data_4P2O # _model_server_result.job_id TdZSvtmzpDTyjjnqUaOkYQ _model_server_result.datetime_utc '2024-10-19 13:20:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 4P2O # _exptl.entry_id 4P2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.33 _cell.angle_gamma 90 _cell.entry_id 4P2O _cell.length_a 239.936 _cell.length_b 60.176 _cell.length_c 78.359 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P2O _symmetry.cell_setting . _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 6 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 E 1 NAG B 901 NAG 6 n F FUC 2 E 2 FUC B 904 FUC 6 n F NAG 3 E 3 NAG B 902 NAG 6 n F FUC 4 E 4 FUC B 903 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 107 1_555 A SG CYS 166 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 43 B CYS 15 1_555 B SG CYS 107 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 145 B CYS 117 1_555 B SG CYS 201 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 28 C CYS 22 1_555 C SG CYS 92 C CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 139 C CYS 133 1_555 C SG CYS 189 C CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 164 C CYS 158 1_555 D SG CYS 172 D CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 93 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 D SG CYS 70 D CYS 69 1_555 D SG CYS 76 D CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 D SG CYS 146 D CYS 145 1_555 D SG CYS 211 D CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 121 A ASN 118 1_555 G C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B ND2 ASN 47 B ASN 19 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 C ND2 ASN 29 C ASN 23 1_555 H C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 C ND2 ASN 149 C ASN 143 1_555 I C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 F O3 NAG . E NAG 1 1_555 F C1 FUC . E FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale7 F O6 NAG . E NAG 1 1_555 F C1 FUC . E FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 260 n n C1 O1 NAG sing 261 n n C1 O5 NAG sing 262 n n C1 H1 NAG sing 263 n n C2 C3 NAG sing 264 n n C2 N2 NAG sing 265 n n C2 H2 NAG sing 266 n n C3 C4 NAG sing 267 n n C3 O3 NAG sing 268 n n C3 H3 NAG sing 269 n n C4 C5 NAG sing 270 n n C4 O4 NAG sing 271 n n C4 H4 NAG sing 272 n n C5 C6 NAG sing 273 n n C5 O5 NAG sing 274 n n C5 H5 NAG sing 275 n n C6 O6 NAG sing 276 n n C6 H61 NAG sing 277 n n C6 H62 NAG sing 278 n n C7 C8 NAG sing 279 n n C7 N2 NAG sing 280 n n C7 O7 NAG doub 281 n n C8 H81 NAG sing 282 n n C8 H82 NAG sing 283 n n C8 H83 NAG sing 284 n n N2 HN2 NAG sing 285 n n O1 HO1 NAG sing 286 n n O3 HO3 NAG sing 287 n n O4 HO4 NAG sing 288 n n O6 HO6 NAG sing 289 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4P2O _atom_sites.fract_transf_matrix[1][1] 0.004168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 901 901 NAG NAG . H 7 NAG C 1 901 901 NAG NAG . I 7 NAG C 1 902 911 NAG NAG . J 8 HOH A 1 1001 1 HOH HOH . J 8 HOH A 2 1002 2 HOH HOH . J 8 HOH A 3 1003 7 HOH HOH . J 8 HOH A 4 1004 9 HOH HOH . J 8 HOH A 5 1005 13 HOH HOH . J 8 HOH A 6 1006 15 HOH HOH . J 8 HOH A 7 1007 20 HOH HOH . J 8 HOH A 8 1008 22 HOH HOH . J 8 HOH A 9 1009 23 HOH HOH . J 8 HOH A 10 1010 28 HOH HOH . J 8 HOH A 11 1011 29 HOH HOH . J 8 HOH A 12 1012 37 HOH HOH . J 8 HOH A 13 1013 38 HOH HOH . J 8 HOH A 14 1014 40 HOH HOH . J 8 HOH A 15 1015 43 HOH HOH . J 8 HOH A 16 1016 71 HOH HOH . J 8 HOH A 17 1017 73 HOH HOH . J 8 HOH A 18 1018 84 HOH HOH . J 8 HOH A 19 1019 86 HOH HOH . J 8 HOH A 20 1020 87 HOH HOH . J 8 HOH A 21 1021 90 HOH HOH . J 8 HOH A 22 1022 95 HOH HOH . J 8 HOH A 23 1023 96 HOH HOH . J 8 HOH A 24 1024 97 HOH HOH . J 8 HOH A 25 1025 98 HOH HOH . J 8 HOH A 26 1026 104 HOH HOH . J 8 HOH A 27 1027 105 HOH HOH . J 8 HOH A 28 1028 106 HOH HOH . J 8 HOH A 29 1029 107 HOH HOH . J 8 HOH A 30 1030 111 HOH HOH . J 8 HOH A 31 1031 118 HOH HOH . K 8 HOH B 1 1001 92 HOH HOH . K 8 HOH B 2 1002 27 HOH HOH . K 8 HOH B 3 1003 50 HOH HOH . K 8 HOH B 4 1004 54 HOH HOH . K 8 HOH B 5 1005 75 HOH HOH . K 8 HOH B 6 1006 115 HOH HOH . K 8 HOH B 7 1007 3 HOH HOH . K 8 HOH B 8 1008 11 HOH HOH . K 8 HOH B 9 1009 21 HOH HOH . K 8 HOH B 10 1010 33 HOH HOH . K 8 HOH B 11 1011 35 HOH HOH . K 8 HOH B 12 1012 44 HOH HOH . K 8 HOH B 13 1013 51 HOH HOH . K 8 HOH B 14 1014 55 HOH HOH . K 8 HOH B 15 1015 56 HOH HOH . K 8 HOH B 16 1016 58 HOH HOH . K 8 HOH B 17 1017 59 HOH HOH . K 8 HOH B 18 1018 61 HOH HOH . K 8 HOH B 19 1019 65 HOH HOH . K 8 HOH B 20 1020 72 HOH HOH . K 8 HOH B 21 1021 74 HOH HOH . K 8 HOH B 22 1022 79 HOH HOH . K 8 HOH B 23 1023 80 HOH HOH . K 8 HOH B 24 1024 88 HOH HOH . K 8 HOH B 25 1025 91 HOH HOH . K 8 HOH B 26 1026 99 HOH HOH . K 8 HOH B 27 1027 100 HOH HOH . K 8 HOH B 28 1028 110 HOH HOH . L 8 HOH C 1 1001 101 HOH HOH . L 8 HOH C 2 1002 83 HOH HOH . L 8 HOH C 3 1003 32 HOH HOH . L 8 HOH C 4 1004 53 HOH HOH . L 8 HOH C 5 1005 49 HOH HOH . L 8 HOH C 6 1006 4 HOH HOH . L 8 HOH C 7 1007 8 HOH HOH . L 8 HOH C 8 1008 10 HOH HOH . L 8 HOH C 9 1009 14 HOH HOH . L 8 HOH C 10 1010 17 HOH HOH . L 8 HOH C 11 1011 26 HOH HOH . L 8 HOH C 12 1012 30 HOH HOH . L 8 HOH C 13 1013 34 HOH HOH . L 8 HOH C 14 1014 45 HOH HOH . L 8 HOH C 15 1015 47 HOH HOH . L 8 HOH C 16 1016 57 HOH HOH . L 8 HOH C 17 1017 60 HOH HOH . L 8 HOH C 18 1018 62 HOH HOH . L 8 HOH C 19 1019 63 HOH HOH . L 8 HOH C 20 1020 68 HOH HOH . L 8 HOH C 21 1021 69 HOH HOH . L 8 HOH C 22 1022 70 HOH HOH . L 8 HOH C 23 1023 76 HOH HOH . L 8 HOH C 24 1024 78 HOH HOH . L 8 HOH C 25 1025 81 HOH HOH . L 8 HOH C 26 1026 89 HOH HOH . L 8 HOH C 27 1027 93 HOH HOH . L 8 HOH C 28 1028 114 HOH HOH . M 8 HOH D 1 301 52 HOH HOH . M 8 HOH D 2 302 31 HOH HOH . M 8 HOH D 3 303 82 HOH HOH . M 8 HOH D 4 304 108 HOH HOH . M 8 HOH D 5 305 5 HOH HOH . M 8 HOH D 6 306 6 HOH HOH . M 8 HOH D 7 307 12 HOH HOH . M 8 HOH D 8 308 16 HOH HOH . M 8 HOH D 9 309 18 HOH HOH . M 8 HOH D 10 310 19 HOH HOH . M 8 HOH D 11 311 24 HOH HOH . M 8 HOH D 12 312 25 HOH HOH . M 8 HOH D 13 313 36 HOH HOH . M 8 HOH D 14 314 39 HOH HOH . M 8 HOH D 15 315 41 HOH HOH . M 8 HOH D 16 316 42 HOH HOH . M 8 HOH D 17 317 46 HOH HOH . M 8 HOH D 18 318 48 HOH HOH . M 8 HOH D 19 319 64 HOH HOH . M 8 HOH D 20 320 66 HOH HOH . M 8 HOH D 21 321 77 HOH HOH . M 8 HOH D 22 322 85 HOH HOH . M 8 HOH D 23 323 94 HOH HOH . M 8 HOH D 24 324 102 HOH HOH . M 8 HOH D 25 325 103 HOH HOH . M 8 HOH D 26 326 109 HOH HOH . M 8 HOH D 27 327 112 HOH HOH . M 8 HOH D 28 328 113 HOH HOH . M 8 HOH D 29 329 116 HOH HOH . M 8 HOH D 30 330 117 HOH HOH . N 8 HOH P 1 101 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 7 103.28 -6.879 16.267 1 90.66 ? C1 NAG 901 A 1 HETATM 2 C C2 NAG . . . G 7 101.912 -6.215 16.383 1 96.47 ? C2 NAG 901 A 1 HETATM 3 C C3 NAG . . . G 7 101.55 -5.532 15.067 1 96.27 ? C3 NAG 901 A 1 HETATM 4 C C4 NAG . . . G 7 102.654 -4.569 14.651 1 92.76 ? C4 NAG 901 A 1 HETATM 5 C C5 NAG . . . G 7 104.002 -5.288 14.624 1 99.76 ? C5 NAG 901 A 1 HETATM 6 C C6 NAG . . . G 7 105.162 -4.359 14.345 1 99.88 ? C6 NAG 901 A 1 HETATM 7 C C7 NAG . . . G 7 100.513 -7.377 18.029 1 103.08 ? C7 NAG 901 A 1 HETATM 8 C C8 NAG . . . G 7 99.446 -8.408 18.242 1 103.55 ? C8 NAG 901 A 1 HETATM 9 N N2 NAG . . . G 7 100.891 -7.177 16.762 1 100.42 ? N2 NAG 901 A 1 HETATM 10 O O3 NAG . . . G 7 100.32 -4.83 15.218 1 101.54 ? O3 NAG 901 A 1 HETATM 11 O O4 NAG . . . G 7 102.377 -4.035 13.361 1 83.75 ? O4 NAG 901 A 1 HETATM 12 O O5 NAG . . . G 7 104.259 -5.903 15.897 1 96.9 ? O5 NAG 901 A 1 HETATM 13 O O6 NAG . . . G 7 106.114 -4.385 15.4 1 96.74 ? O6 NAG 901 A 1 HETATM 14 O O7 NAG . . . G 7 101.011 -6.753 18.961 1 105.42 ? O7 NAG 901 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #