data_4P2T # _model_server_result.job_id TMhSAVTv4-Ld9CYXvT4Qig _model_server_result.datetime_utc '2024-11-05 00:37:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4p2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4P2T # _exptl.entry_id 4P2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4P2T _cell.length_a 69.737 _cell.length_b 95.947 _cell.length_c 119.245 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P2T _symmetry.cell_setting . _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,C,D,G 3 1,2 B,E,F,H 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1 -1 0 0 0 1 0 0 0 -1 -69.737 0 -119.245 3 'crystal symmetry operation' 6_444 -x-1/2,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 -34.8685 -47.9735 -59.6225 4 'crystal symmetry operation' 8_444 x-1/2,-y-1/2,-z-1/2 1 0 0 0 -1 0 0 0 -1 -34.8685 -47.9735 -59.6225 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 153 n n S C1 DMS sing 154 n n S C2 DMS sing 155 n n C1 H11 DMS sing 156 n n C1 H12 DMS sing 157 n n C1 H13 DMS sing 158 n n C2 H21 DMS sing 159 n n C2 H22 DMS sing 160 n n C2 H23 DMS sing 161 n n # _atom_sites.entry_id 4P2T _atom_sites.fract_transf_matrix[1][1] 0.01434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 24Q A 1 201 10 24Q LIG . D 3 DMS A 1 202 3 DMS DMS . E 2 24Q B 1 201 8 24Q LIG . F 2 24Q B 1 202 9 24Q LIG . G 4 HOH A 1 301 65 HOH HOH . G 4 HOH A 2 302 180 HOH HOH . G 4 HOH A 3 303 191 HOH HOH . G 4 HOH A 4 304 42 HOH HOH . G 4 HOH A 5 305 59 HOH HOH . G 4 HOH A 6 306 26 HOH HOH . G 4 HOH A 7 307 120 HOH HOH . G 4 HOH A 8 308 78 HOH HOH . G 4 HOH A 9 309 36 HOH HOH . G 4 HOH A 10 310 20 HOH HOH . G 4 HOH A 11 311 40 HOH HOH . G 4 HOH A 12 312 24 HOH HOH . G 4 HOH A 13 313 66 HOH HOH . G 4 HOH A 14 314 101 HOH HOH . G 4 HOH A 15 315 90 HOH HOH . G 4 HOH A 16 316 27 HOH HOH . G 4 HOH A 17 317 94 HOH HOH . G 4 HOH A 18 318 179 HOH HOH . G 4 HOH A 19 319 125 HOH HOH . G 4 HOH A 20 320 165 HOH HOH . G 4 HOH A 21 321 116 HOH HOH . G 4 HOH A 22 322 103 HOH HOH . G 4 HOH A 23 323 122 HOH HOH . G 4 HOH A 24 324 63 HOH HOH . G 4 HOH A 25 325 135 HOH HOH . G 4 HOH A 26 326 73 HOH HOH . G 4 HOH A 27 327 4 HOH HOH . G 4 HOH A 28 328 8 HOH HOH . G 4 HOH A 29 329 9 HOH HOH . G 4 HOH A 30 330 10 HOH HOH . G 4 HOH A 31 331 17 HOH HOH . G 4 HOH A 32 332 21 HOH HOH . G 4 HOH A 33 333 29 HOH HOH . G 4 HOH A 34 334 30 HOH HOH . G 4 HOH A 35 335 32 HOH HOH . G 4 HOH A 36 336 33 HOH HOH . G 4 HOH A 37 337 35 HOH HOH . G 4 HOH A 38 338 37 HOH HOH . G 4 HOH A 39 339 39 HOH HOH . G 4 HOH A 40 340 43 HOH HOH . G 4 HOH A 41 341 49 HOH HOH . G 4 HOH A 42 342 50 HOH HOH . G 4 HOH A 43 343 55 HOH HOH . G 4 HOH A 44 344 56 HOH HOH . G 4 HOH A 45 345 58 HOH HOH . G 4 HOH A 46 346 60 HOH HOH . G 4 HOH A 47 347 62 HOH HOH . G 4 HOH A 48 348 64 HOH HOH . G 4 HOH A 49 349 70 HOH HOH . G 4 HOH A 50 350 74 HOH HOH . G 4 HOH A 51 351 77 HOH HOH . G 4 HOH A 52 352 79 HOH HOH . G 4 HOH A 53 353 80 HOH HOH . G 4 HOH A 54 354 82 HOH HOH . G 4 HOH A 55 355 85 HOH HOH . G 4 HOH A 56 356 86 HOH HOH . G 4 HOH A 57 357 87 HOH HOH . G 4 HOH A 58 358 99 HOH HOH . G 4 HOH A 59 359 102 HOH HOH . G 4 HOH A 60 360 104 HOH HOH . G 4 HOH A 61 361 105 HOH HOH . G 4 HOH A 62 362 106 HOH HOH . G 4 HOH A 63 363 108 HOH HOH . G 4 HOH A 64 364 114 HOH HOH . G 4 HOH A 65 365 115 HOH HOH . G 4 HOH A 66 366 123 HOH HOH . G 4 HOH A 67 367 124 HOH HOH . G 4 HOH A 68 368 128 HOH HOH . G 4 HOH A 69 369 130 HOH HOH . G 4 HOH A 70 370 131 HOH HOH . G 4 HOH A 71 371 139 HOH HOH . G 4 HOH A 72 372 141 HOH HOH . G 4 HOH A 73 373 143 HOH HOH . G 4 HOH A 74 374 145 HOH HOH . G 4 HOH A 75 375 149 HOH HOH . G 4 HOH A 76 376 151 HOH HOH . G 4 HOH A 77 377 155 HOH HOH . G 4 HOH A 78 378 159 HOH HOH . G 4 HOH A 79 379 160 HOH HOH . G 4 HOH A 80 380 169 HOH HOH . G 4 HOH A 81 381 170 HOH HOH . G 4 HOH A 82 382 173 HOH HOH . G 4 HOH A 83 383 181 HOH HOH . G 4 HOH A 84 384 183 HOH HOH . G 4 HOH A 85 385 186 HOH HOH . G 4 HOH A 86 386 189 HOH HOH . H 4 HOH B 1 301 174 HOH HOH . H 4 HOH B 2 302 127 HOH HOH . H 4 HOH B 3 303 67 HOH HOH . H 4 HOH B 4 304 89 HOH HOH . H 4 HOH B 5 305 84 HOH HOH . H 4 HOH B 6 306 41 HOH HOH . H 4 HOH B 7 307 168 HOH HOH . H 4 HOH B 8 308 137 HOH HOH . H 4 HOH B 9 309 190 HOH HOH . H 4 HOH B 10 310 138 HOH HOH . H 4 HOH B 11 311 111 HOH HOH . H 4 HOH B 12 312 2 HOH HOH . H 4 HOH B 13 313 71 HOH HOH . H 4 HOH B 14 314 18 HOH HOH . H 4 HOH B 15 315 13 HOH HOH . H 4 HOH B 16 316 1 HOH HOH . H 4 HOH B 17 317 3 HOH HOH . H 4 HOH B 18 318 25 HOH HOH . H 4 HOH B 19 319 117 HOH HOH . H 4 HOH B 20 320 75 HOH HOH . H 4 HOH B 21 321 140 HOH HOH . H 4 HOH B 22 322 69 HOH HOH . H 4 HOH B 23 323 158 HOH HOH . H 4 HOH B 24 324 107 HOH HOH . H 4 HOH B 25 325 98 HOH HOH . H 4 HOH B 26 326 161 HOH HOH . H 4 HOH B 27 327 113 HOH HOH . H 4 HOH B 28 328 53 HOH HOH . H 4 HOH B 29 329 31 HOH HOH . H 4 HOH B 30 330 48 HOH HOH . H 4 HOH B 31 331 28 HOH HOH . H 4 HOH B 32 332 126 HOH HOH . H 4 HOH B 33 333 81 HOH HOH . H 4 HOH B 34 334 176 HOH HOH . H 4 HOH B 35 335 156 HOH HOH . H 4 HOH B 36 336 146 HOH HOH . H 4 HOH B 37 337 188 HOH HOH . H 4 HOH B 38 338 76 HOH HOH . H 4 HOH B 39 339 47 HOH HOH . H 4 HOH B 40 340 118 HOH HOH . H 4 HOH B 41 341 136 HOH HOH . H 4 HOH B 42 342 182 HOH HOH . H 4 HOH B 43 343 96 HOH HOH . H 4 HOH B 44 344 5 HOH HOH . H 4 HOH B 45 345 6 HOH HOH . H 4 HOH B 46 346 7 HOH HOH . H 4 HOH B 47 347 11 HOH HOH . H 4 HOH B 48 348 12 HOH HOH . H 4 HOH B 49 349 14 HOH HOH . H 4 HOH B 50 350 15 HOH HOH . H 4 HOH B 51 351 16 HOH HOH . H 4 HOH B 52 352 19 HOH HOH . H 4 HOH B 53 353 22 HOH HOH . H 4 HOH B 54 354 23 HOH HOH . H 4 HOH B 55 355 34 HOH HOH . H 4 HOH B 56 356 38 HOH HOH . H 4 HOH B 57 357 44 HOH HOH . H 4 HOH B 58 358 45 HOH HOH . H 4 HOH B 59 359 46 HOH HOH . H 4 HOH B 60 360 51 HOH HOH . H 4 HOH B 61 361 52 HOH HOH . H 4 HOH B 62 362 54 HOH HOH . H 4 HOH B 63 363 57 HOH HOH . H 4 HOH B 64 364 61 HOH HOH . H 4 HOH B 65 365 68 HOH HOH . H 4 HOH B 66 366 72 HOH HOH . H 4 HOH B 67 367 83 HOH HOH . H 4 HOH B 68 368 88 HOH HOH . H 4 HOH B 69 369 91 HOH HOH . H 4 HOH B 70 370 92 HOH HOH . H 4 HOH B 71 371 93 HOH HOH . H 4 HOH B 72 372 95 HOH HOH . H 4 HOH B 73 373 97 HOH HOH . H 4 HOH B 74 374 100 HOH HOH . H 4 HOH B 75 375 109 HOH HOH . H 4 HOH B 76 376 110 HOH HOH . H 4 HOH B 77 377 112 HOH HOH . H 4 HOH B 78 378 119 HOH HOH . H 4 HOH B 79 379 121 HOH HOH . H 4 HOH B 80 380 129 HOH HOH . H 4 HOH B 81 381 132 HOH HOH . H 4 HOH B 82 382 133 HOH HOH . H 4 HOH B 83 383 134 HOH HOH . H 4 HOH B 84 384 142 HOH HOH . H 4 HOH B 85 385 144 HOH HOH . H 4 HOH B 86 386 147 HOH HOH . H 4 HOH B 87 387 148 HOH HOH . H 4 HOH B 88 388 150 HOH HOH . H 4 HOH B 89 389 152 HOH HOH . H 4 HOH B 90 390 153 HOH HOH . H 4 HOH B 91 391 154 HOH HOH . H 4 HOH B 92 392 157 HOH HOH . H 4 HOH B 93 393 162 HOH HOH . H 4 HOH B 94 394 163 HOH HOH . H 4 HOH B 95 395 164 HOH HOH . H 4 HOH B 96 396 166 HOH HOH . H 4 HOH B 97 397 167 HOH HOH . H 4 HOH B 98 398 171 HOH HOH . H 4 HOH B 99 399 172 HOH HOH . H 4 HOH B 100 400 175 HOH HOH . H 4 HOH B 101 401 177 HOH HOH . H 4 HOH B 102 402 178 HOH HOH . H 4 HOH B 103 403 184 HOH HOH . H 4 HOH B 104 404 185 HOH HOH . H 4 HOH B 105 405 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -29.651 -6.477 -56.065 1 98.44 ? S DMS 202 A 1 HETATM 2 O O DMS . . . D 3 -29.461 -6.545 -57.548 1 91.78 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . D 3 -29.752 -4.744 -55.54 1 57.27 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . D 3 -31.327 -7.031 -55.644 1 48.42 ? C2 DMS 202 A 1 HETATM 5 H H11 DMS . . . D 3 -28.825 -4.265 -55.722 1 68.73 ? H11 DMS 202 A 1 HETATM 6 H H12 DMS . . . D 3 -30.516 -4.253 -56.085 1 68.73 ? H12 DMS 202 A 1 HETATM 7 H H13 DMS . . . D 3 -29.974 -4.701 -54.505 1 68.73 ? H13 DMS 202 A 1 HETATM 8 H H21 DMS . . . D 3 -31.434 -8.054 -55.893 1 58.1 ? H21 DMS 202 A 1 HETATM 9 H H22 DMS . . . D 3 -31.492 -6.9 -54.606 1 58.1 ? H22 DMS 202 A 1 HETATM 10 H H23 DMS . . . D 3 -32.034 -6.46 -56.188 1 58.1 ? H23 DMS 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #