data_4P27 # _model_server_result.job_id vuxdzi_aSfcJaTownSQY7w _model_server_result.datetime_utc '2024-11-05 06:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4P27 # _exptl.entry_id 4P27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4P27 _cell.length_a 78.645 _cell.length_b 78.645 _cell.length_c 83.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf3 A SG CYS 105 A CYS 105 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf4 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? covale ? covale1 A ND2 ASN 118 A ASN 118 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4P27 _atom_sites.fract_transf_matrix[1][1] 0.012715 _atom_sites.fract_transf_matrix[1][2] 0.007341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 201 NAG NAG . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 304 HOH HOH . C 3 HOH A 4 304 305 HOH HOH . C 3 HOH A 5 305 308 HOH HOH . C 3 HOH A 6 306 307 HOH HOH . C 3 HOH A 7 307 311 HOH HOH . C 3 HOH A 8 308 313 HOH HOH . C 3 HOH A 9 309 318 HOH HOH . C 3 HOH A 10 310 306 HOH HOH . C 3 HOH A 11 311 309 HOH HOH . C 3 HOH A 12 312 319 HOH HOH . C 3 HOH A 13 313 312 HOH HOH . C 3 HOH A 14 314 316 HOH HOH . C 3 HOH A 15 315 323 HOH HOH . C 3 HOH A 16 316 315 HOH HOH . C 3 HOH A 17 317 320 HOH HOH . C 3 HOH A 18 318 322 HOH HOH . C 3 HOH A 19 319 324 HOH HOH . C 3 HOH A 20 320 325 HOH HOH . C 3 HOH A 21 321 326 HOH HOH . C 3 HOH A 22 322 327 HOH HOH . C 3 HOH A 23 323 328 HOH HOH . C 3 HOH A 24 324 329 HOH HOH . C 3 HOH A 25 325 330 HOH HOH . C 3 HOH A 26 326 331 HOH HOH . C 3 HOH A 27 327 332 HOH HOH . C 3 HOH A 28 328 333 HOH HOH . C 3 HOH A 29 329 334 HOH HOH . C 3 HOH A 30 330 335 HOH HOH . C 3 HOH A 31 331 336 HOH HOH . C 3 HOH A 32 332 337 HOH HOH . C 3 HOH A 33 333 338 HOH HOH . C 3 HOH A 34 334 339 HOH HOH . C 3 HOH A 35 335 340 HOH HOH . C 3 HOH A 36 336 341 HOH HOH . C 3 HOH A 37 337 343 HOH HOH . C 3 HOH A 38 338 344 HOH HOH . C 3 HOH A 39 339 345 HOH HOH . C 3 HOH A 40 340 346 HOH HOH . C 3 HOH A 41 341 347 HOH HOH . C 3 HOH A 42 342 348 HOH HOH . C 3 HOH A 43 343 349 HOH HOH . C 3 HOH A 44 344 350 HOH HOH . C 3 HOH A 45 345 351 HOH HOH . C 3 HOH A 46 346 352 HOH HOH . C 3 HOH A 47 347 353 HOH HOH . C 3 HOH A 48 348 355 HOH HOH . C 3 HOH A 49 349 356 HOH HOH . C 3 HOH A 50 350 358 HOH HOH . C 3 HOH A 51 351 359 HOH HOH . C 3 HOH A 52 352 360 HOH HOH . C 3 HOH A 53 353 362 HOH HOH . C 3 HOH A 54 354 363 HOH HOH . C 3 HOH A 55 355 364 HOH HOH . C 3 HOH A 56 356 365 HOH HOH . C 3 HOH A 57 357 366 HOH HOH . C 3 HOH A 58 358 367 HOH HOH . C 3 HOH A 59 359 368 HOH HOH . C 3 HOH A 60 360 369 HOH HOH . C 3 HOH A 61 361 370 HOH HOH . C 3 HOH A 62 362 371 HOH HOH . C 3 HOH A 63 363 372 HOH HOH . C 3 HOH A 64 364 373 HOH HOH . C 3 HOH A 65 365 374 HOH HOH . C 3 HOH A 66 366 375 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 18.384 31.554 -8.172 1 41.26 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . B 2 17.436 30.7 -9.03 1 44.28 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . B 2 17.23 31.253 -10.406 1 52.49 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . B 2 16.843 32.699 -10.277 1 50.72 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . B 2 17.969 33.441 -9.592 1 58.2 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . B 2 17.659 34.913 -9.62 1 52.95 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . B 2 17.683 28.461 -8.29 1 51.5 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . B 2 18.315 27.14 -8.499 1 49.45 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . B 2 17.895 29.358 -9.208 1 43.88 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . B 2 16.216 30.502 -11.06 1 54.55 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . B 2 16.626 33.229 -11.549 1 71.3 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . B 2 18.12 32.938 -8.278 1 50.49 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . B 2 18.61 35.657 -8.899 1 55.42 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . B 2 17.037 28.663 -7.308 1 56.77 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #