data_4P1U # _model_server_result.job_id 9Tbz0gvc4VxCueVOmac29g _model_server_result.datetime_utc '2025-02-18 01:31:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 4P1U # _exptl.entry_id 4P1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P1U _cell.length_a 81.174 _cell.length_b 81.174 _cell.length_c 54.427 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H19 F2 N5 O2' _chem_comp.formula_weight 399.394 _chem_comp.id 21G _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[[5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid;VX787;(2S,3S)-3-((5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl)amino)bicyclo[2.2.2]octane-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C5 21G sing 1 n y N9 C8 21G sing 2 n y N4 C5 21G sing 3 n y N4 C3 21G doub 4 n y C5 C6 21G doub 5 n y C8 C7 21G doub 6 n y C3 C2 21G sing 7 n y C6 C7 21G sing 8 n y C6 C1 21G sing 9 n y C7 C11 21G sing 10 n n C2 C1 21G doub 11 n y C2 F32 21G sing 12 n n N12 C11 21G doub 13 n y N12 C13 21G sing 14 n y C11 N16 21G sing 15 n y C13 C14 21G doub 16 n y N16 C15 21G doub 17 n y C15 C14 21G sing 18 n y C15 N17 21G sing 19 n n C14 F31 21G sing 20 n n O30 C28 21G doub 21 n n N17 C18 21G sing 22 n n C18 C25 21G sing 23 n n C18 C20 21G sing 24 n n C28 O29 21G sing 25 n n C28 C20 21G sing 26 n n C24 C25 21G sing 27 n n C24 C23 21G sing 28 n n C25 C26 21G sing 29 n n C20 C22 21G sing 30 n n C23 C22 21G sing 31 n n C26 C27 21G sing 32 n n C22 C27 21G sing 33 n n C1 H1 21G sing 34 n n C3 H2 21G sing 35 n n C8 H3 21G sing 36 n n N9 H4 21G sing 37 n n C13 H5 21G sing 38 n n N17 H6 21G sing 39 n n C18 H7 21G sing 40 n n C20 H8 21G sing 41 n n C22 H9 21G sing 42 n n C23 H10 21G sing 43 n n C23 H11 21G sing 44 n n C24 H12 21G sing 45 n n C24 H13 21G sing 46 n n C25 H14 21G sing 47 n n C26 H15 21G sing 48 n n C26 H16 21G sing 49 n n C27 H17 21G sing 50 n n C27 H18 21G sing 51 n n O29 H19 21G sing 52 n n # _atom_sites.entry_id 4P1U _atom_sites.fract_transf_matrix[1][1] 0.012319 _atom_sites.fract_transf_matrix[1][2] 0.007113 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 21G A 1 4000 4000 21G 787 . C 3 HOH A 1 4101 41 HOH HOH . C 3 HOH A 2 4102 9 HOH HOH . C 3 HOH A 3 4103 20 HOH HOH . C 3 HOH A 4 4104 47 HOH HOH . C 3 HOH A 5 4105 46 HOH HOH . C 3 HOH A 6 4106 39 HOH HOH . C 3 HOH A 7 4107 35 HOH HOH . C 3 HOH A 8 4108 42 HOH HOH . C 3 HOH A 9 4109 23 HOH HOH . C 3 HOH A 10 4110 12 HOH HOH . C 3 HOH A 11 4111 44 HOH HOH . C 3 HOH A 12 4112 10 HOH HOH . C 3 HOH A 13 4113 32 HOH HOH . C 3 HOH A 14 4114 5 HOH HOH . C 3 HOH A 15 4115 37 HOH HOH . C 3 HOH A 16 4116 11 HOH HOH . C 3 HOH A 17 4117 31 HOH HOH . C 3 HOH A 18 4118 5 HOH HOH . C 3 HOH A 19 4119 49 HOH HOH . C 3 HOH A 20 4120 54 HOH HOH . C 3 HOH A 21 4121 21 HOH HOH . C 3 HOH A 22 4122 1 HOH HOH . C 3 HOH A 23 4123 2 HOH HOH . C 3 HOH A 24 4124 3 HOH HOH . C 3 HOH A 25 4125 4 HOH HOH . C 3 HOH A 26 4126 6 HOH HOH . C 3 HOH A 27 4127 8 HOH HOH . C 3 HOH A 28 4128 14 HOH HOH . C 3 HOH A 29 4129 15 HOH HOH . C 3 HOH A 30 4130 17 HOH HOH . C 3 HOH A 31 4131 18 HOH HOH . C 3 HOH A 32 4132 22 HOH HOH . C 3 HOH A 33 4133 24 HOH HOH . C 3 HOH A 34 4134 25 HOH HOH . C 3 HOH A 35 4135 26 HOH HOH . C 3 HOH A 36 4136 28 HOH HOH . C 3 HOH A 37 4137 29 HOH HOH . C 3 HOH A 38 4138 34 HOH HOH . C 3 HOH A 39 4139 40 HOH HOH . C 3 HOH A 40 4140 45 HOH HOH . C 3 HOH A 41 4141 48 HOH HOH . C 3 HOH A 42 4142 50 HOH HOH . C 3 HOH A 43 4143 51 HOH HOH . C 3 HOH A 44 4144 52 HOH HOH . C 3 HOH A 45 4145 53 HOH HOH . C 3 HOH A 46 4146 55 HOH HOH . C 3 HOH A 47 4147 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 21G . . . B 2 -47.434 -4.749 1.629 1 33.84 ? C1 21G 4000 A 1 HETATM 2 C C2 21G . . . B 2 -46.121 -4.913 1.219 1 33.4 ? C2 21G 4000 A 1 HETATM 3 C C3 21G . . . B 2 -45.702 -4.38 0.004 1 30.52 ? C3 21G 4000 A 1 HETATM 4 C C5 21G . . . B 2 -47.86 -3.578 -0.442 1 33.29 ? C5 21G 4000 A 1 HETATM 5 C C6 21G . . . B 2 -48.33 -4.081 0.785 1 32.06 ? C6 21G 4000 A 1 HETATM 6 C C7 21G . . . B 2 -49.764 -3.749 0.859 1 31.88 ? C7 21G 4000 A 1 HETATM 7 N N4 21G . . . B 2 -46.568 -3.751 -0.779 1 32.9 ? N4 21G 4000 A 1 HETATM 8 C C8 21G . . . B 2 -50.087 -3.121 -0.303 1 32.07 ? C8 21G 4000 A 1 HETATM 9 N N9 21G . . . B 2 -48.947 -2.97 -1.052 1 33.6 ? N9 21G 4000 A 1 HETATM 10 C C11 21G . . . B 2 -50.643 -4.034 2.008 1 33.94 ? C11 21G 4000 A 1 HETATM 11 N N12 21G . . . B 2 -51.906 -3.611 2.053 1 34 ? N12 21G 4000 A 1 HETATM 12 C C13 21G . . . B 2 -52.679 -3.84 3.124 1 33.65 ? C13 21G 4000 A 1 HETATM 13 C C14 21G . . . B 2 -52.148 -4.521 4.207 1 38.8 ? C14 21G 4000 A 1 HETATM 14 C C15 21G . . . B 2 -50.827 -4.964 4.125 1 39.03 ? C15 21G 4000 A 1 HETATM 15 N N16 21G . . . B 2 -50.115 -4.687 3.035 1 38.03 ? N16 21G 4000 A 1 HETATM 16 N N17 21G . . . B 2 -50.286 -5.66 5.191 1 39.15 ? N17 21G 4000 A 1 HETATM 17 C C18 21G . . . B 2 -48.883 -6.077 5.265 1 38.77 ? C18 21G 4000 A 1 HETATM 18 C C20 21G . . . B 2 -48.89 -7.324 6.193 1 41.91 ? C20 21G 4000 A 1 HETATM 19 C C22 21G . . . B 2 -47.763 -7.208 7.238 1 36.38 ? C22 21G 4000 A 1 HETATM 20 C C23 21G . . . B 2 -46.437 -6.857 6.517 1 37.43 ? C23 21G 4000 A 1 HETATM 21 C C24 21G . . . B 2 -46.53 -5.449 5.862 1 38 ? C24 21G 4000 A 1 HETATM 22 C C25 21G . . . B 2 -47.996 -4.97 5.896 1 35.84 ? C25 21G 4000 A 1 HETATM 23 C C26 21G . . . B 2 -48.359 -4.76 7.388 1 32.54 ? C26 21G 4000 A 1 HETATM 24 C C27 21G . . . B 2 -48.169 -6.065 8.193 1 30.99 ? C27 21G 4000 A 1 HETATM 25 C C28 21G . . . B 2 -48.916 -8.645 5.453 1 45.35 ? C28 21G 4000 A 1 HETATM 26 O O29 21G . . . B 2 -49.088 -9.652 6.097 1 46.74 ? O29 21G 4000 A 1 HETATM 27 O O30 21G . . . B 2 -48.791 -8.71 4.113 1 46.44 ? O30 21G 4000 A 1 HETATM 28 F F31 21G . . . B 2 -52.864 -4.788 5.323 1 45.63 ? F31 21G 4000 A 1 HETATM 29 F F32 21G . . . B 2 -45.273 -5.562 2.034 1 37 ? F32 21G 4000 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 62 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #