data_4P14 # _model_server_result.job_id unPSwO0lO2BkaMj5THMDFg _model_server_result.datetime_utc '2024-11-01 15:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 4P14 # _exptl.entry_id 4P14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 103.12 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-ALPHA-AMINOBUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P14 _cell.length_a 67.12 _cell.length_b 70.94 _cell.length_c 97.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P14 _symmetry.cell_setting . _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc8 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc10 B CA CA . A CA 301 1_555 J O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc11 B CA CA . A CA 301 1_555 J O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 C MN MN . A MN 302 1_555 J O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc13 C MN MN . A MN 302 1_555 J O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C4 H9 N O2' _chem_comp.formula_weight 103.12 _chem_comp.id DBB _chem_comp.mon_nstd_flag . _chem_comp.name 'D-ALPHA-AMINOBUTYRIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DBB sing 86 n n CA C DBB sing 87 n n CA CB DBB sing 88 n n C O DBB doub 89 n n CB CG DBB sing 90 n n C OXT DBB sing 91 n n N H DBB sing 92 n n N H2 DBB sing 93 n n CA HA DBB sing 94 n n CB HB2 DBB sing 95 n n CB HB3 DBB sing 96 n n CG HG1 DBB sing 97 n n CG HG2 DBB sing 98 n n CG HG3 DBB sing 99 n n OXT HXT DBB sing 100 n n # _atom_sites.entry_id 4P14 _atom_sites.fract_transf_matrix[1][1] 0.014899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 238 CA CA . C 3 MN A 1 302 239 MN MN . D 4 ADE A 1 303 240 ADE ADE . E 5 GOL A 1 304 241 GOL GOL . F 6 DBB A 1 305 242 DBB DBB . G 7 EDO A 1 306 243 EDO EDO . H 7 EDO A 1 307 244 EDO EDO . I 5 GOL A 1 308 245 GOL GOL . J 8 HOH A 1 401 271 HOH HOH . J 8 HOH A 2 402 277 HOH HOH . J 8 HOH A 3 403 261 HOH HOH . J 8 HOH A 4 404 256 HOH HOH . J 8 HOH A 5 405 285 HOH HOH . J 8 HOH A 6 406 301 HOH HOH . J 8 HOH A 7 407 266 HOH HOH . J 8 HOH A 8 408 290 HOH HOH . J 8 HOH A 9 409 307 HOH HOH . J 8 HOH A 10 410 293 HOH HOH . J 8 HOH A 11 411 324 HOH HOH . J 8 HOH A 12 412 286 HOH HOH . J 8 HOH A 13 413 298 HOH HOH . J 8 HOH A 14 414 325 HOH HOH . J 8 HOH A 15 415 280 HOH HOH . J 8 HOH A 16 416 311 HOH HOH . J 8 HOH A 17 417 316 HOH HOH . J 8 HOH A 18 418 281 HOH HOH . J 8 HOH A 19 419 323 HOH HOH . J 8 HOH A 20 420 272 HOH HOH . J 8 HOH A 21 421 322 HOH HOH . J 8 HOH A 22 422 297 HOH HOH . J 8 HOH A 23 423 263 HOH HOH . J 8 HOH A 24 424 268 HOH HOH . J 8 HOH A 25 425 329 HOH HOH . J 8 HOH A 26 426 302 HOH HOH . J 8 HOH A 27 427 303 HOH HOH . J 8 HOH A 28 428 289 HOH HOH . J 8 HOH A 29 429 270 HOH HOH . J 8 HOH A 30 430 317 HOH HOH . J 8 HOH A 31 431 310 HOH HOH . J 8 HOH A 32 432 279 HOH HOH . J 8 HOH A 33 433 259 HOH HOH . J 8 HOH A 34 434 262 HOH HOH . J 8 HOH A 35 435 321 HOH HOH . J 8 HOH A 36 436 288 HOH HOH . J 8 HOH A 37 437 306 HOH HOH . J 8 HOH A 38 438 251 HOH HOH . J 8 HOH A 39 439 296 HOH HOH . J 8 HOH A 40 440 273 HOH HOH . J 8 HOH A 41 441 252 HOH HOH . J 8 HOH A 42 442 304 HOH HOH . J 8 HOH A 43 443 313 HOH HOH . J 8 HOH A 44 444 267 HOH HOH . J 8 HOH A 45 445 300 HOH HOH . J 8 HOH A 46 446 255 HOH HOH . J 8 HOH A 47 447 282 HOH HOH . J 8 HOH A 48 448 260 HOH HOH . J 8 HOH A 49 449 319 HOH HOH . J 8 HOH A 50 450 315 HOH HOH . J 8 HOH A 51 451 312 HOH HOH . J 8 HOH A 52 452 274 HOH HOH . J 8 HOH A 53 453 284 HOH HOH . J 8 HOH A 54 454 258 HOH HOH . J 8 HOH A 55 455 250 HOH HOH . J 8 HOH A 56 456 264 HOH HOH . J 8 HOH A 57 457 253 HOH HOH . J 8 HOH A 58 458 246 HOH HOH . J 8 HOH A 59 459 295 HOH HOH . J 8 HOH A 60 460 305 HOH HOH . J 8 HOH A 61 461 318 HOH HOH . J 8 HOH A 62 462 291 HOH HOH . J 8 HOH A 63 463 269 HOH HOH . J 8 HOH A 64 464 294 HOH HOH . J 8 HOH A 65 465 320 HOH HOH . J 8 HOH A 66 466 275 HOH HOH . J 8 HOH A 67 467 257 HOH HOH . J 8 HOH A 68 468 265 HOH HOH . J 8 HOH A 69 469 326 HOH HOH . J 8 HOH A 70 470 309 HOH HOH . J 8 HOH A 71 471 299 HOH HOH . J 8 HOH A 72 472 249 HOH HOH . J 8 HOH A 73 473 314 HOH HOH . J 8 HOH A 74 474 328 HOH HOH . J 8 HOH A 75 475 283 HOH HOH . J 8 HOH A 76 476 248 HOH HOH . J 8 HOH A 77 477 247 HOH HOH . J 8 HOH A 78 478 276 HOH HOH . J 8 HOH A 79 479 287 HOH HOH . J 8 HOH A 80 480 254 HOH HOH . J 8 HOH A 81 481 308 HOH HOH . J 8 HOH A 82 482 278 HOH HOH . J 8 HOH A 83 483 327 HOH HOH . J 8 HOH A 84 484 292 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DBB . . . F 6 13.182 5.426 -4.888 1 30.59 ? N DBB 305 A 1 HETATM 2 C CA DBB . . . F 6 12.309 5.275 -6.074 1 36.2 ? CA DBB 305 A 1 HETATM 3 C C DBB . . . F 6 12.483 3.953 -6.748 1 47.58 ? C DBB 305 A 1 HETATM 4 O O DBB . . . F 6 13.492 3.86 -7.431 1 42.06 ? O DBB 305 A 1 HETATM 5 C CB DBB . . . F 6 10.913 5.703 -5.794 1 29.05 ? CB DBB 305 A 1 HETATM 6 C CG DBB . . . F 6 10.87 7.175 -5.506 1 22.22 ? CG DBB 305 A 1 HETATM 7 O OXT DBB . . . F 6 11.717 2.989 -6.723 1 66.86 ? OXT DBB 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #