data_4P1O # _model_server_result.job_id VypXCVwY5ey-NJXIsEX1JA _model_server_result.datetime_utc '2025-08-31 20:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 4P1O # _exptl.entry_id 4P1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P1O _cell.length_a 104.633 _cell.length_b 104.633 _cell.length_c 99.861 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 601 1_555 D O2B ATP . A ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 C MG MG . A MG 601 1_555 D O1A ATP . A ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 C MG MG . A MG 601 1_555 D O1G ATP . A ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc4 E MG MG . B MG 601 1_555 F O1G ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc5 E MG MG . B MG 601 1_555 F O1A ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 E MG MG . B MG 601 1_555 F O2B ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4P1O _atom_sites.fract_transf_matrix[1][1] 0.009557 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 601 2000 MG MG . D 3 ATP A 1 602 1000 ATP ATP . E 2 MG B 1 601 2000 MG MG . F 3 ATP B 1 602 1000 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 3 112.094 46.554 -0.573 0.26 51.57 ? PG ATP 602 B 1 HETATM 2 O O1G ATP . . . F 3 112.506 45.442 -1.508 1 52.06 ? O1G ATP 602 B 1 HETATM 3 O O2G ATP . . . F 3 110.654 46.989 -0.7 0.56 50.96 1 O2G ATP 602 B 1 HETATM 4 O O3G ATP . . . F 3 112.57 46.353 0.845 1 51.59 ? O3G ATP 602 B 1 HETATM 5 P PB ATP . . . F 3 112.872 48.26 -2.638 0.61 53.15 ? PB ATP 602 B 1 HETATM 6 O O1B ATP . . . F 3 112.376 49.681 -2.736 1 53.62 1 O1B ATP 602 B 1 HETATM 7 O O2B ATP . . . F 3 112.207 47.165 -3.436 1 52.28 ? O2B ATP 602 B 1 HETATM 8 O O3B ATP . . . F 3 112.924 47.83 -1.088 1 52.66 ? O3B ATP 602 B 1 HETATM 9 P PA ATP . . . F 3 115.259 46.905 -2.716 0.67 55.88 ? PA ATP 602 B 1 HETATM 10 O O1A ATP . . . F 3 114.365 45.742 -3.075 1 54.32 1 O1A ATP 602 B 1 HETATM 11 O O2A ATP . . . F 3 115.876 46.961 -1.338 1 56.63 ? O2A ATP 602 B 1 HETATM 12 O O3A ATP . . . F 3 114.438 48.26 -2.984 0.85 55.29 ? O3A ATP 602 B 1 HETATM 13 O O5' ATP . . . F 3 116.411 47 -3.825 0.93 58.27 ? O5' ATP 602 B 1 HETATM 14 C C5' ATP . . . F 3 116.34 46.22 -5.015 1 58.01 ? C5' ATP 602 B 1 HETATM 15 C C4' ATP . . . F 3 117.234 46.915 -6.023 0.3 59.97 ? C4' ATP 602 B 1 HETATM 16 O O4' ATP . . . F 3 116.736 48.237 -6.228 1 59.55 ? O4' ATP 602 B 1 HETATM 17 C C3' ATP . . . F 3 118.638 47.031 -5.46 0.61 63.08 ? C3' ATP 602 B 1 HETATM 18 O O3' ATP . . . F 3 119.572 46.55 -6.428 1 64.69 ? O3' ATP 602 B 1 HETATM 19 C C2' ATP . . . F 3 118.861 48.508 -5.216 1 64.36 ? C2' ATP 602 B 1 HETATM 20 O O2' ATP . . . F 3 120.163 48.894 -5.656 0.89 67.23 ? O2' ATP 602 B 1 HETATM 21 C C1' ATP . . . F 3 117.776 49.197 -6.028 1 62.19 ? C1' ATP 602 B 1 HETATM 22 N N9 ATP . . . F 3 117.259 50.408 -5.336 1 62.24 ? N9 ATP 602 B 1 HETATM 23 C C8 ATP . . . F 3 116.896 50.511 -4.042 0.9 61.76 ? C8 ATP 602 B 1 HETATM 24 N N7 ATP . . . F 3 116.477 51.771 -3.754 0.69 62.37 ? N7 ATP 602 B 1 HETATM 25 C C5 ATP . . . F 3 116.572 52.502 -4.882 1 63.22 ? C5 ATP 602 B 1 HETATM 26 C C6 ATP . . . F 3 116.294 53.902 -5.284 1 64.3 ? C6 ATP 602 B 1 HETATM 27 N N6 ATP . . . F 3 115.813 54.811 -4.4 0.68 65.04 ? N6 ATP 602 B 1 HETATM 28 N N1 ATP . . . F 3 116.536 54.242 -6.569 1 64.62 ? N1 ATP 602 B 1 HETATM 29 C C2 ATP . . . F 3 117.012 53.357 -7.465 0.84 64.07 ? C2 ATP 602 B 1 HETATM 30 N N3 ATP . . . F 3 117.287 52.076 -7.17 1 63.35 ? N3 ATP 602 B 1 HETATM 31 C C4 ATP . . . F 3 117.094 51.597 -5.918 0.7 62.92 ? C4 ATP 602 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #