data_4P1D # _model_server_result.job_id x1mzjiNtY25l_qY8P7S1Kw _model_server_result.datetime_utc '2024-11-27 17:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 4P1D # _exptl.entry_id 4P1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.319 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P1D _cell.length_a 41.567 _cell.length_b 41.567 _cell.length_c 66.157 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P1D _symmetry.cell_setting . _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 DG 3 A DG 3 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc2 A O6 DG 4 A DG 4 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc3 A O6 DG 4 A DG 4 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc4 A O6 DG 5 A DG 5 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc5 A O6 DG 9 A DG 9 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc6 A O6 DG 10 A DG 10 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc7 A O6 DG 10 A DG 10 1_555 D K K . A K 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc8 A O6 DG 11 A DG 11 1_555 C K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc9 C K K . A K 101 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc10 C K K . A K 101 1_555 B O6 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc11 C K K . A K 101 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc12 C K K . A K 101 1_555 B O6 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc13 D K K . A K 102 1_555 B O6 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc14 D K K . A K 102 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc15 D K K . A K 102 1_555 B O6 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc16 D K K . A K 102 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? hydrog 'REVERSED WATSON-CRICK' hydrog1 A N3 DT 1 A DT 1 1_555 B N1 DA 2 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog2 A O2 DT 1 A DT 1 1_555 B N6 DA 2 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog3 A N1 DA 2 A DA 2 1_555 B N3 DT 1 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog4 A N6 DA 2 A DA 2 1_555 B O2 DT 1 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 3 A DG 3 1_555 A O6 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 3 A DG 3 1_555 A N7 DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 3 A DG 3 1_555 B N2 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 3 A DG 3 1_555 B N1 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 4 A DG 4 1_555 A O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 4 A DG 4 1_555 A N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 DG 4 A DG 4 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 DG 4 A DG 4 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 5 A DG 5 1_555 A O6 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 5 A DG 5 1_555 A N7 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N7 DG 5 A DG 5 1_555 B N2 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A O6 DG 5 A DG 5 1_555 B N1 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 DG 9 A DG 9 1_555 B O6 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 DG 9 A DG 9 1_555 B N7 DG 3 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N1 DG 10 A DG 10 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N2 DG 10 A DG 10 1_555 B N7 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 A N1 DG 11 A DG 11 1_555 B O6 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N2 DG 11 A DG 11 1_555 B N7 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 B N1 DG 3 B DG 15 1_555 B O6 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 B N2 DG 3 B DG 15 1_555 B N7 DG 9 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog25 B N2 DG 4 B DG 16 1_555 B O4 DT 6 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 B N1 DG 4 B DG 16 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 B N2 DG 4 B DG 16 1_555 B N7 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog28 B N1 DG 5 B DG 17 1_555 B O6 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 B N2 DG 5 B DG 17 1_555 B N7 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C19 H14 N O4 1' _chem_comp.formula_weight 320.319 _chem_comp.id KPT _chem_comp.mon_nstd_flag . _chem_comp.name 6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Coptisine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C36 KPT sing 117 n n O3 C36 KPT sing 118 n n C18 O3 KPT sing 119 n n C13 C14 KPT sing 120 n y C13 C18 KPT sing 121 n y C17 C18 KPT doub 122 n y C17 O4 KPT sing 123 n n C16 C17 KPT sing 124 n y C15 C12 KPT sing 125 n y C15 C16 KPT doub 126 n y C12 C13 KPT doub 127 n y C11 C10 KPT doub 128 n y C11 C12 KPT sing 129 n y C10 N KPT sing 130 n y N C9 KPT sing 131 n n N C14 KPT doub 132 n y C8 C9 KPT sing 133 n n C6 C5 KPT sing 134 n y C6 C10 KPT sing 135 n n C5 C8 KPT sing 136 n n C4 C5 KPT doub 137 n y C7 C6 KPT doub 138 n y C3 C2 KPT doub 139 n y C3 C7 KPT sing 140 n y C2 C4 KPT sing 141 n y O2 C2 KPT sing 142 n n O1 C3 KPT sing 143 n n C1 O1 KPT sing 144 n n C1 O2 KPT sing 145 n n C36 H1 KPT sing 146 n n C36 H21 KPT sing 147 n n C14 H2 KPT sing 148 n n C16 H3 KPT sing 149 n n C15 H4 KPT sing 150 n n C11 H5 KPT sing 151 n n C9 H6 KPT sing 152 n n C9 H7 KPT sing 153 n n C8 H8 KPT sing 154 n n C8 H9 KPT sing 155 n n C4 H10 KPT sing 156 n n C7 H11 KPT sing 157 n n C1 H12 KPT sing 158 n n C1 H14 KPT sing 159 n n # _atom_sites.entry_id 4P1D _atom_sites.fract_transf_matrix[1][1] 0.024058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 101 1 K K . D 2 K A 1 102 1 K K . E 3 KPT A 1 103 1 KPT KPT . F 4 HOH A 1 201 15 HOH HOH . F 4 HOH A 2 202 28 HOH HOH . F 4 HOH A 3 203 17 HOH HOH . F 4 HOH A 4 204 18 HOH HOH . F 4 HOH A 5 205 5 HOH HOH . F 4 HOH A 6 206 6 HOH HOH . F 4 HOH A 7 207 10 HOH HOH . F 4 HOH A 8 208 22 HOH HOH . F 4 HOH A 9 209 27 HOH HOH . G 4 HOH B 1 101 11 HOH HOH . G 4 HOH B 2 102 25 HOH HOH . G 4 HOH B 3 103 21 HOH HOH . G 4 HOH B 4 104 4 HOH HOH . G 4 HOH B 5 105 8 HOH HOH . G 4 HOH B 6 106 9 HOH HOH . G 4 HOH B 7 107 13 HOH HOH . G 4 HOH B 8 108 16 HOH HOH . G 4 HOH B 9 109 1 HOH HOH . G 4 HOH B 10 110 3 HOH HOH . G 4 HOH B 11 111 23 HOH HOH . G 4 HOH B 12 112 2 HOH HOH . G 4 HOH B 13 113 7 HOH HOH . G 4 HOH B 14 114 12 HOH HOH . G 4 HOH B 15 115 14 HOH HOH . G 4 HOH B 16 116 19 HOH HOH . G 4 HOH B 17 117 20 HOH HOH . G 4 HOH B 18 118 24 HOH HOH . G 4 HOH B 19 119 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C36 KPT . . . E 3 -6.388 -17.549 -11.754 1 19.46 ? C36 KPT 103 A 1 HETATM 2 O O4 KPT . . . E 3 -6.99 -18.849 -11.919 1 23.48 ? O4 KPT 103 A 1 HETATM 3 O O3 KPT . . . E 3 -4.958 -17.817 -11.613 1 20.67 ? O3 KPT 103 A 1 HETATM 4 C C18 KPT . . . E 3 -4.758 -19.155 -11.76 1 20.21 ? C18 KPT 103 A 1 HETATM 5 C C13 KPT . . . E 3 -3.571 -19.907 -11.767 1 18.14 ? C13 KPT 103 A 1 HETATM 6 C C14 KPT . . . E 3 -2.323 -19.355 -11.573 1 18.34 ? C14 KPT 103 A 1 HETATM 7 C C17 KPT . . . E 3 -5.965 -19.771 -11.961 1 21.16 ? C17 KPT 103 A 1 HETATM 8 C C16 KPT . . . E 3 -6.089 -21.136 -12.17 1 20.56 ? C16 KPT 103 A 1 HETATM 9 C C15 KPT . . . E 3 -4.942 -21.936 -12.162 1 18.27 ? C15 KPT 103 A 1 HETATM 10 C C12 KPT . . . E 3 -3.69 -21.306 -11.967 1 17.45 ? C12 KPT 103 A 1 HETATM 11 C C11 KPT . . . E 3 -2.545 -22.083 -11.971 1 18.33 ? C11 KPT 103 A 1 HETATM 12 C C10 KPT . . . E 3 -1.277 -21.507 -11.774 1 19.34 ? C10 KPT 103 A 1 HETATM 13 N N KPT . . . E 3 -1.211 -20.162 -11.584 1 20.17 ? N KPT 103 A 1 HETATM 14 C C9 KPT . . . E 3 0.072 -19.504 -11.338 1 19.61 ? C9 KPT 103 A 1 HETATM 15 C C8 KPT . . . E 3 1.315 -20.144 -11.954 1 20.39 ? C8 KPT 103 A 1 HETATM 16 C C6 KPT . . . E 3 -0.095 -22.26 -11.853 1 18.18 ? C6 KPT 103 A 1 HETATM 17 C C5 KPT . . . E 3 1.171 -21.643 -11.97 1 17.83 ? C5 KPT 103 A 1 HETATM 18 C C4 KPT . . . E 3 2.384 -22.317 -12.117 1 22.74 ? C4 KPT 103 A 1 HETATM 19 C C7 KPT . . . E 3 -0.146 -23.653 -11.951 1 19.88 ? C7 KPT 103 A 1 HETATM 20 C C3 KPT . . . E 3 1.084 -24.303 -12.084 1 21.7 ? C3 KPT 103 A 1 HETATM 21 C C2 KPT . . . E 3 2.27 -23.679 -12.145 1 22.18 ? C2 KPT 103 A 1 HETATM 22 O O2 KPT . . . E 3 3.265 -24.593 -12.27 1 25.66 ? O2 KPT 103 A 1 HETATM 23 O O1 KPT . . . E 3 1.264 -25.648 -12.152 1 24.39 ? O1 KPT 103 A 1 HETATM 24 C C1 KPT . . . E 3 2.664 -25.855 -12.379 1 22.22 ? C1 KPT 103 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #