 HOH HOH . 
F 6 HOH A 30 630 8 HOH HOH . 
F 6 HOH A 31 631 9 HOH HOH . 
F 6 HOH A 32 632 10 HOH HOH . 
F 6 HOH A 33 633 11 HOH HOH . 
F 6 HOH A 34 634 12 HOH HOH . 
F 6 HOH A 35 635 13 HOH HOH . 
F 6 HOH A 36 636 14 HOH HOH . 
F 6 HOH A 37 637 16 HOH HOH . 
F 6 HOH A 38 638 17 HOH HOH . 
F 6 HOH A 39 639 18 HOH HOH . 
F 6 HOH A 40 640 19 HOH HOH . 
F 6 HOH A 41 641 20 HOH HOH . 
F 6 HOH A 42 642 21 HOH HOH . 
F 6 HOH A 43 643 22 HOH HOH . 
F 6 HOH A 44 644 24 HOH HOH . 
F 6 HOH A 45 645 26 HOH HOH . 
F 6 HOH A 46 646 27 HOH HOH . 
F 6 HOH A 47 647 28 HOH HOH . 
F 6 HOH A 48 648 29 HOH HOH . 
F 6 HOH A 49 649 31 HOH HOH . 
F 6 HOH A 50 650 32 HOH HOH . 
F 6 HOH A 51 651 33 HOH HOH . 
F 6 HOH A 52 652 34 HOH HOH . 
F 6 HOH A 53 653 35 HOH HOH . 
F 6 HOH A 54 654 37 HOH HOH . 
F 6 HOH A 55 655 39 HOH HOH . 
F 6 HOH A 56 656 40 HOH HOH . 
F 6 HOH A 57 657 41 HOH HOH . 
F 6 HOH A 58 658 42 HOH HOH . 
F 6 HOH A 59 659 44 HOH HOH . 
F 6 HOH A 60 660 45 HOH HOH . 
F 6 HOH A 61 661 46 HOH HOH . 
F 6 HOH A 62 662 47 HOH HOH . 
F 6 HOH A 63 663 48 HOH HOH . 
F 6 HOH A 64 664 49 HOH HOH . 
F 6 HOH A 65 665 50 HOH HOH . 
F 6 HOH A 66 666 53 HOH HOH . 
F 6 HOH A 67 667 54 HOH HOH . 
F 6 HOH A 68 668 55 HOH HOH . 
F 6 HOH A 69 669 57 HOH HOH . 
F 6 HOH A 70 670 58 HOH HOH . 
F 6 HOH A 71 671 61 HOH HOH . 
F 6 HOH A 72 672 64 HOH HOH . 
F 6 HOH A 73 673 67 HOH HOH . 
F 6 HOH A 74 674 70 HOH HOH . 
F 6 HOH A 75 675 71 HOH HOH . 
F 6 HOH A 76 676 72 HOH HOH . 
F 6 HOH A 77 677 73 HOH HOH . 
F 6 HOH A 78 678 74 HOH HOH . 
F 6 HOH A 79 679 75 HOH HOH . 
F 6 HOH A 80 680 76 HOH HOH . 
F 6 HOH A 81 681 77 HOH HOH . 
F 6 HOH A 82 682 78 HOH HOH . 
F 6 HOH A 83 683 80 HOH HOH . 
F 6 HOH A 84 684 81 HOH HOH . 
F 6 HOH A 85 685 82 HOH HOH . 
F 6 HOH A 86 686 83 HOH HOH . 
F 6 HOH A 87 687 85 HOH HOH . 
F 6 HOH A 88 688 86 HOH HOH . 
F 6 HOH A 89 689 87 HOH HOH . 
F 6 HOH A 90 690 88 HOH HOH . 
F 6 HOH A 91 691 89 HOH HOH . 
F 6 HOH A 92 692 90 HOH HOH . 
F 6 HOH A 93 693 91 HOH HOH . 
F 6 HOH A 94 694 92 HOH HOH . 
F 6 HOH A 95 695 93 HOH HOH . 
F 6 HOH A 96 696 94 HOH HOH . 
F 6 HOH A 97 697 95 HOH HOH . 
F 6 HOH A 98 698 100 HOH HOH . 
F 6 HOH A 99 699 101 HOH HOH . 
F 6 HOH A 100 700 102 HOH HOH . 
F 6 HOH A 101 701 103 HOH HOH . 
F 6 HOH A 102 702 107 HOH HOH . 
F 6 HOH A 103 703 108 HOH HOH . 
F 6 HOH A 104 704 110 HOH HOH . 
F 6 HOH A 105 705 113 HOH HOH . 
F 6 HOH A 106 706 114 HOH HOH . 
F 6 HOH A 107 707 118 HOH HOH . 
F 6 HOH A 108 708 119 HOH HOH . 
F 6 HOH A 109 709 120 HOH HOH . 
F 6 HOH A 110 710 121 HOH HOH . 
F 6 HOH A 111 711 123 HOH HOH . 
F 6 HOH A 112 712 126 HOH HOH . 
F 6 HOH A 113 713 127 HOH HOH . 
F 6 HOH A 114 714 128 HOH HOH . 
F 6 HOH A 115 715 131 HOH HOH . 
F 6 HOH A 116 716 132 HOH HOH . 
F 6 HOH A 117 717 134 HOH HOH . 
F 6 HOH A 118 718 137 HOH HOH . 
F 6 HOH A 119 719 141 HOH HOH . 
F 6 HOH A 120 720 144 HOH HOH . 
F 6 HOH A 121 721 145 HOH HOH . 
F 6 HOH A 122 722 146 HOH HOH . 
F 6 HOH A 123 723 147 HOH HOH . 
F 6 HOH A 124 724 148 HOH HOH . 
F 6 HOH A 125 725 153 HOH HOH . 
F 6 HOH A 126 726 157 HOH HOH . 
F 6 HOH A 127 727 159 HOH HOH . 
F 6 HOH A 128 728 163 HOH HOH . 
F 6 HOH A 129 729 166 HOH HOH . 
F 6 HOH A 130 730 169 HOH HOH . 
F 6 HOH A 131 731 173 HOH HOH . 
F 6 HOH A 132 732 178 HOH HOH . 
F 6 HOH A 133 733 182 HOH HOH . 
F 6 HOH A 134 734 183 HOH HOH . 
F 6 HOH A 135 735 184 HOH HOH . 
F 6 HOH A 136 736 185 HOH HOH . 
F 6 HOH A 137 737 188 HOH HOH . 
F 6 HOH A 138 738 190 HOH HOH . 
F 6 HOH A 139 739 195 HOH HOH . 
F 6 HOH A 140 740 199 HOH HOH . 
F 6 HOH A 141 741 205 HOH HOH . 
F 6 HOH A 142 742 209 HOH HOH . 
F 6 HOH A 143 743 217 HOH HOH . 
F 6 HOH A 144 744 220 HOH HOH . 
F 6 HOH A 145 745 221 HOH HOH . 
F 6 HOH A 146 746 223 HOH HOH . 
F 6 HOH A 147 747 227 HOH HOH . 
F 6 HOH A 148 748 234 HOH HOH . 
F 6 HOH A 149 749 237 HOH HOH . 
F 6 HOH A 150 750 239 HOH HOH . 
F 6 HOH A 151 751 240 HOH HOH . 
F 6 HOH A 152 752 241 HOH HOH . 
F 6 HOH A 153 753 242 HOH HOH . 
F 6 HOH A 154 754 243 HOH HOH . 
F 6 HOH A 155 755 247 HOH HOH . 
F 6 HOH A 156 756 256 HOH HOH . 
F 6 HOH A 157 757 264 HOH HOH . 
F 6 HOH A 158 758 271 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 5 -3.377 -10.132 18.712 1 37.09 ? C1 NAG 504 A 1 
HETATM 2 C C2 NAG . . . E 5 -2.37 -11.017 17.942 1 35.62 ? C2 NAG 504 A 1 
HETATM 3 C C3 NAG . . . E 5 -3.088 -12.236 17.38 1 36.94 ? C3 NAG 504 A 1 
HETATM 4 C C4 NAG . . . E 5 -3.901 -12.949 18.451 1 39.89 ? C4 NAG 504 A 1 
HETATM 5 C C5 NAG . . . E 5 -4.832 -11.94 19.146 1 38.47 ? C5 NAG 504 A 1 
HETATM 6 C C6 NAG . . . E 5 -5.674 -12.504 20.282 1 38.63 ? C6 NAG 504 A 1 
HETATM 7 C C7 NAG . . . E 5 -0.435 -10.16 16.511 1 38.3 ? C7 NAG 504 A 1 
HETATM 8 C C8 NAG . . . E 5 0.592 -10.936 17.229 1 35.91 ? C8 NAG 504 A 1 
HETATM 9 N N2 NAG . . . E 5 -1.733 -10.244 16.873 1 34.11 ? N2 NAG 504 A 1 
HETATM 10 O O3 NAG . . . E 5 -2.047 -13.051 16.96 1 37.88 ? O3 NAG 504 A 1 
HETATM 11 O O4 NAG . . . E 5 -4.539 -14.135 17.989 1 41.23 ? O4 NAG 504 A 1 
HETATM 12 O O5 NAG . . . E 5 -4.043 -10.922 19.716 1 38.59 ? O5 NAG 504 A 1 
HETATM 13 O O6 NAG . . . E 5 -4.915 -13.065 21.318 1 37.95 ? O6 NAG 504 A 1 
HETATM 14 O O7 NAG . . . E 5 -0.007 -9.442 15.583 1 38.86 ? O7 NAG 504 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#