data_4P1D # _model_server_result.job_id TsD8QhJQkXbLS83uK3T8cw _model_server_result.datetime_utc '2024-11-27 17:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4P1D # _exptl.entry_id 4P1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P1D _cell.length_a 41.567 _cell.length_b 41.567 _cell.length_c 66.157 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P1D _symmetry.cell_setting . _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 DG 3 A DG 3 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc2 A O6 DG 4 A DG 4 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc3 A O6 DG 4 A DG 4 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc4 A O6 DG 5 A DG 5 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc5 A O6 DG 9 A DG 9 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc6 A O6 DG 10 A DG 10 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc7 A O6 DG 10 A DG 10 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc8 A O6 DG 11 A DG 11 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc9 C K K . A K 101 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc10 C K K . A K 101 1_555 B O6 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc11 C K K . A K 101 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc12 C K K . A K 101 1_555 B O6 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc13 D K K . A K 102 1_555 B O6 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc14 D K K . A K 102 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc15 D K K . A K 102 1_555 B O6 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc16 D K K . A K 102 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? hydrog 'REVERSED WATSON-CRICK' hydrog1 A N3 DT 1 A DT 1 1_555 B N1 DA 2 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog2 A O2 DT 1 A DT 1 1_555 B N6 DA 2 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog3 A N1 DA 2 A DA 2 1_555 B N3 DT 1 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog4 A N6 DA 2 A DA 2 1_555 B O2 DT 1 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 3 A DG 3 1_555 A O6 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 3 A DG 3 1_555 A N7 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 3 A DG 3 1_555 B N2 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 3 A DG 3 1_555 B N1 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 4 A DG 4 1_555 A O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 4 A DG 4 1_555 A N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 DG 4 A DG 4 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 DG 4 A DG 4 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 5 A DG 5 1_555 A O6 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 5 A DG 5 1_555 A N7 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N7 DG 5 A DG 5 1_555 B N2 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A O6 DG 5 A DG 5 1_555 B N1 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 DG 9 A DG 9 1_555 B O6 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 DG 9 A DG 9 1_555 B N7 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N1 DG 10 A DG 10 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N2 DG 10 A DG 10 1_555 B N7 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 A N1 DG 11 A DG 11 1_555 B O6 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N2 DG 11 A DG 11 1_555 B N7 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 B N1 DG 3 B DG 15 1_555 B O6 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 B N2 DG 3 B DG 15 1_555 B N7 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog25 B N2 DG 4 B DG 16 1_555 B O4 DT 6 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 B N1 DG 4 B DG 16 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 B N2 DG 4 B DG 16 1_555 B N7 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog28 B N1 DG 5 B DG 17 1_555 B O6 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 B N2 DG 5 B DG 17 1_555 B N7 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4P1D _atom_sites.fract_transf_matrix[1][1] 0.024058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 101 1 K K . D 2 K A 1 102 1 K K . E 3 KPT A 1 103 1 KPT KPT . F 4 HOH A 1 201 15 HOH HOH . F 4 HOH A 2 202 28 HOH HOH . F 4 HOH A 3 203 17 HOH HOH . F 4 HOH A 4 204 18 HOH HOH . F 4 HOH A 5 205 5 HOH HOH . F 4 HOH A 6 206 6 HOH HOH . F 4 HOH A 7 207 10 HOH HOH . F 4 HOH A 8 208 22 HOH HOH . F 4 HOH A 9 209 27 HOH HOH . G 4 HOH B 1 101 11 HOH HOH . G 4 HOH B 2 102 25 HOH HOH . G 4 HOH B 3 103 21 HOH HOH . G 4 HOH B 4 104 4 HOH HOH . G 4 HOH B 5 105 8 HOH HOH . G 4 HOH B 6 106 9 HOH HOH . G 4 HOH B 7 107 13 HOH HOH . G 4 HOH B 8 108 16 HOH HOH . G 4 HOH B 9 109 1 HOH HOH . G 4 HOH B 10 110 3 HOH HOH . G 4 HOH B 11 111 23 HOH HOH . G 4 HOH B 12 112 2 HOH HOH . G 4 HOH B 13 113 7 HOH HOH . G 4 HOH B 14 114 12 HOH HOH . G 4 HOH B 15 115 14 HOH HOH . G 4 HOH B 16 116 19 HOH HOH . G 4 HOH B 17 117 20 HOH HOH . G 4 HOH B 18 118 24 HOH HOH . G 4 HOH B 19 119 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.602 _atom_site.Cartn_y -20.383 _atom_site.Cartn_z -6.973 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #